2021-04-03T15:15:08,949 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-04-03T15:15:09,677 Created temporary directory: /tmp/pip-ephem-wheel-cache-m0scf9b0
2021-04-03T15:15:09,682 Created temporary directory: /tmp/pip-req-tracker-bj2t3s8q
2021-04-03T15:15:09,683 Initialized build tracking at /tmp/pip-req-tracker-bj2t3s8q
2021-04-03T15:15:09,683 Created build tracker: /tmp/pip-req-tracker-bj2t3s8q
2021-04-03T15:15:09,684 Entered build tracker: /tmp/pip-req-tracker-bj2t3s8q
2021-04-03T15:15:09,685 Created temporary directory: /tmp/pip-wheel-3l3_zrsj
2021-04-03T15:15:09,761 1 location(s) to search for versions of dark-matter:
2021-04-03T15:15:09,761 * https://pypi.org/simple/dark-matter/
2021-04-03T15:15:09,762 Fetching project page and analyzing links: https://pypi.org/simple/dark-matter/
2021-04-03T15:15:09,764 Getting page https://pypi.org/simple/dark-matter/
2021-04-03T15:15:09,769 Found index url https://pypi.org/simple
2021-04-03T15:15:10,474   Found link https://files.pythonhosted.org/packages/7a/5d/5704534d2e83673ec3c8534b39fe1a3f071291761d421803f6b2f04ca6b3/dark-matter-1.0.0.tar.gz#sha256=e915679610d0e94ca32b047d9ef8db6bb16aca43edbba1f7ea13d8f9a00b77d7 (from https://pypi.org/simple/dark-matter/), version: 1.0.0
2021-04-03T15:15:10,476   Found link https://files.pythonhosted.org/packages/4a/50/cc5fbbe75b550d6819af04e15ffc633d99b636f2e2d3c22ca4fc09ba2380/dark-matter-1.0.11.tar.gz#sha256=4157ac389269821b5c3a2de3b32922bf437df79e858f2ae8c7293479d393c90b (from https://pypi.org/simple/dark-matter/), version: 1.0.11
2021-04-03T15:15:10,477   Found link https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 (from https://pypi.org/simple/dark-matter/), version: 1.0.12
2021-04-03T15:15:10,478   Found link https://files.pythonhosted.org/packages/42/69/f0d13d1e43ec50d1ca85b70c27cc5333f85186668700544a7661c4d6d374/dark-matter-1.0.13.tar.gz#sha256=4b061448407711cab985c60762244028d74b32a322d7329a63138e4080d110d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.13
2021-04-03T15:15:10,479   Found link https://files.pythonhosted.org/packages/30/5a/9c56b0639b13c2c78cad8ac304e9c5d834eed0cab07d0dcd780b7be47249/dark-matter-1.0.16.tar.gz#sha256=c0c11585b9a71c47aa248794779111a9ab30c48e32e17540f95347d98ce116a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.16
2021-04-03T15:15:10,480   Found link https://files.pythonhosted.org/packages/26/8d/eb629def26e051253c4070e70dfc7c8258d513b2685fe4e92bb975b6e613/dark-matter-1.0.19.tar.gz#sha256=4944ba9c898e0b956b6a8c0b8e78e5aa91579ac469885c61e70d71e89f92883d (from https://pypi.org/simple/dark-matter/), version: 1.0.19
2021-04-03T15:15:10,480   Found link https://files.pythonhosted.org/packages/6d/6f/755f4b72e91ce15571d5884761d34627eba8dc173005bc8d41a2e4d2ec81/dark-matter-1.0.27.tar.gz#sha256=70b765fdc0932137cb1ee2b9183018261c218fd27c87a3f3ab5fabb93a9d0e3c (from https://pypi.org/simple/dark-matter/), version: 1.0.27
2021-04-03T15:15:10,481   Found link https://files.pythonhosted.org/packages/c1/41/a8cb27f9a68dd388473a594c0a5cb162fb1518d16197c357ec3617e9631c/dark-matter-1.0.32.tar.gz#sha256=405b6a4a51ac4c1660435c882fb548d1e6ad1a889779b3893bddf5f876732eef (from https://pypi.org/simple/dark-matter/), version: 1.0.32
2021-04-03T15:15:10,482   Found link https://files.pythonhosted.org/packages/26/f5/ea2b1d090cd00bb769d4e07cc4b697373c58dac65a52cf442a4f60a833ba/dark-matter-1.0.34.tar.gz#sha256=8fe1d83a0b0476164c5a4ca8197890e1936ed0d66a689870a71676a14f671539 (from https://pypi.org/simple/dark-matter/), version: 1.0.34
2021-04-03T15:15:10,483   Found link https://files.pythonhosted.org/packages/1d/a3/954c4ab15080556dbb33a1c2053ce9028b51cb160099978332b9252b5f93/dark-matter-1.0.36.tar.gz#sha256=9f639deedd5d4e4da0276c9a6780288c5d78e95b0c5b69d08b312ed10cc10d25 (from https://pypi.org/simple/dark-matter/), version: 1.0.36
2021-04-03T15:15:10,484   Found link https://files.pythonhosted.org/packages/fd/f7/352dcf1f8fb13001175a73acb52fff4bc20760300f87459d7e1e967823a1/dark-matter-1.0.38.tar.gz#sha256=b506f4177d9334da17c7fdd2054944851b96c3872be6d00cd5ece2de2ddc7d82 (from https://pypi.org/simple/dark-matter/), version: 1.0.38
2021-04-03T15:15:10,485   Found link https://files.pythonhosted.org/packages/17/94/5d0c424a52cc3d16793cef2a6b38a8a3542c4bda072c49d61efd18a1ec60/dark-matter-1.0.40.tar.gz#sha256=6e38036fc94ef7817c18d607b937b916ef1caafe40fe072d4748306b2e646a1f (from https://pypi.org/simple/dark-matter/), version: 1.0.40
2021-04-03T15:15:10,486   Found link https://files.pythonhosted.org/packages/4c/d7/9fa11fcb1f9923e3e980f1b493791ca3fbe6920a68a939971fb1eb333d05/dark-matter-1.0.41.tar.gz#sha256=e6e0364aa69a1fef4621e7d016839a3dffbcddff5d575ba4ee7f4af5cebd754d (from https://pypi.org/simple/dark-matter/), version: 1.0.41
2021-04-03T15:15:10,487   Found link https://files.pythonhosted.org/packages/1b/bb/9a2bffcc74c3bb8c2f45106443174a74dbe3424e45eb483ba7bf72da1fe2/dark-matter-1.0.42.tar.gz#sha256=2540312ed60fed3f5a52b5ec60409e712c8a562569baa132be6ab0c53edbec83 (from https://pypi.org/simple/dark-matter/), version: 1.0.42
2021-04-03T15:15:10,488   Found link https://files.pythonhosted.org/packages/e2/dd/cb0a17ce78d39d3b6d6dc93f54c49069b722569042312f7044143a67af30/dark-matter-1.0.43.tar.gz#sha256=17548e06b695864df72afb4e6664261333612b991373745f4e68f99ed48ace5f (from https://pypi.org/simple/dark-matter/), version: 1.0.43
2021-04-03T15:15:10,489   Found link https://files.pythonhosted.org/packages/88/ee/c6e7d4142ee1baca46ff0d7f295b7d5a4059648c815de4223f873f17a448/dark-matter-1.0.44.tar.gz#sha256=468d2be2ad00ddcdfafe52f09a6a8971b40964e816fdb95de2772d32879d3fc5 (from https://pypi.org/simple/dark-matter/), version: 1.0.44
2021-04-03T15:15:10,490   Found link https://files.pythonhosted.org/packages/7e/71/19001567a982f1ea235095e6f2042990e0666c343bfd985b2c2b8a6a6edc/dark-matter-1.0.45.tar.gz#sha256=b60e397a82b3183fae2cdee32ac92f43f4533bcb5a7683d5fc3e58dd6ceee4fd (from https://pypi.org/simple/dark-matter/), version: 1.0.45
2021-04-03T15:15:10,491   Found link https://files.pythonhosted.org/packages/9b/71/0395a4c77fc9443e4b1c8d6d3787d527c2d06ecf56c75db9779bb602d594/dark-matter-1.0.46.tar.gz#sha256=66aaa9872db60c407b047f5e997c8155fe0626df9222b251a6f65b15ca4d3423 (from https://pypi.org/simple/dark-matter/), version: 1.0.46
2021-04-03T15:15:10,492   Found link https://files.pythonhosted.org/packages/85/3b/b68351e5280d2f65b26ca3e225a5a0385d921a6d25cef62563eeaec42343/dark-matter-1.0.47.tar.gz#sha256=b51c372b06fe94fcc93f8795aa5d2b2a547108934cc5c429e89972cdea153baf (from https://pypi.org/simple/dark-matter/), version: 1.0.47
2021-04-03T15:15:10,493   Found link https://files.pythonhosted.org/packages/fb/4c/6e27c41b817fc86240a956472978b226008da91e8c2b2b5dd991091c3a2d/dark-matter-1.0.48.tar.gz#sha256=e9ca7aad5b5631658d2ab154108568faa6196f7cea8dfaef1881d0013a3c59bd (from https://pypi.org/simple/dark-matter/), version: 1.0.48
2021-04-03T15:15:10,493   Found link https://files.pythonhosted.org/packages/07/65/1253b1fcd6c75fbbc19eee09982ec62023742959583d6687c666befffb71/dark-matter-1.0.49.tar.gz#sha256=7fe2af86f08e9e2416869c8fa571fc79b5a6965d4e2e9624536984a6ede94d5e (from https://pypi.org/simple/dark-matter/), version: 1.0.49
2021-04-03T15:15:10,494   Found link https://files.pythonhosted.org/packages/ac/93/e94fa7a2455aa54ebc294bb5bd93c11aca3c461073aee1fab28b4ee380ae/dark-matter-1.0.50.tar.gz#sha256=cd9ce5690ff46e8a27b17505dc500d0dc065bb403d6aa731615fbcfa0e9ecb50 (from https://pypi.org/simple/dark-matter/), version: 1.0.50
2021-04-03T15:15:10,495   Found link https://files.pythonhosted.org/packages/b9/ce/7d74daae572ebb32ffdbd439440361f5bf39eb9f9d0f55654878cbd7cbb2/dark-matter-1.0.51.tar.gz#sha256=ca7762302eb529ec15dbc0bba35397dc018cb3b43b371b02495ba1caa8fc6fe2 (from https://pypi.org/simple/dark-matter/), version: 1.0.51
2021-04-03T15:15:10,496   Found link https://files.pythonhosted.org/packages/cd/fb/8ff473df5992d3cdfc57151ff5595561c42fff343fcc01c76f3b95cd1eb9/dark-matter-1.0.52.tar.gz#sha256=7c5cadd1c74c4c85d55ec808f2ecd1a86abf726b7f3dc4b8755a32dc81a57094 (from https://pypi.org/simple/dark-matter/), version: 1.0.52
2021-04-03T15:15:10,497   Found link https://files.pythonhosted.org/packages/d4/a7/8e4a7fc079ce3324a605902fb7fe865ab846ba3376408987680cc68703c7/dark-matter-1.0.53.tar.gz#sha256=c06386be8fc1f85e76fc6f7c6b8ea6597503a9c238e5368e0975f18ea9fe3f6a (from https://pypi.org/simple/dark-matter/), version: 1.0.53
2021-04-03T15:15:10,498   Found link https://files.pythonhosted.org/packages/a8/50/55d45de9c1903904647e651a955b56dff452d61f9e095a5004a149ab2eca/dark-matter-1.0.54.tar.gz#sha256=cb4fefda8208eb0d40c4b172c30286b4be960018e89c89aacb94f177cbd0a77a (from https://pypi.org/simple/dark-matter/), version: 1.0.54
2021-04-03T15:15:10,499   Found link https://files.pythonhosted.org/packages/47/41/cc272f599662d184f754abc67ee763ac9da02c5d9ef5d1155effe67d132f/dark-matter-1.0.55.tar.gz#sha256=d1b4537860411417b98b32252f8a363623c263464c32d994cd442de74e36d4d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.55
2021-04-03T15:15:10,500   Found link https://files.pythonhosted.org/packages/d3/d8/250e7506219460c7da81f6f51bf93cce13d21b461392dcbfa1311e504a95/dark-matter-1.0.56.tar.gz#sha256=d5cbddab4a2b8cc948329f46660259c2bb30b866446ddfc12e8c6b8ddc9822ff (from https://pypi.org/simple/dark-matter/), version: 1.0.56
2021-04-03T15:15:10,501   Found link https://files.pythonhosted.org/packages/81/c7/3bf4ec17c4f0e02ca7741f7ede49d58680f12b48a4a7350031ffe8b38ba1/dark-matter-1.0.57.tar.gz#sha256=3d33c771486b56c8a4dd10fb70f91e4c0ce1d279d05cbdf6dac92cceffb35809 (from https://pypi.org/simple/dark-matter/), version: 1.0.57
2021-04-03T15:15:10,502   Found link https://files.pythonhosted.org/packages/f1/d5/6e02cb418664b484f16ea42b60a86add44acf56dda4875001528957c27b2/dark-matter-1.0.58.tar.gz#sha256=6a9e75658cacc7ae7e9926d0debd5605e15e5761452455e4f65c96b3cd947c6b (from https://pypi.org/simple/dark-matter/), version: 1.0.58
2021-04-03T15:15:10,503   Found link https://files.pythonhosted.org/packages/5a/d3/a69ed2feeac3afcb852a8bcce6cadd5b541cd78de3756f0519a62ca29371/dark-matter-1.0.59.tar.gz#sha256=1f0c71e01cce5ca62b1599c974ff24b8b211349f880c365ecbdce369c6877280 (from https://pypi.org/simple/dark-matter/), version: 1.0.59
2021-04-03T15:15:10,504   Found link https://files.pythonhosted.org/packages/68/70/96bd4a89d1c5f40e05d734be94ae1571be35c0b4c4e19e22c0be893c9e1c/dark-matter-1.0.60.tar.gz#sha256=933a4cc3f34ed03198cacedaab9cc0915402bfff0ad238a0f879c7b246243f02 (from https://pypi.org/simple/dark-matter/), version: 1.0.60
2021-04-03T15:15:10,505   Found link https://files.pythonhosted.org/packages/55/52/ab50ff5d12bb5efd1171a964a4f5baa03edb0091dfa5c79af08fbbe4da16/dark-matter-1.0.61.tar.gz#sha256=09e5bdfd05c954d34fc87541f61a416169ae53daea1a22723de915a9f50ea9e4 (from https://pypi.org/simple/dark-matter/), version: 1.0.61
2021-04-03T15:15:10,506   Found link https://files.pythonhosted.org/packages/ab/de/cc9a342e642f66e60c8ff98d1786229d5cfcfb0306158f0c19ef61059303/dark-matter-1.0.62.tar.gz#sha256=6f7347e0923abd2eb2118862a03966c5204262e5d496e11900de3aed43724265 (from https://pypi.org/simple/dark-matter/), version: 1.0.62
2021-04-03T15:15:10,507   Found link https://files.pythonhosted.org/packages/cd/a5/713b8a9f25437fafe2a34291ca34f945c9e1394c2e600f73e5abd8e3282e/dark-matter-1.0.63.tar.gz#sha256=fca60020cce6b249f61f6ae5e268dbd20f71a2d257bb668c84313ca29d6873b1 (from https://pypi.org/simple/dark-matter/), version: 1.0.63
2021-04-03T15:15:10,508   Found link https://files.pythonhosted.org/packages/77/fe/320a21e0c4c116bd28487af7156a9937a90dcc44f70c4f720267e9b14291/dark-matter-1.0.64.tar.gz#sha256=d1c1764b08f3fbdf71f46a5f9acbe0deadb96d5af5b4b99d8b19e13e4abe9e3d (from https://pypi.org/simple/dark-matter/), version: 1.0.64
2021-04-03T15:15:10,509   Found link https://files.pythonhosted.org/packages/a0/08/9be54a6570a6acf6f87d5ca8ff9f91660697fc32212d0be3601785e796b9/dark-matter-1.0.65.tar.gz#sha256=1332fafc881be70d395aa69ed174c0036941f2d4f8e170f24ba6c0fa14397de6 (from https://pypi.org/simple/dark-matter/), version: 1.0.65
2021-04-03T15:15:10,510   Found link https://files.pythonhosted.org/packages/7b/61/46caedf674111789641d78a4252b26d1ea43d3d8c77f906b3abc7c638acc/dark-matter-1.0.66.tar.gz#sha256=a0ad6f3e8afe8294c1aa5011577533334d2a6cbb16eaaa9b48a451fe0a9db293 (from https://pypi.org/simple/dark-matter/), version: 1.0.66
2021-04-03T15:15:10,511   Found link https://files.pythonhosted.org/packages/97/54/fc8129e31460a4007b2d328e37efeb55a3488b7a7a34592e0c738ac27079/dark-matter-1.0.67.tar.gz#sha256=709dbe5d0c6df732587900ea0ee3a8508fd43a37d7aff3ec5387bbee7d7917cd (from https://pypi.org/simple/dark-matter/), version: 1.0.67
2021-04-03T15:15:10,512   Found link https://files.pythonhosted.org/packages/e5/33/890848c35cb392c57712943c79ffe317ce401bd2db2a616637719f8c5522/dark-matter-1.0.68.tar.gz#sha256=5426893dee726d1f3da0d38176f4489d983e698b36586b2a5d4030ccfd38ae9f (from https://pypi.org/simple/dark-matter/), version: 1.0.68
2021-04-03T15:15:10,513   Found link https://files.pythonhosted.org/packages/c2/23/5e4253583920bada6ee2f5204fbaf8a745527f8ba5c585ac8891fa959991/dark-matter-1.0.69.tar.gz#sha256=494ab515566d76d337f7b25186921029e01e84460ae1f2d81c355a9ae135a18c (from https://pypi.org/simple/dark-matter/), version: 1.0.69
2021-04-03T15:15:10,514   Found link https://files.pythonhosted.org/packages/3d/6a/1cf82dcc5f77ac300a3ee4c1fce72edad81280795e42f0da80b67b3a1838/dark-matter-1.0.70.tar.gz#sha256=f74facc816c78353ee9cdeeac334e9e03d05c38cc381588def6443125fe7ff17 (from https://pypi.org/simple/dark-matter/), version: 1.0.70
2021-04-03T15:15:10,515   Found link https://files.pythonhosted.org/packages/64/9a/ace6de00719320e68408c58f3abe036645a29901f17e3e1cd356260cb9f5/dark-matter-1.0.71.tar.gz#sha256=f0ed0a32bf00786a18d3b50596ad79ec24f01ed3fa9d56f36efec9db58a750a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.71
2021-04-03T15:15:10,516   Found link https://files.pythonhosted.org/packages/94/d0/a1e5aabab8ad66683757b3b0569d672da3528a5a8619f830f33c2d6bb179/dark-matter-1.0.72.tar.gz#sha256=3cab3d9241f6fccf0e1a88ed3f572b90bd296c41810b85b49054ba4238742061 (from https://pypi.org/simple/dark-matter/), version: 1.0.72
2021-04-03T15:15:10,517   Found link https://files.pythonhosted.org/packages/a2/1a/f7d17f7e7d196b1fb5382a27adc6ae61bbc4c47ad812c9e78de890b61743/dark-matter-1.0.73.tar.gz#sha256=ef4359ea0a02e00b3f1b06754da34fb6cfbe030ecd3976dac50841c0ae46c062 (from https://pypi.org/simple/dark-matter/), version: 1.0.73
2021-04-03T15:15:10,518   Found link https://files.pythonhosted.org/packages/8e/dc/f8fbeb00d964a029f3e444ed65ba9ca0f69e83c4b19d93efb858ac9d67cf/dark-matter-1.0.74.tar.gz#sha256=90c2fc0dcc27bbd558041ae982768c630c602360754f3e07577c2711966c1fb7 (from https://pypi.org/simple/dark-matter/), version: 1.0.74
2021-04-03T15:15:10,519   Found link https://files.pythonhosted.org/packages/26/50/60d51f6d26ec912a10cd058c4221c4794813080bcccd2f5af993a2bfe973/dark-matter-1.0.75.tar.gz#sha256=9db8994744be84b8d67035bff720b4b8330e8682339d3bef01a857210d400c50 (from https://pypi.org/simple/dark-matter/), version: 1.0.75
2021-04-03T15:15:10,520   Found link https://files.pythonhosted.org/packages/03/bb/45b48f894b2b3f2a08e9e3c3c07ce133db94e91a363688f3ab9ce4969d80/dark-matter-1.0.76.tar.gz#sha256=940772c257a0f785f0f5efa53a7075692b5fa889a6c1d3432e17929fc30a1179 (from https://pypi.org/simple/dark-matter/), version: 1.0.76
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2021-04-03T15:15:10,725   Found link https://files.pythonhosted.org/packages/fe/74/37ca77e38cc0080fbe164321e7ab6be1552960f966c11c12ba6a138c1cdb/dark-matter-3.2.3.tar.gz#sha256=51d99ef9b8c7628613fed3519fac86d2575c56f4977150d0ec017a440b869692 (from https://pypi.org/simple/dark-matter/), version: 3.2.3
2021-04-03T15:15:10,726   Found link https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 (from https://pypi.org/simple/dark-matter/), version: 3.2.4
2021-04-03T15:15:10,727   Found link https://files.pythonhosted.org/packages/95/55/bb9433858a72e5030fe4579502698e18fe9f21ec51f4d34a9f3f33913aed/dark-matter-3.2.5.tar.gz#sha256=1a31e2be7d17f7a47cc07b566ed2a822559fb09072efda9827666ba83d560c41 (from https://pypi.org/simple/dark-matter/), version: 3.2.5
2021-04-03T15:15:10,728   Found link https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a (from https://pypi.org/simple/dark-matter/), version: 3.2.6
2021-04-03T15:15:10,880 Given no hashes to check 1 links for project 'dark-matter': discarding no candidates
2021-04-03T15:15:10,922 Collecting dark-matter==3.2.6
2021-04-03T15:15:10,925   Created temporary directory: /tmp/pip-unpack-gs49fprt
2021-04-03T15:15:11,199   Downloading dark-matter-3.2.6.tar.gz (324 kB)
2021-04-03T15:15:12,577   Added dark-matter==3.2.6 from https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a to build tracker '/tmp/pip-req-tracker-bj2t3s8q'
2021-04-03T15:15:12,581     Running setup.py (path:/tmp/pip-wheel-3l3_zrsj/dark-matter_1d9c526d33464fdd8545d642a61441db/setup.py) egg_info for package dark-matter
2021-04-03T15:15:12,583     Created temporary directory: /tmp/pip-pip-egg-info-q2y3n9ce
2021-04-03T15:15:12,584     Running command python setup.py egg_info
2021-04-03T15:15:14,979     running egg_info
2021-04-03T15:15:14,984     creating /tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info
2021-04-03T15:15:14,988     writing /tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info/PKG-INFO
2021-04-03T15:15:14,992     writing dependency_links to /tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info/dependency_links.txt
2021-04-03T15:15:14,996     writing requirements to /tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info/requires.txt
2021-04-03T15:15:14,998     writing top-level names to /tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info/top_level.txt
2021-04-03T15:15:15,002     writing manifest file '/tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info/SOURCES.txt'
2021-04-03T15:15:15,432     reading manifest file '/tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info/SOURCES.txt'
2021-04-03T15:15:15,466     writing manifest file '/tmp/pip-pip-egg-info-q2y3n9ce/dark_matter.egg-info/SOURCES.txt'
2021-04-03T15:15:15,738   Source in /tmp/pip-wheel-3l3_zrsj/dark-matter_1d9c526d33464fdd8545d642a61441db has version 3.2.6, which satisfies requirement dark-matter==3.2.6 from https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a
2021-04-03T15:15:15,739   Removed dark-matter==3.2.6 from https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a from build tracker '/tmp/pip-req-tracker-bj2t3s8q'
2021-04-03T15:15:15,748 Created temporary directory: /tmp/pip-unpack-ny2it29_
2021-04-03T15:15:15,749 Building wheels for collected packages: dark-matter
2021-04-03T15:15:15,757   Created temporary directory: /tmp/pip-wheel-1jq5c3kn
2021-04-03T15:15:15,758   Building wheel for dark-matter (setup.py): started
2021-04-03T15:15:15,759   Destination directory: /tmp/pip-wheel-1jq5c3kn
2021-04-03T15:15:15,759   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3l3_zrsj/dark-matter_1d9c526d33464fdd8545d642a61441db/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3l3_zrsj/dark-matter_1d9c526d33464fdd8545d642a61441db/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1jq5c3kn
2021-04-03T15:15:18,134   running bdist_wheel
2021-04-03T15:15:18,149   running build
2021-04-03T15:15:18,150   running build_py
2021-04-03T15:15:18,491   creating build
2021-04-03T15:15:18,493   creating build/lib
2021-04-03T15:15:18,495   creating build/lib/dark
2021-04-03T15:15:18,498   copying dark/intervals.py -> build/lib/dark
2021-04-03T15:15:18,504   copying dark/sam.py -> build/lib/dark
2021-04-03T15:15:18,511   copying dark/taxonomy.py -> build/lib/dark
2021-04-03T15:15:18,518   copying dark/process.py -> build/lib/dark
2021-04-03T15:15:18,524   copying dark/cigar.py -> build/lib/dark
2021-04-03T15:15:18,529   copying dark/entrez.py -> build/lib/dark
2021-04-03T15:15:18,535   copying dark/dna.py -> build/lib/dark
2021-04-03T15:15:18,542   copying dark/reads.py -> build/lib/dark
2021-04-03T15:15:18,552   copying dark/summarize.py -> build/lib/dark
2021-04-03T15:15:18,556   copying dark/aa.py -> build/lib/dark
2021-04-03T15:15:18,565   copying dark/alignments.py -> build/lib/dark
2021-04-03T15:15:18,573   copying dark/proteins.py -> build/lib/dark
2021-04-03T15:15:18,583   copying dark/html.py -> build/lib/dark
2021-04-03T15:15:18,590   copying dark/baseimage.py -> build/lib/dark
2021-04-03T15:15:18,596   copying dark/fasta.py -> build/lib/dark
2021-04-03T15:15:18,603   copying dark/ncbidb.py -> build/lib/dark
2021-04-03T15:15:18,609   copying dark/consensus.py -> build/lib/dark
2021-04-03T15:15:18,615   copying dark/utils.py -> build/lib/dark
2021-04-03T15:15:18,622   copying dark/fasta_ss.py -> build/lib/dark
2021-04-03T15:15:18,628   copying dark/analyze_reads.py -> build/lib/dark
2021-04-03T15:15:18,633   copying dark/features.py -> build/lib/dark
2021-04-03T15:15:18,640   copying dark/genomes.py -> build/lib/dark
2021-04-03T15:15:18,645   copying dark/dimension.py -> build/lib/dark
2021-04-03T15:15:18,649   copying dark/local_align.py -> build/lib/dark
2021-04-03T15:15:18,655   copying dark/bowtie2.py -> build/lib/dark
2021-04-03T15:15:18,661   copying dark/titles.py -> build/lib/dark
2021-04-03T15:15:18,669   copying dark/database.py -> build/lib/dark
2021-04-03T15:15:18,674   copying dark/colors.py -> build/lib/dark
2021-04-03T15:15:18,680   copying dark/genbank.py -> build/lib/dark
2021-04-03T15:15:18,685   copying dark/graphics.py -> build/lib/dark
2021-04-03T15:15:18,693   copying dark/codonDistance.py -> build/lib/dark
2021-04-03T15:15:18,697   copying dark/fastq.py -> build/lib/dark
2021-04-03T15:15:18,701   copying dark/filter.py -> build/lib/dark
2021-04-03T15:15:18,709   copying dark/hsp.py -> build/lib/dark
2021-04-03T15:15:18,716   copying dark/mutations.py -> build/lib/dark
2021-04-03T15:15:18,723   copying dark/sequence.py -> build/lib/dark
2021-04-03T15:15:18,729   copying dark/ipynb.py -> build/lib/dark
2021-04-03T15:15:18,735   copying dark/simplify.py -> build/lib/dark
2021-04-03T15:15:18,740   copying dark/distance.py -> build/lib/dark
2021-04-03T15:15:18,746   copying dark/orfs.py -> build/lib/dark
2021-04-03T15:15:18,751   copying dark/score.py -> build/lib/dark
2021-04-03T15:15:18,757   copying dark/errors.py -> build/lib/dark
2021-04-03T15:15:18,762   copying dark/fpcache.py -> build/lib/dark
2021-04-03T15:15:18,768   copying dark/btop.py -> build/lib/dark
2021-04-03T15:15:18,774   copying dark/aligners.py -> build/lib/dark
2021-04-03T15:15:18,780   copying dark/__init__.py -> build/lib/dark
2021-04-03T15:15:18,788   creating build/lib/dark/blast
2021-04-03T15:15:18,791   copying dark/blast/alignments.py -> build/lib/dark/blast
2021-04-03T15:15:18,799   copying dark/blast/params.py -> build/lib/dark/blast
2021-04-03T15:15:18,804   copying dark/blast/conversion.py -> build/lib/dark/blast
2021-04-03T15:15:18,810   copying dark/blast/records.py -> build/lib/dark/blast
2021-04-03T15:15:18,814   copying dark/blast/hacks.py -> build/lib/dark/blast
2021-04-03T15:15:18,818   copying dark/blast/hsp.py -> build/lib/dark/blast
2021-04-03T15:15:18,823   copying dark/blast/score.py -> build/lib/dark/blast
2021-04-03T15:15:18,829   copying dark/blast/__init__.py -> build/lib/dark/blast
2021-04-03T15:15:18,836   creating build/lib/dark/diamond
2021-04-03T15:15:18,839   copying dark/diamond/sam.py -> build/lib/dark/diamond
2021-04-03T15:15:18,846   copying dark/diamond/alignments.py -> build/lib/dark/diamond
2021-04-03T15:15:18,851   copying dark/diamond/conversion.py -> build/lib/dark/diamond
2021-04-03T15:15:18,857   copying dark/diamond/run.py -> build/lib/dark/diamond
2021-04-03T15:15:18,862   copying dark/diamond/hsp.py -> build/lib/dark/diamond
2021-04-03T15:15:18,868   copying dark/diamond/__init__.py -> build/lib/dark/diamond
2021-04-03T15:15:18,875   creating build/lib/dark/civ
2021-04-03T15:15:18,879   copying dark/civ/proteins.py -> build/lib/dark/civ
2021-04-03T15:15:18,896   copying dark/civ/html.py -> build/lib/dark/civ
2021-04-03T15:15:18,902   copying dark/civ/graphics.py -> build/lib/dark/civ
2021-04-03T15:15:18,910   copying dark/civ/__init__.py -> build/lib/dark/civ
2021-04-03T15:15:18,932   running build_scripts
2021-04-03T15:15:18,934   creating build/scripts-3.5
2021-04-03T15:15:18,938   copying and adjusting bin/aa-info.py -> build/scripts-3.5
2021-04-03T15:15:18,942   copying and adjusting bin/aa-to-dna.py -> build/scripts-3.5
2021-04-03T15:15:18,947   copying and adjusting bin/aa-to-properties.py -> build/scripts-3.5
2021-04-03T15:15:18,951   copying and adjusting bin/adaptor-distances.py -> build/scripts-3.5
2021-04-03T15:15:18,955   copying and adjusting bin/alignment-panel-civ.py -> build/scripts-3.5
2021-04-03T15:15:18,962   copying and adjusting bin/alignments-per-read.py -> build/scripts-3.5
2021-04-03T15:15:18,965   copying and adjusting bin/bit-score-to-e-value.py -> build/scripts-3.5
2021-04-03T15:15:18,969   copying and adjusting bin/cat-json-blast-records.py -> build/scripts-3.5
2021-04-03T15:15:18,973   copying and adjusting bin/check-fasta-json-blast-consistency.py -> build/scripts-3.5
2021-04-03T15:15:18,978   copying and adjusting bin/codon-distance.py -> build/scripts-3.5
2021-04-03T15:15:18,983   copying and adjusting bin/compare-consensuses.py -> build/scripts-3.5
2021-04-03T15:15:18,989   copying and adjusting bin/compare-sequences.py -> build/scripts-3.5
2021-04-03T15:15:18,994   copying and adjusting bin/convert-blast-xml-to-json.py -> build/scripts-3.5
2021-04-03T15:15:18,997   copying and adjusting bin/convert-diamond-to-json.py -> build/scripts-3.5
2021-04-03T15:15:19,001   copying and adjusting bin/convert-diamond-to-sam.py -> build/scripts-3.5
2021-04-03T15:15:19,005   copying bin/convert-sam-to-fastq.sh -> build/scripts-3.5
2021-04-03T15:15:19,011   copying and adjusting bin/create-newick-relabeling-output.py -> build/scripts-3.5
2021-04-03T15:15:19,016   copying and adjusting bin/dark-matter-version.py -> build/scripts-3.5
2021-04-03T15:15:19,020   copying and adjusting bin/describe-protein-database.py -> build/scripts-3.5
2021-04-03T15:15:19,024   copying and adjusting bin/dna-to-aa.py -> build/scripts-3.5
2021-04-03T15:15:19,030   copying bin/download-genbank.sh -> build/scripts-3.5
2021-04-03T15:15:19,036   copying and adjusting bin/e-value-to-bit-score.py -> build/scripts-3.5
2021-04-03T15:15:19,039   copying and adjusting bin/extract-ORFs.py -> build/scripts-3.5
2021-04-03T15:15:19,043   copying and adjusting bin/fasta-base-indices.py -> build/scripts-3.5
2021-04-03T15:15:19,047   copying and adjusting bin/fasta-count.py -> build/scripts-3.5
2021-04-03T15:15:19,051   copying bin/fasta-diff.sh -> build/scripts-3.5
2021-04-03T15:15:19,058   copying and adjusting bin/fasta-identity-table.py -> build/scripts-3.5
2021-04-03T15:15:19,068   copying and adjusting bin/fasta-ids.py -> build/scripts-3.5
2021-04-03T15:15:19,072   copying and adjusting bin/fasta-join.py -> build/scripts-3.5
2021-04-03T15:15:19,075   copying and adjusting bin/fasta-lengths.py -> build/scripts-3.5
2021-04-03T15:15:19,078   copying and adjusting bin/fasta-sequences.py -> build/scripts-3.5
2021-04-03T15:15:19,081   copying and adjusting bin/fasta-sort.py -> build/scripts-3.5
2021-04-03T15:15:19,084   copying and adjusting bin/fasta-split-by-id.py -> build/scripts-3.5
2021-04-03T15:15:19,088   copying and adjusting bin/fasta-subset.py -> build/scripts-3.5
2021-04-03T15:15:19,092   copying and adjusting bin/fasta-subtraction.py -> build/scripts-3.5
2021-04-03T15:15:19,095   copying and adjusting bin/fasta-to-phylip.py -> build/scripts-3.5
2021-04-03T15:15:19,098   copying and adjusting bin/fasta-variable-sites.py -> build/scripts-3.5
2021-04-03T15:15:19,102   copying and adjusting bin/filter-fasta-by-complexity.py -> build/scripts-3.5
2021-04-03T15:15:19,106   copying and adjusting bin/filter-fasta-by-taxonomy.py -> build/scripts-3.5
2021-04-03T15:15:19,111   copying and adjusting bin/filter-fasta.py -> build/scripts-3.5
2021-04-03T15:15:19,116   copying and adjusting bin/filter-hits-to-fasta.py -> build/scripts-3.5
2021-04-03T15:15:19,123   copying and adjusting bin/filter-reads-alignments.py -> build/scripts-3.5
2021-04-03T15:15:19,130   copying and adjusting bin/filter-sam.py -> build/scripts-3.5
2021-04-03T15:15:19,134   copying and adjusting bin/find-hits.py -> build/scripts-3.5
2021-04-03T15:15:19,138   copying and adjusting bin/format-fasta.py -> build/scripts-3.5
2021-04-03T15:15:19,141   copying and adjusting bin/genome-protein-summary.py -> build/scripts-3.5
2021-04-03T15:15:19,147   copying and adjusting bin/get-features.py -> build/scripts-3.5
2021-04-03T15:15:19,150   copying and adjusting bin/get-hosts.py -> build/scripts-3.5
2021-04-03T15:15:19,155   copying and adjusting bin/get-reads.py -> build/scripts-3.5
2021-04-03T15:15:19,161   copying and adjusting bin/get-taxonomy.py -> build/scripts-3.5
2021-04-03T15:15:19,166   copying and adjusting bin/graph-evalues.py -> build/scripts-3.5
2021-04-03T15:15:19,171   copying and adjusting bin/local-align.py -> build/scripts-3.5
2021-04-03T15:15:19,174   copying and adjusting bin/make-consensus.py -> build/scripts-3.5
2021-04-03T15:15:19,180   copying and adjusting bin/make-fasta-database.py -> build/scripts-3.5
2021-04-03T15:15:19,183   copying and adjusting bin/make-protein-database.py -> build/scripts-3.5
2021-04-03T15:15:19,189   copying and adjusting bin/ncbi-fetch-id.py -> build/scripts-3.5
2021-04-03T15:15:19,192   copying and adjusting bin/newick-to-ascii.py -> build/scripts-3.5
2021-04-03T15:15:19,197   copying and adjusting bin/noninteractive-alignment-panel.py -> build/scripts-3.5
2021-04-03T15:15:19,206   copying and adjusting bin/parse-genbank-flat-file.py -> build/scripts-3.5
2021-04-03T15:15:19,211   copying and adjusting bin/position-summary.py -> build/scripts-3.5
2021-04-03T15:15:19,215   copying bin/pre-commit.sh -> build/scripts-3.5
2021-04-03T15:15:19,220   copying and adjusting bin/print-blast-xml-for-derek.py -> build/scripts-3.5
2021-04-03T15:15:19,224   copying and adjusting bin/print-blast-xml.py -> build/scripts-3.5
2021-04-03T15:15:19,227   copying and adjusting bin/print-read-lengths.py -> build/scripts-3.5
2021-04-03T15:15:19,231   copying and adjusting bin/proteins-to-pathogens.py -> build/scripts-3.5
2021-04-03T15:15:19,238   copying and adjusting bin/proteins-to-pathogens-civ.py -> build/scripts-3.5
2021-04-03T15:15:19,246   copying and adjusting bin/randomize-fasta.py -> build/scripts-3.5
2021-04-03T15:15:19,250   copying and adjusting bin/read-blast-json.py -> build/scripts-3.5
2021-04-03T15:15:19,254   copying and adjusting bin/read-blast-xml.py -> build/scripts-3.5
2021-04-03T15:15:19,258   copying and adjusting bin/relabel-newick-tree.py -> build/scripts-3.5
2021-04-03T15:15:19,261   copying and adjusting bin/run-bwa.py -> build/scripts-3.5
2021-04-03T15:15:19,265   copying and adjusting bin/run-bowtie2.py -> build/scripts-3.5
2021-04-03T15:15:19,272   copying and adjusting bin/sam-coverage.py -> build/scripts-3.5
2021-04-03T15:15:19,277   copying and adjusting bin/sam-coverage-depth.py -> build/scripts-3.5
2021-04-03T15:15:19,283   copying and adjusting bin/sam-to-fasta-alignment.py -> build/scripts-3.5
2021-04-03T15:15:19,288   copying and adjusting bin/sam-reference-read-counts.py -> build/scripts-3.5
2021-04-03T15:15:19,293   copying and adjusting bin/sam-references.py -> build/scripts-3.5
2021-04-03T15:15:19,297   copying and adjusting bin/sff-to-fastq.py -> build/scripts-3.5
2021-04-03T15:15:19,300   copying and adjusting bin/split-fasta-by-adaptors.py -> build/scripts-3.5
2021-04-03T15:15:19,304   copying and adjusting bin/subset-protein-database.py -> build/scripts-3.5
2021-04-03T15:15:19,308   copying and adjusting bin/summarize-fasta-bases.py -> build/scripts-3.5
2021-04-03T15:15:19,312   copying and adjusting bin/summarize-reads.py -> build/scripts-3.5
2021-04-03T15:15:19,317   copying and adjusting bin/translate.py -> build/scripts-3.5
2021-04-03T15:15:19,321   copying and adjusting bin/trim-primers.py -> build/scripts-3.5
2021-04-03T15:15:19,326   copying and adjusting bin/trim-reads.py -> build/scripts-3.5
2021-04-03T15:15:19,331   copying and adjusting bin/write-htcondor-job-spec.py -> build/scripts-3.5
2021-04-03T15:15:19,336   changing mode of build/scripts-3.5/aa-info.py from 644 to 755
2021-04-03T15:15:19,336   changing mode of build/scripts-3.5/aa-to-dna.py from 644 to 755
2021-04-03T15:15:19,337   changing mode of build/scripts-3.5/aa-to-properties.py from 644 to 755
2021-04-03T15:15:19,338   changing mode of build/scripts-3.5/adaptor-distances.py from 644 to 755
2021-04-03T15:15:19,338   changing mode of build/scripts-3.5/alignment-panel-civ.py from 644 to 755
2021-04-03T15:15:19,339   changing mode of build/scripts-3.5/alignments-per-read.py from 644 to 755
2021-04-03T15:15:19,340   changing mode of build/scripts-3.5/bit-score-to-e-value.py from 644 to 755
2021-04-03T15:15:19,341   changing mode of build/scripts-3.5/cat-json-blast-records.py from 644 to 755
2021-04-03T15:15:19,341   changing mode of build/scripts-3.5/check-fasta-json-blast-consistency.py from 644 to 755
2021-04-03T15:15:19,342   changing mode of build/scripts-3.5/codon-distance.py from 644 to 755
2021-04-03T15:15:19,343   changing mode of build/scripts-3.5/compare-consensuses.py from 644 to 755
2021-04-03T15:15:19,343   changing mode of build/scripts-3.5/compare-sequences.py from 644 to 755
2021-04-03T15:15:19,344   changing mode of build/scripts-3.5/convert-blast-xml-to-json.py from 644 to 755
2021-04-03T15:15:19,345   changing mode of build/scripts-3.5/convert-diamond-to-json.py from 644 to 755
2021-04-03T15:15:19,346   changing mode of build/scripts-3.5/convert-diamond-to-sam.py from 644 to 755
2021-04-03T15:15:19,346   changing mode of build/scripts-3.5/create-newick-relabeling-output.py from 644 to 755
2021-04-03T15:15:19,347   changing mode of build/scripts-3.5/dark-matter-version.py from 644 to 755
2021-04-03T15:15:19,348   changing mode of build/scripts-3.5/describe-protein-database.py from 644 to 755
2021-04-03T15:15:19,349   changing mode of build/scripts-3.5/dna-to-aa.py from 644 to 755
2021-04-03T15:15:19,349   changing mode of build/scripts-3.5/e-value-to-bit-score.py from 644 to 755
2021-04-03T15:15:19,350   changing mode of build/scripts-3.5/extract-ORFs.py from 644 to 755
2021-04-03T15:15:19,351   changing mode of build/scripts-3.5/fasta-base-indices.py from 644 to 755
2021-04-03T15:15:19,352   changing mode of build/scripts-3.5/fasta-count.py from 644 to 755
2021-04-03T15:15:19,352   changing mode of build/scripts-3.5/fasta-identity-table.py from 644 to 755
2021-04-03T15:15:19,353   changing mode of build/scripts-3.5/fasta-ids.py from 644 to 755
2021-04-03T15:15:19,354   changing mode of build/scripts-3.5/fasta-join.py from 644 to 755
2021-04-03T15:15:19,355   changing mode of build/scripts-3.5/fasta-lengths.py from 644 to 755
2021-04-03T15:15:19,355   changing mode of build/scripts-3.5/fasta-sequences.py from 644 to 755
2021-04-03T15:15:19,356   changing mode of build/scripts-3.5/fasta-sort.py from 644 to 755
2021-04-03T15:15:19,357   changing mode of build/scripts-3.5/fasta-split-by-id.py from 644 to 755
2021-04-03T15:15:19,358   changing mode of build/scripts-3.5/fasta-subset.py from 644 to 755
2021-04-03T15:15:19,358   changing mode of build/scripts-3.5/fasta-subtraction.py from 644 to 755
2021-04-03T15:15:19,359   changing mode of build/scripts-3.5/fasta-to-phylip.py from 644 to 755
2021-04-03T15:15:19,360   changing mode of build/scripts-3.5/fasta-variable-sites.py from 644 to 755
2021-04-03T15:15:19,360   changing mode of build/scripts-3.5/filter-fasta-by-complexity.py from 644 to 755
2021-04-03T15:15:19,361   changing mode of build/scripts-3.5/filter-fasta-by-taxonomy.py from 644 to 755
2021-04-03T15:15:19,362   changing mode of build/scripts-3.5/filter-fasta.py from 644 to 755
2021-04-03T15:15:19,363   changing mode of build/scripts-3.5/filter-hits-to-fasta.py from 644 to 755
2021-04-03T15:15:19,363   changing mode of build/scripts-3.5/filter-reads-alignments.py from 644 to 755
2021-04-03T15:15:19,364   changing mode of build/scripts-3.5/filter-sam.py from 644 to 755
2021-04-03T15:15:19,365   changing mode of build/scripts-3.5/find-hits.py from 644 to 755
2021-04-03T15:15:19,365   changing mode of build/scripts-3.5/format-fasta.py from 644 to 755
2021-04-03T15:15:19,366   changing mode of build/scripts-3.5/genome-protein-summary.py from 644 to 755
2021-04-03T15:15:19,367   changing mode of build/scripts-3.5/get-features.py from 644 to 755
2021-04-03T15:15:19,368   changing mode of build/scripts-3.5/get-hosts.py from 644 to 755
2021-04-03T15:15:19,368   changing mode of build/scripts-3.5/get-reads.py from 644 to 755
2021-04-03T15:15:19,369   changing mode of build/scripts-3.5/get-taxonomy.py from 644 to 755
2021-04-03T15:15:19,370   changing mode of build/scripts-3.5/graph-evalues.py from 644 to 755
2021-04-03T15:15:19,370   changing mode of build/scripts-3.5/local-align.py from 644 to 755
2021-04-03T15:15:19,371   changing mode of build/scripts-3.5/make-consensus.py from 644 to 755
2021-04-03T15:15:19,372   changing mode of build/scripts-3.5/make-fasta-database.py from 644 to 755
2021-04-03T15:15:19,372   changing mode of build/scripts-3.5/make-protein-database.py from 644 to 755
2021-04-03T15:15:19,373   changing mode of build/scripts-3.5/ncbi-fetch-id.py from 644 to 755
2021-04-03T15:15:19,374   changing mode of build/scripts-3.5/newick-to-ascii.py from 644 to 755
2021-04-03T15:15:19,375   changing mode of build/scripts-3.5/noninteractive-alignment-panel.py from 644 to 755
2021-04-03T15:15:19,376   changing mode of build/scripts-3.5/parse-genbank-flat-file.py from 644 to 755
2021-04-03T15:15:19,376   changing mode of build/scripts-3.5/position-summary.py from 644 to 755
2021-04-03T15:15:19,377   changing mode of build/scripts-3.5/print-blast-xml-for-derek.py from 644 to 755
2021-04-03T15:15:19,378   changing mode of build/scripts-3.5/print-blast-xml.py from 644 to 755
2021-04-03T15:15:19,379   changing mode of build/scripts-3.5/print-read-lengths.py from 644 to 755
2021-04-03T15:15:19,379   changing mode of build/scripts-3.5/proteins-to-pathogens.py from 644 to 755
2021-04-03T15:15:19,380   changing mode of build/scripts-3.5/proteins-to-pathogens-civ.py from 644 to 755
2021-04-03T15:15:19,381   changing mode of build/scripts-3.5/randomize-fasta.py from 644 to 755
2021-04-03T15:15:19,381   changing mode of build/scripts-3.5/read-blast-json.py from 644 to 755
2021-04-03T15:15:19,382   changing mode of build/scripts-3.5/read-blast-xml.py from 644 to 755
2021-04-03T15:15:19,383   changing mode of build/scripts-3.5/relabel-newick-tree.py from 644 to 755
2021-04-03T15:15:19,384   changing mode of build/scripts-3.5/run-bwa.py from 644 to 755
2021-04-03T15:15:19,384   changing mode of build/scripts-3.5/run-bowtie2.py from 644 to 755
2021-04-03T15:15:19,385   changing mode of build/scripts-3.5/sam-coverage.py from 644 to 755
2021-04-03T15:15:19,386   changing mode of build/scripts-3.5/sam-coverage-depth.py from 644 to 755
2021-04-03T15:15:19,386   changing mode of build/scripts-3.5/sam-to-fasta-alignment.py from 644 to 755
2021-04-03T15:15:19,387   changing mode of build/scripts-3.5/sam-reference-read-counts.py from 644 to 755
2021-04-03T15:15:19,388   changing mode of build/scripts-3.5/sam-references.py from 644 to 755
2021-04-03T15:15:19,389   changing mode of build/scripts-3.5/sff-to-fastq.py from 644 to 755
2021-04-03T15:15:19,389   changing mode of build/scripts-3.5/split-fasta-by-adaptors.py from 644 to 755
2021-04-03T15:15:19,390   changing mode of build/scripts-3.5/subset-protein-database.py from 644 to 755
2021-04-03T15:15:19,391   changing mode of build/scripts-3.5/summarize-fasta-bases.py from 644 to 755
2021-04-03T15:15:19,391   changing mode of build/scripts-3.5/summarize-reads.py from 644 to 755
2021-04-03T15:15:19,392   changing mode of build/scripts-3.5/translate.py from 644 to 755
2021-04-03T15:15:19,393   changing mode of build/scripts-3.5/trim-primers.py from 644 to 755
2021-04-03T15:15:19,394   changing mode of build/scripts-3.5/trim-reads.py from 644 to 755
2021-04-03T15:15:19,394   changing mode of build/scripts-3.5/write-htcondor-job-spec.py from 644 to 755
2021-04-03T15:15:19,402   installing to build/bdist.linux-armv7l/wheel
2021-04-03T15:15:19,403   running install
2021-04-03T15:15:19,405   running install_lib
2021-04-03T15:15:19,413   creating build/bdist.linux-armv7l
2021-04-03T15:15:19,414   creating build/bdist.linux-armv7l/wheel
2021-04-03T15:15:19,420   creating build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,422   copying build/lib/dark/intervals.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,428   copying build/lib/dark/sam.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,436   copying build/lib/dark/taxonomy.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,445   copying build/lib/dark/process.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,452   copying build/lib/dark/cigar.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,458   copying build/lib/dark/entrez.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,463   copying build/lib/dark/dna.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,473   creating build/bdist.linux-armv7l/wheel/dark/diamond
2021-04-03T15:15:19,476   copying build/lib/dark/diamond/sam.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-04-03T15:15:19,486   copying build/lib/dark/diamond/alignments.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-04-03T15:15:19,493   copying build/lib/dark/diamond/conversion.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-04-03T15:15:19,501   copying build/lib/dark/diamond/run.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-04-03T15:15:19,507   copying build/lib/dark/diamond/hsp.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-04-03T15:15:19,514   copying build/lib/dark/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-04-03T15:15:19,519   copying build/lib/dark/reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,531   copying build/lib/dark/summarize.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,537   copying build/lib/dark/aa.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,547   copying build/lib/dark/alignments.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,557   creating build/bdist.linux-armv7l/wheel/dark/civ
2021-04-03T15:15:19,560   copying build/lib/dark/civ/proteins.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-04-03T15:15:19,577   copying build/lib/dark/civ/html.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-04-03T15:15:19,584   copying build/lib/dark/civ/graphics.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-04-03T15:15:19,592   copying build/lib/dark/civ/__init__.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-04-03T15:15:19,597   copying build/lib/dark/proteins.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,609   creating build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,611   copying build/lib/dark/blast/alignments.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,619   copying build/lib/dark/blast/params.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,625   copying build/lib/dark/blast/conversion.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,632   copying build/lib/dark/blast/records.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,638   copying build/lib/dark/blast/hacks.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,643   copying build/lib/dark/blast/hsp.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,650   copying build/lib/dark/blast/score.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,656   copying build/lib/dark/blast/__init__.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-04-03T15:15:19,661   copying build/lib/dark/html.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,668   copying build/lib/dark/baseimage.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,674   copying build/lib/dark/fasta.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,682   copying build/lib/dark/ncbidb.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,688   copying build/lib/dark/consensus.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,694   copying build/lib/dark/utils.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,701   copying build/lib/dark/fasta_ss.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,708   copying build/lib/dark/analyze_reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,713   copying build/lib/dark/features.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,721   copying build/lib/dark/genomes.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,728   copying build/lib/dark/dimension.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,733   copying build/lib/dark/local_align.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,741   copying build/lib/dark/bowtie2.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,748   copying build/lib/dark/titles.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,756   copying build/lib/dark/database.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,762   copying build/lib/dark/colors.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,768   copying build/lib/dark/genbank.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,775   copying build/lib/dark/graphics.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,785   copying build/lib/dark/codonDistance.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,791   copying build/lib/dark/fastq.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,796   copying build/lib/dark/filter.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,804   copying build/lib/dark/hsp.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,811   copying build/lib/dark/mutations.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,819   copying build/lib/dark/sequence.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,825   copying build/lib/dark/ipynb.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,831   copying build/lib/dark/simplify.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,836   copying build/lib/dark/distance.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,842   copying build/lib/dark/orfs.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,848   copying build/lib/dark/score.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,854   copying build/lib/dark/errors.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,859   copying build/lib/dark/fpcache.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,865   copying build/lib/dark/btop.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,872   copying build/lib/dark/aligners.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,877   copying build/lib/dark/__init__.py -> build/bdist.linux-armv7l/wheel/dark
2021-04-03T15:15:19,882   running install_egg_info
2021-04-03T15:15:19,940   running egg_info
2021-04-03T15:15:19,942   writing requirements to dark_matter.egg-info/requires.txt
2021-04-03T15:15:19,944   writing dependency_links to dark_matter.egg-info/dependency_links.txt
2021-04-03T15:15:19,948   writing dark_matter.egg-info/PKG-INFO
2021-04-03T15:15:19,951   writing top-level names to dark_matter.egg-info/top_level.txt
2021-04-03T15:15:20,001   reading manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-04-03T15:15:20,041   writing manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-04-03T15:15:20,045   Copying dark_matter.egg-info to build/bdist.linux-armv7l/wheel/dark_matter-3.2.6-py3.5.egg-info
2021-04-03T15:15:20,070   running install_scripts
2021-04-03T15:15:20,214   creating build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data
2021-04-03T15:15:20,214   creating build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,217   copying build/scripts-3.5/compare-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,223   copying build/scripts-3.5/convert-diamond-to-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,229   copying build/scripts-3.5/bit-score-to-e-value.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,235   copying build/scripts-3.5/aa-to-dna.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,241   copying build/scripts-3.5/filter-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,247   copying build/scripts-3.5/run-bowtie2.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,254   copying build/scripts-3.5/sff-to-fastq.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,260   copying build/scripts-3.5/parse-genbank-flat-file.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,265   copying build/scripts-3.5/get-features.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,271   copying build/scripts-3.5/e-value-to-bit-score.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,277   copying build/scripts-3.5/genome-protein-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,284   copying build/scripts-3.5/fasta-base-indices.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,290   copying build/scripts-3.5/sam-to-fasta-alignment.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,296   copying build/scripts-3.5/fasta-variable-sites.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,303   copying build/scripts-3.5/summarize-fasta-bases.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,309   copying build/scripts-3.5/ncbi-fetch-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,314   copying build/scripts-3.5/sam-coverage.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,320   copying build/scripts-3.5/codon-distance.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,326   copying build/scripts-3.5/cat-json-blast-records.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,332   copying build/scripts-3.5/sam-coverage-depth.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,339   copying build/scripts-3.5/extract-ORFs.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,345   copying build/scripts-3.5/print-read-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,351   copying build/scripts-3.5/read-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,357   copying build/scripts-3.5/filter-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,370   copying build/scripts-3.5/filter-hits-to-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,385   copying build/scripts-3.5/randomize-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,410   copying build/scripts-3.5/describe-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,433   copying build/scripts-3.5/get-hosts.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,447   copying build/scripts-3.5/format-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,459   copying build/scripts-3.5/print-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,507   copying build/scripts-3.5/trim-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,513   copying build/scripts-3.5/find-hits.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,524   copying build/scripts-3.5/get-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,530   copying build/scripts-3.5/print-blast-xml-for-derek.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,542   copying build/scripts-3.5/graph-evalues.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,548   copying build/scripts-3.5/fasta-join.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,553   copying build/scripts-3.5/compare-consensuses.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,577   copying build/scripts-3.5/fasta-ids.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,588   copying build/scripts-3.5/sam-reference-read-counts.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,593   copying build/scripts-3.5/fasta-sort.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,599   copying build/scripts-3.5/fasta-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,604   copying build/scripts-3.5/pre-commit.sh -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,610   copying build/scripts-3.5/download-genbank.sh -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,616   copying build/scripts-3.5/make-fasta-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,622   copying build/scripts-3.5/read-blast-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,627   copying build/scripts-3.5/local-align.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,633   copying build/scripts-3.5/fasta-to-phylip.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
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2021-04-03T15:15:20,644   copying build/scripts-3.5/translate.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,649   copying build/scripts-3.5/subset-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,655   copying build/scripts-3.5/convert-diamond-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,661   copying build/scripts-3.5/aa-to-properties.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,666   copying build/scripts-3.5/filter-fasta-by-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,672   copying build/scripts-3.5/write-htcondor-job-spec.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,679   copying build/scripts-3.5/check-fasta-json-blast-consistency.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,685   copying build/scripts-3.5/create-newick-relabeling-output.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,690   copying build/scripts-3.5/proteins-to-pathogens-civ.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,697   copying build/scripts-3.5/fasta-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,701   copying build/scripts-3.5/filter-reads-alignments.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,706   copying build/scripts-3.5/make-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,711   copying build/scripts-3.5/dna-to-aa.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,716   copying build/scripts-3.5/get-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,722   copying build/scripts-3.5/aa-info.py -> build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts
2021-04-03T15:15:20,726   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/compare-sequences.py to 755
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2021-04-03T15:15:20,774   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/read-blast-json.py to 755
2021-04-03T15:15:20,774   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/local-align.py to 755
2021-04-03T15:15:20,775   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/fasta-to-phylip.py to 755
2021-04-03T15:15:20,776   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/relabel-newick-tree.py to 755
2021-04-03T15:15:20,776   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/translate.py to 755
2021-04-03T15:15:20,777   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/subset-protein-database.py to 755
2021-04-03T15:15:20,778   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/convert-diamond-to-json.py to 755
2021-04-03T15:15:20,778   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/aa-to-properties.py to 755
2021-04-03T15:15:20,779   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/filter-fasta-by-taxonomy.py to 755
2021-04-03T15:15:20,780   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/write-htcondor-job-spec.py to 755
2021-04-03T15:15:20,780   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/check-fasta-json-blast-consistency.py to 755
2021-04-03T15:15:20,781   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/create-newick-relabeling-output.py to 755
2021-04-03T15:15:20,782   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/proteins-to-pathogens-civ.py to 755
2021-04-03T15:15:20,782   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/fasta-lengths.py to 755
2021-04-03T15:15:20,783   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/filter-reads-alignments.py to 755
2021-04-03T15:15:20,784   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/make-protein-database.py to 755
2021-04-03T15:15:20,784   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/dna-to-aa.py to 755
2021-04-03T15:15:20,785   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/get-taxonomy.py to 755
2021-04-03T15:15:20,786   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.data/scripts/aa-info.py to 755
2021-04-03T15:15:20,877   creating build/bdist.linux-armv7l/wheel/dark_matter-3.2.6.dist-info/WHEEL
2021-04-03T15:15:21,877   Building wheel for dark-matter (setup.py): finished with status 'done'
2021-04-03T15:15:21,887   Created wheel for dark-matter: filename=dark_matter-3.2.6-py3-none-any.whl size=316703 sha256=60e1f9b579fe461f73f01b4ec5dd0bf6e6f6d1de8f5c70cf9cea0798f0fc326d
2021-04-03T15:15:21,888   Stored in directory: /tmp/pip-ephem-wheel-cache-m0scf9b0/wheels/8f/39/77/d2c95a966e06d83bca00065e66c666bda1671e0cec3720a598
2021-04-03T15:15:21,920 Successfully built dark-matter
2021-04-03T15:15:21,979 Removed build tracker: '/tmp/pip-req-tracker-bj2t3s8q'