2021-03-30T03:25:14,644 Created temporary directory: /tmp/pip-ephem-wheel-cache-77ellwbg
2021-03-30T03:25:14,647 Created temporary directory: /tmp/pip-req-tracker-pi06i7fz
2021-03-30T03:25:14,647 Initialized build tracking at /tmp/pip-req-tracker-pi06i7fz
2021-03-30T03:25:14,647 Created build tracker: /tmp/pip-req-tracker-pi06i7fz
2021-03-30T03:25:14,648 Entered build tracker: /tmp/pip-req-tracker-pi06i7fz
2021-03-30T03:25:14,648 Created temporary directory: /tmp/pip-wheel-xwkcr7if
2021-03-30T03:25:14,684 1 location(s) to search for versions of cytohmm:
2021-03-30T03:25:14,684 * https://pypi.org/simple/cytohmm/
2021-03-30T03:25:14,685 Fetching project page and analyzing links: https://pypi.org/simple/cytohmm/
2021-03-30T03:25:14,685 Getting page https://pypi.org/simple/cytohmm/
2021-03-30T03:25:14,687 Found index url https://pypi.org/simple
2021-03-30T03:25:14,778   Found link https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e (from https://pypi.org/simple/cytohmm/), version: 0.0.1
2021-03-30T03:25:14,779   Found link https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 (from https://pypi.org/simple/cytohmm/), version: 0.0.2
2021-03-30T03:25:14,779   Found link https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449 (from https://pypi.org/simple/cytohmm/), version: 0.0.3
2021-03-30T03:25:14,793 Given no hashes to check 1 links for project 'cytohmm': discarding no candidates
2021-03-30T03:25:14,808 Collecting cytohmm==0.0.3
2021-03-30T03:25:14,810   Created temporary directory: /tmp/pip-unpack-r9clt1g3
2021-03-30T03:25:14,858   Downloading cytohmm-0.0.3.tar.gz (103 kB)
2021-03-30T03:25:15,177   Added cytohmm==0.0.3 from https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449 to build tracker '/tmp/pip-req-tracker-pi06i7fz'
2021-03-30T03:25:15,178     Running setup.py (path:/tmp/pip-wheel-xwkcr7if/cytohmm_4781d508af3144deaa3c76f67d31e7e1/setup.py) egg_info for package cytohmm
2021-03-30T03:25:15,179     Created temporary directory: /tmp/pip-pip-egg-info-egmnv6nz
2021-03-30T03:25:15,179     Running command python setup.py egg_info
2021-03-30T03:25:17,266     running egg_info
2021-03-30T03:25:17,268     creating /tmp/pip-pip-egg-info-egmnv6nz/cytohmm.egg-info
2021-03-30T03:25:17,269     writing /tmp/pip-pip-egg-info-egmnv6nz/cytohmm.egg-info/PKG-INFO
2021-03-30T03:25:17,273     writing dependency_links to /tmp/pip-pip-egg-info-egmnv6nz/cytohmm.egg-info/dependency_links.txt
2021-03-30T03:25:17,275     writing top-level names to /tmp/pip-pip-egg-info-egmnv6nz/cytohmm.egg-info/top_level.txt
2021-03-30T03:25:17,277     writing manifest file '/tmp/pip-pip-egg-info-egmnv6nz/cytohmm.egg-info/SOURCES.txt'
2021-03-30T03:25:17,421     reading manifest file '/tmp/pip-pip-egg-info-egmnv6nz/cytohmm.egg-info/SOURCES.txt'
2021-03-30T03:25:17,423     reading manifest template 'MANIFEST.in'
2021-03-30T03:25:17,435     writing manifest file '/tmp/pip-pip-egg-info-egmnv6nz/cytohmm.egg-info/SOURCES.txt'
2021-03-30T03:25:17,555   Source in /tmp/pip-wheel-xwkcr7if/cytohmm_4781d508af3144deaa3c76f67d31e7e1 has version 0.0.3, which satisfies requirement cytohmm==0.0.3 from https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449
2021-03-30T03:25:17,556   Removed cytohmm==0.0.3 from https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449 from build tracker '/tmp/pip-req-tracker-pi06i7fz'
2021-03-30T03:25:17,561 Created temporary directory: /tmp/pip-unpack-7x9i3f7b
2021-03-30T03:25:17,561 Building wheels for collected packages: cytohmm
2021-03-30T03:25:17,566   Created temporary directory: /tmp/pip-wheel-ki7ievhx
2021-03-30T03:25:17,566   Building wheel for cytohmm (setup.py): started
2021-03-30T03:25:17,567   Destination directory: /tmp/pip-wheel-ki7ievhx
2021-03-30T03:25:17,567   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xwkcr7if/cytohmm_4781d508af3144deaa3c76f67d31e7e1/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xwkcr7if/cytohmm_4781d508af3144deaa3c76f67d31e7e1/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ki7ievhx
2021-03-30T03:25:19,536   running bdist_wheel
2021-03-30T03:25:19,541   running build
2021-03-30T03:25:19,541   running build_py
2021-03-30T03:25:19,669   creating build
2021-03-30T03:25:19,669   creating build/lib.linux-armv7l-3.7
2021-03-30T03:25:19,670   creating build/lib.linux-armv7l-3.7/cytohmm
2021-03-30T03:25:19,672   copying src/cytohmm/sequence_segmenter.py -> build/lib.linux-armv7l-3.7/cytohmm
2021-03-30T03:25:19,674   copying src/cytohmm/__init__.py -> build/lib.linux-armv7l-3.7/cytohmm
2021-03-30T03:25:19,677   running build_ext
2021-03-30T03:25:19,683   building 'cytohmm.markov_chain' extension
2021-03-30T03:25:19,683   creating build/temp.linux-armv7l-3.7
2021-03-30T03:25:19,684   creating build/temp.linux-armv7l-3.7/src
2021-03-30T03:25:19,685   creating build/temp.linux-armv7l-3.7/src/cytohmm
2021-03-30T03:25:19,686   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/cytohmm/markov_chain.c -o build/temp.linux-armv7l-3.7/src/cytohmm/markov_chain.o
2021-03-30T03:25:20,140   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-03-30T03:25:20,140                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-03-30T03:25:20,140                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-03-30T03:25:20,141                    from src/cytohmm/markov_chain.c:632:
2021-03-30T03:25:20,141   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-03-30T03:25:20,141    #warning "Using deprecated NumPy API, disable it with " \
2021-03-30T03:25:20,141     ^~~~~~~
2021-03-30T03:25:30,366   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/cytohmm/markov_chain.o -o build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so
2021-03-30T03:25:30,530   building 'cytohmm.likelihood' extension
2021-03-30T03:25:30,531   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/cytohmm/likelihood.c -o build/temp.linux-armv7l-3.7/src/cytohmm/likelihood.o
2021-03-30T03:25:30,879   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-03-30T03:25:30,879                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-03-30T03:25:30,879                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-03-30T03:25:30,879                    from src/cytohmm/likelihood.c:632:
2021-03-30T03:25:30,879   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-03-30T03:25:30,880    #warning "Using deprecated NumPy API, disable it with " \
2021-03-30T03:25:30,880     ^~~~~~~
2021-03-30T03:25:38,045   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/cytohmm/likelihood.o -o build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so
2021-03-30T03:25:38,194   installing to build/bdist.linux-armv7l/wheel
2021-03-30T03:25:38,194   running install
2021-03-30T03:25:38,195   running install_lib
2021-03-30T03:25:38,201   creating build/bdist.linux-armv7l
2021-03-30T03:25:38,201   creating build/bdist.linux-armv7l/wheel
2021-03-30T03:25:38,203   creating build/bdist.linux-armv7l/wheel/cytohmm
2021-03-30T03:25:38,205   copying build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-30T03:25:38,222   copying build/lib.linux-armv7l-3.7/cytohmm/sequence_segmenter.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-30T03:25:38,225   copying build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-30T03:25:38,236   copying build/lib.linux-armv7l-3.7/cytohmm/__init__.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-03-30T03:25:38,238   running install_egg_info
2021-03-30T03:25:38,263   running egg_info
2021-03-30T03:25:38,263   writing cytohmm.egg-info/PKG-INFO
2021-03-30T03:25:38,266   writing dependency_links to cytohmm.egg-info/dependency_links.txt
2021-03-30T03:25:38,268   writing top-level names to cytohmm.egg-info/top_level.txt
2021-03-30T03:25:38,274   reading manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-03-30T03:25:38,277   reading manifest template 'MANIFEST.in'
2021-03-30T03:25:38,289   writing manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-03-30T03:25:38,291   Copying cytohmm.egg-info to build/bdist.linux-armv7l/wheel/cytohmm-0.0.3-py3.7.egg-info
2021-03-30T03:25:38,305   running install_scripts
2021-03-30T03:25:38,349   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-03-30T03:25:38,356   creating build/bdist.linux-armv7l/wheel/cytohmm-0.0.3.dist-info/WHEEL
2021-03-30T03:25:38,359   creating '/tmp/pip-wheel-ki7ievhx/cytohmm-0.0.3-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-03-30T03:25:38,362   adding 'cytohmm/__init__.py'
2021-03-30T03:25:38,445   adding 'cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so'
2021-03-30T03:25:38,551   adding 'cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so'
2021-03-30T03:25:38,556   adding 'cytohmm/sequence_segmenter.py'
2021-03-30T03:25:38,559   adding 'cytohmm-0.0.3.dist-info/LICENSE'
2021-03-30T03:25:38,560   adding 'cytohmm-0.0.3.dist-info/METADATA'
2021-03-30T03:25:38,561   adding 'cytohmm-0.0.3.dist-info/WHEEL'
2021-03-30T03:25:38,562   adding 'cytohmm-0.0.3.dist-info/top_level.txt'
2021-03-30T03:25:38,562   adding 'cytohmm-0.0.3.dist-info/RECORD'
2021-03-30T03:25:38,568   removing build/bdist.linux-armv7l/wheel
2021-03-30T03:25:38,707   Building wheel for cytohmm (setup.py): finished with status 'done'
2021-03-30T03:25:38,713   Created wheel for cytohmm: filename=cytohmm-0.0.3-cp37-cp37m-linux_armv7l.whl size=345332 sha256=44380bcb6254f1329a5ce6957586207f03debb93be2f73c169a4e98d359b2aa1
2021-03-30T03:25:38,713   Stored in directory: /tmp/pip-ephem-wheel-cache-77ellwbg/wheels/92/c9/dd/d2e7f4f48b8e49fab47ec374cf38dbb5b396016586734601ef
2021-03-30T03:25:38,723 Successfully built cytohmm
2021-03-30T03:25:38,738 Removed build tracker: '/tmp/pip-req-tracker-pi06i7fz'