2021-03-29T23:23:05,528 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-03-29T23:23:06,205 Created temporary directory: /tmp/pip-ephem-wheel-cache-trzy61u5
2021-03-29T23:23:06,210 Created temporary directory: /tmp/pip-req-tracker-g6dmm0_v
2021-03-29T23:23:06,211 Initialized build tracking at /tmp/pip-req-tracker-g6dmm0_v
2021-03-29T23:23:06,211 Created build tracker: /tmp/pip-req-tracker-g6dmm0_v
2021-03-29T23:23:06,212 Entered build tracker: /tmp/pip-req-tracker-g6dmm0_v
2021-03-29T23:23:06,213 Created temporary directory: /tmp/pip-wheel-ub3bouh_
2021-03-29T23:23:06,289 1 location(s) to search for versions of ebi-eva-common-pyutils:
2021-03-29T23:23:06,289 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-29T23:23:06,290 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-29T23:23:06,292 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-03-29T23:23:06,297 Found index url https://pypi.org/simple
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2021-03-29T23:23:06,755 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-03-29T23:23:06,791 Collecting ebi-eva-common-pyutils==0.3.9.dev14
2021-03-29T23:23:06,795   Created temporary directory: /tmp/pip-unpack-umaj0rap
2021-03-29T23:23:07,024   Downloading ebi_eva_common_pyutils-0.3.9.dev14.tar.gz (17 kB)
2021-03-29T23:23:07,238   Added ebi-eva-common-pyutils==0.3.9.dev14 from https://files.pythonhosted.org/packages/04/70/473db551a598dbe3e56f5452335f1fa80bd33536d27c292df81076bdccf4/ebi_eva_common_pyutils-0.3.9.dev14.tar.gz#sha256=545c491ef45972ce33d733912e54809df0ebac4f617dced5037f7ea7e18f054e to build tracker '/tmp/pip-req-tracker-g6dmm0_v'
2021-03-29T23:23:07,240     Running setup.py (path:/tmp/pip-wheel-ub3bouh_/ebi-eva-common-pyutils_74e0123fc5a84e4a8bc22ce45c524139/setup.py) egg_info for package ebi-eva-common-pyutils
2021-03-29T23:23:07,241     Created temporary directory: /tmp/pip-pip-egg-info-0htf_60d
2021-03-29T23:23:07,242     Running command python setup.py egg_info
2021-03-29T23:23:09,476     running egg_info
2021-03-29T23:23:09,483     creating /tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info
2021-03-29T23:23:09,486     writing requirements to /tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-29T23:23:09,489     writing /tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-29T23:23:09,493     writing top-level names to /tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-29T23:23:09,497     writing dependency_links to /tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-29T23:23:09,503     writing manifest file '/tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-29T23:23:09,871     reading manifest file '/tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-29T23:23:09,881     writing manifest file '/tmp/pip-pip-egg-info-0htf_60d/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-29T23:23:09,884     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev14' to '0.3.9.dev14'
2021-03-29T23:23:09,885       warnings.warn(tmpl.format(**locals()))
2021-03-29T23:23:10,017   Source in /tmp/pip-wheel-ub3bouh_/ebi-eva-common-pyutils_74e0123fc5a84e4a8bc22ce45c524139 has version 0.3.9.dev14, which satisfies requirement ebi-eva-common-pyutils==0.3.9.dev14 from https://files.pythonhosted.org/packages/04/70/473db551a598dbe3e56f5452335f1fa80bd33536d27c292df81076bdccf4/ebi_eva_common_pyutils-0.3.9.dev14.tar.gz#sha256=545c491ef45972ce33d733912e54809df0ebac4f617dced5037f7ea7e18f054e
2021-03-29T23:23:10,019   Removed ebi-eva-common-pyutils==0.3.9.dev14 from https://files.pythonhosted.org/packages/04/70/473db551a598dbe3e56f5452335f1fa80bd33536d27c292df81076bdccf4/ebi_eva_common_pyutils-0.3.9.dev14.tar.gz#sha256=545c491ef45972ce33d733912e54809df0ebac4f617dced5037f7ea7e18f054e from build tracker '/tmp/pip-req-tracker-g6dmm0_v'
2021-03-29T23:23:10,028 Created temporary directory: /tmp/pip-unpack-5dmn42d6
2021-03-29T23:23:10,029 Building wheels for collected packages: ebi-eva-common-pyutils
2021-03-29T23:23:10,038   Created temporary directory: /tmp/pip-wheel-i759pzzc
2021-03-29T23:23:10,039   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-03-29T23:23:10,040   Destination directory: /tmp/pip-wheel-i759pzzc
2021-03-29T23:23:10,040   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ub3bouh_/ebi-eva-common-pyutils_74e0123fc5a84e4a8bc22ce45c524139/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ub3bouh_/ebi-eva-common-pyutils_74e0123fc5a84e4a8bc22ce45c524139/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-i759pzzc
2021-03-29T23:23:12,247   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.9dev14' to '0.3.9.dev14'
2021-03-29T23:23:12,248     warnings.warn(tmpl.format(**locals()))
2021-03-29T23:23:12,367   running bdist_wheel
2021-03-29T23:23:12,383   running build
2021-03-29T23:23:12,383   running build_py
2021-03-29T23:23:12,721   creating build
2021-03-29T23:23:12,722   creating build/lib
2021-03-29T23:23:12,724   creating build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,727   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,732   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,737   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,740   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,745   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,751   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,757   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,763   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,770   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,775   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,781   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-03-29T23:23:12,789   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-03-29T23:23:12,792   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-29T23:23:12,798   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-03-29T23:23:12,807   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-29T23:23:12,810   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-29T23:23:12,815   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-03-29T23:23:12,823   creating build/lib/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,825   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,831   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,835   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,842   creating build/lib/ebi_eva_common_pyutils/assembly
2021-03-29T23:23:12,843   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-29T23:23:12,848   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-03-29T23:23:12,857   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-03-29T23:23:12,859   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-29T23:23:12,866   copying ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-03-29T23:23:12,886   installing to build/bdist.linux-armv7l/wheel
2021-03-29T23:23:12,886   running install
2021-03-29T23:23:12,889   running install_lib
2021-03-29T23:23:12,897   creating build/bdist.linux-armv7l
2021-03-29T23:23:12,897   creating build/bdist.linux-armv7l/wheel
2021-03-29T23:23:12,901   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,904   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,908   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,916   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-29T23:23:12,918   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-29T23:23:12,925   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-03-29T23:23:12,932   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,937   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,943   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,951   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-29T23:23:12,954   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-29T23:23:12,959   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-03-29T23:23:12,965   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,970   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:12,977   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,980   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,985   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,991   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-03-29T23:23:12,998   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:13,004   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:13,010   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:13,017   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-29T23:23:13,020   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-29T23:23:13,026   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-03-29T23:23:13,033   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-03-29T23:23:13,040   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-29T23:23:13,043   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-29T23:23:13,049   copying build/lib/ebi_eva_common_pyutils/nextflow/linear_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-03-29T23:23:13,054   running install_egg_info
2021-03-29T23:23:13,101   running egg_info
2021-03-29T23:23:13,102   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-03-29T23:23:13,106   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-03-29T23:23:13,108   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-03-29T23:23:13,112   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-03-29T23:23:13,128   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-29T23:23:13,140   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-03-29T23:23:13,144   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev14-py3.5.egg-info
2021-03-29T23:23:13,170   running install_scripts
2021-03-29T23:23:13,368   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.9.dev14.dist-info/WHEEL
2021-03-29T23:23:13,674   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-03-29T23:23:13,679   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.9.dev14-py3-none-any.whl size=28552 sha256=b7bcd42a9c7c939c58ab0b5c0159ffab512e63ccb61bbb36e21204a7560f54a8
2021-03-29T23:23:13,680   Stored in directory: /tmp/pip-ephem-wheel-cache-trzy61u5/wheels/38/6a/55/7857c76e1ef367bb082d3c8e08dcd1b7781461307735ffd58d
2021-03-29T23:23:13,699 Successfully built ebi-eva-common-pyutils
2021-03-29T23:23:13,709 Removed build tracker: '/tmp/pip-req-tracker-g6dmm0_v'