2021-04-06T17:43:18,802 Created temporary directory: /tmp/pip-ephem-wheel-cache-40oayqrw
2021-04-06T17:43:18,804 Created temporary directory: /tmp/pip-req-tracker-cmvdqplf
2021-04-06T17:43:18,805 Initialized build tracking at /tmp/pip-req-tracker-cmvdqplf
2021-04-06T17:43:18,805 Created build tracker: /tmp/pip-req-tracker-cmvdqplf
2021-04-06T17:43:18,805 Entered build tracker: /tmp/pip-req-tracker-cmvdqplf
2021-04-06T17:43:18,806 Created temporary directory: /tmp/pip-wheel-eh_oc51o
2021-04-06T17:43:18,841 1 location(s) to search for versions of cytohmm:
2021-04-06T17:43:18,841 * https://pypi.org/simple/cytohmm/
2021-04-06T17:43:18,841 Fetching project page and analyzing links: https://pypi.org/simple/cytohmm/
2021-04-06T17:43:18,842 Getting page https://pypi.org/simple/cytohmm/
2021-04-06T17:43:18,843 Found index url https://pypi.org/simple
2021-04-06T17:43:18,938   Found link https://files.pythonhosted.org/packages/39/b7/66f96e238de940ee4fe5d86048689df8c105f56b57d5cb052b5f4a255328/cytohmm-0.0.1.tar.gz#sha256=f51f92e9d34fa64bf27055977cb93167e23ac6113a3816977a724d5bfa2c750e (from https://pypi.org/simple/cytohmm/), version: 0.0.1
2021-04-06T17:43:18,939   Found link https://files.pythonhosted.org/packages/0f/1d/f92e919a35149774961020a922374bf7e0c245104aa9816c1896ec621dfe/cytohmm-0.0.2.tar.gz#sha256=8e02e8e8e35cdf8578837d12cfee9399218b7e449f407c1e66532420f928dd32 (from https://pypi.org/simple/cytohmm/), version: 0.0.2
2021-04-06T17:43:18,939   Found link https://files.pythonhosted.org/packages/54/56/2a327392bbe1450b4bfb07a2ba62ea7f49ce383a76aae62fa9c0e546e128/cytohmm-0.0.3.tar.gz#sha256=89c6fc98532f317233c0a43390717736211d728d1a6c2b6320b8f38d14047449 (from https://pypi.org/simple/cytohmm/), version: 0.0.3
2021-04-06T17:43:18,940   Found link https://files.pythonhosted.org/packages/7e/7e/77b89a6a5bde0a85c69c82e16bc4bb1629c09a1b831048c99d0d71522e43/cytohmm-0.1.0.tar.gz#sha256=0c00df6c5ad19913469470dec4848206230cc8ab29f3ef67b70e122711bb2253 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.0
2021-04-06T17:43:18,940   Found link https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 (from https://pypi.org/simple/cytohmm/) (requires-python:<4,>=3.6), version: 0.1.1
2021-04-06T17:43:18,954 Given no hashes to check 1 links for project 'cytohmm': discarding no candidates
2021-04-06T17:43:18,969 Collecting cytohmm==0.1.1
2021-04-06T17:43:18,971   Created temporary directory: /tmp/pip-unpack-3fdl2cu7
2021-04-06T17:43:19,220   Downloading cytohmm-0.1.1.tar.gz (220 kB)
2021-04-06T17:43:19,358   Added cytohmm==0.1.1 from https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 to build tracker '/tmp/pip-req-tracker-cmvdqplf'
2021-04-06T17:43:19,359     Running setup.py (path:/tmp/pip-wheel-eh_oc51o/cytohmm_f0736462627840b3861e3750d552931d/setup.py) egg_info for package cytohmm
2021-04-06T17:43:19,359     Created temporary directory: /tmp/pip-pip-egg-info-hdsz605t
2021-04-06T17:43:19,360     Running command python setup.py egg_info
2021-04-06T17:43:21,458     running egg_info
2021-04-06T17:43:21,461     creating /tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info
2021-04-06T17:43:21,462     writing /tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info/PKG-INFO
2021-04-06T17:43:21,465     writing dependency_links to /tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info/dependency_links.txt
2021-04-06T17:43:21,467     writing requirements to /tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info/requires.txt
2021-04-06T17:43:21,469     writing top-level names to /tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info/top_level.txt
2021-04-06T17:43:21,471     writing manifest file '/tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info/SOURCES.txt'
2021-04-06T17:43:21,625     reading manifest file '/tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info/SOURCES.txt'
2021-04-06T17:43:21,627     reading manifest template 'MANIFEST.in'
2021-04-06T17:43:21,642     writing manifest file '/tmp/pip-pip-egg-info-hdsz605t/cytohmm.egg-info/SOURCES.txt'
2021-04-06T17:43:21,765   Source in /tmp/pip-wheel-eh_oc51o/cytohmm_f0736462627840b3861e3750d552931d has version 0.1.1, which satisfies requirement cytohmm==0.1.1 from https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6
2021-04-06T17:43:21,766   Removed cytohmm==0.1.1 from https://files.pythonhosted.org/packages/b2/77/9364dab7843667e4689977bd019ffcb649e066e0684c480b26cc757ea091/cytohmm-0.1.1.tar.gz#sha256=c47c234655a0478502bb52e879fecc905c04d834bc3b40523024a134f9073cf6 from build tracker '/tmp/pip-req-tracker-cmvdqplf'
2021-04-06T17:43:21,774 Created temporary directory: /tmp/pip-unpack-ekcb0uy6
2021-04-06T17:43:21,774 Building wheels for collected packages: cytohmm
2021-04-06T17:43:21,779   Created temporary directory: /tmp/pip-wheel-dlifr8ts
2021-04-06T17:43:21,780   Building wheel for cytohmm (setup.py): started
2021-04-06T17:43:21,780   Destination directory: /tmp/pip-wheel-dlifr8ts
2021-04-06T17:43:21,780   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-eh_oc51o/cytohmm_f0736462627840b3861e3750d552931d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-eh_oc51o/cytohmm_f0736462627840b3861e3750d552931d/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-dlifr8ts
2021-04-06T17:43:23,776   running bdist_wheel
2021-04-06T17:43:23,781   running build
2021-04-06T17:43:23,782   running build_py
2021-04-06T17:43:23,907   creating build
2021-04-06T17:43:23,908   creating build/lib.linux-armv7l-3.7
2021-04-06T17:43:23,909   creating build/lib.linux-armv7l-3.7/cytohmm
2021-04-06T17:43:23,911   copying src/cytohmm/__init__.py -> build/lib.linux-armv7l-3.7/cytohmm
2021-04-06T17:43:23,913   copying src/cytohmm/sequence_segmenter.py -> build/lib.linux-armv7l-3.7/cytohmm
2021-04-06T17:43:23,916   running build_ext
2021-04-06T17:43:23,922   building 'cytohmm.markov_chain' extension
2021-04-06T17:43:23,923   creating build/temp.linux-armv7l-3.7
2021-04-06T17:43:23,924   creating build/temp.linux-armv7l-3.7/src
2021-04-06T17:43:23,925   creating build/temp.linux-armv7l-3.7/src/cytohmm
2021-04-06T17:43:23,927   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/cytohmm/markov_chain.c -o build/temp.linux-armv7l-3.7/src/cytohmm/markov_chain.o
2021-04-06T17:43:24,313   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-04-06T17:43:24,313                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-04-06T17:43:24,313                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-04-06T17:43:24,313                    from src/cytohmm/markov_chain.c:632:
2021-04-06T17:43:24,314   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-04-06T17:43:24,314    #warning "Using deprecated NumPy API, disable it with " \
2021-04-06T17:43:24,314     ^~~~~~~
2021-04-06T17:43:34,639   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/cytohmm/markov_chain.o -o build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so
2021-04-06T17:43:34,807   building 'cytohmm.likelihood' extension
2021-04-06T17:43:34,808   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c src/cytohmm/likelihood.c -o build/temp.linux-armv7l-3.7/src/cytohmm/likelihood.o
2021-04-06T17:43:35,168   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-04-06T17:43:35,168                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-04-06T17:43:35,168                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-04-06T17:43:35,169                    from src/cytohmm/likelihood.c:632:
2021-04-06T17:43:35,169   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-04-06T17:43:35,169    #warning "Using deprecated NumPy API, disable it with " \
2021-04-06T17:43:35,169     ^~~~~~~
2021-04-06T17:43:42,372   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/src/cytohmm/likelihood.o -o build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so
2021-04-06T17:43:42,579   installing to build/bdist.linux-armv7l/wheel
2021-04-06T17:43:42,580   running install
2021-04-06T17:43:42,581   running install_lib
2021-04-06T17:43:42,588   creating build/bdist.linux-armv7l
2021-04-06T17:43:42,588   creating build/bdist.linux-armv7l/wheel
2021-04-06T17:43:42,591   creating build/bdist.linux-armv7l/wheel/cytohmm
2021-04-06T17:43:42,592   copying build/lib.linux-armv7l-3.7/cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-04-06T17:43:42,610   copying build/lib.linux-armv7l-3.7/cytohmm/__init__.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-04-06T17:43:42,612   copying build/lib.linux-armv7l-3.7/cytohmm/sequence_segmenter.py -> build/bdist.linux-armv7l/wheel/cytohmm
2021-04-06T17:43:42,615   copying build/lib.linux-armv7l-3.7/cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/cytohmm
2021-04-06T17:43:42,631   running install_egg_info
2021-04-06T17:43:42,658   running egg_info
2021-04-06T17:43:42,658   writing cytohmm.egg-info/PKG-INFO
2021-04-06T17:43:42,661   writing dependency_links to cytohmm.egg-info/dependency_links.txt
2021-04-06T17:43:42,663   writing requirements to cytohmm.egg-info/requires.txt
2021-04-06T17:43:42,664   writing top-level names to cytohmm.egg-info/top_level.txt
2021-04-06T17:43:42,670   reading manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-04-06T17:43:42,673   reading manifest template 'MANIFEST.in'
2021-04-06T17:43:42,685   writing manifest file 'cytohmm.egg-info/SOURCES.txt'
2021-04-06T17:43:42,687   Copying cytohmm.egg-info to build/bdist.linux-armv7l/wheel/cytohmm-0.1.1-py3.7.egg-info
2021-04-06T17:43:42,702   running install_scripts
2021-04-06T17:43:42,751   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-04-06T17:43:42,758   creating build/bdist.linux-armv7l/wheel/cytohmm-0.1.1.dist-info/WHEEL
2021-04-06T17:43:42,762   creating '/tmp/pip-wheel-dlifr8ts/cytohmm-0.1.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-04-06T17:43:42,765   adding 'cytohmm/__init__.py'
2021-04-06T17:43:42,847   adding 'cytohmm/likelihood.cpython-37m-arm-linux-gnueabihf.so'
2021-04-06T17:43:42,954   adding 'cytohmm/markov_chain.cpython-37m-arm-linux-gnueabihf.so'
2021-04-06T17:43:42,960   adding 'cytohmm/sequence_segmenter.py'
2021-04-06T17:43:42,963   adding 'cytohmm-0.1.1.dist-info/LICENSE'
2021-04-06T17:43:42,964   adding 'cytohmm-0.1.1.dist-info/METADATA'
2021-04-06T17:43:42,965   adding 'cytohmm-0.1.1.dist-info/WHEEL'
2021-04-06T17:43:42,967   adding 'cytohmm-0.1.1.dist-info/top_level.txt'
2021-04-06T17:43:42,967   adding 'cytohmm-0.1.1.dist-info/RECORD'
2021-04-06T17:43:42,976   removing build/bdist.linux-armv7l/wheel
2021-04-06T17:43:43,124   Building wheel for cytohmm (setup.py): finished with status 'done'
2021-04-06T17:43:43,130   Created wheel for cytohmm: filename=cytohmm-0.1.1-cp37-cp37m-linux_armv7l.whl size=345414 sha256=f48920acba141641edbc15df39d9f8c804ec7c4e8db194e694cec19329cdd6f5
2021-04-06T17:43:43,130   Stored in directory: /tmp/pip-ephem-wheel-cache-40oayqrw/wheels/ec/f1/a7/e3216e38b2d0b489b175d16d635bb1520fc7ed26e4cd585707
2021-04-06T17:43:43,141 Successfully built cytohmm
2021-04-06T17:43:43,209 Removed build tracker: '/tmp/pip-req-tracker-cmvdqplf'