2021-04-10T01:10:56,070 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-04-10T01:10:56,894 Created temporary directory: /tmp/pip-ephem-wheel-cache-e9nd2wid
2021-04-10T01:10:56,899 Created temporary directory: /tmp/pip-req-tracker-jv8dxmxd
2021-04-10T01:10:56,900 Initialized build tracking at /tmp/pip-req-tracker-jv8dxmxd
2021-04-10T01:10:56,901 Created build tracker: /tmp/pip-req-tracker-jv8dxmxd
2021-04-10T01:10:56,901 Entered build tracker: /tmp/pip-req-tracker-jv8dxmxd
2021-04-10T01:10:56,902 Created temporary directory: /tmp/pip-wheel-4p0xfd9y
2021-04-10T01:10:56,976 1 location(s) to search for versions of mgatk:
2021-04-10T01:10:56,976 * https://pypi.org/simple/mgatk/
2021-04-10T01:10:56,976 Fetching project page and analyzing links: https://pypi.org/simple/mgatk/
2021-04-10T01:10:56,979 Getting page https://pypi.org/simple/mgatk/
2021-04-10T01:10:56,983 Found index url https://pypi.org/simple
2021-04-10T01:10:57,342   Found link https://files.pythonhosted.org/packages/8f/0c/47da433403828d2e53de436d7689af32d8ee5130dc1c748ce0175d0f2eb1/mgatk-0.0.1.tar.gz#sha256=f0a66229c6057d0cc66db65b33141cd22a3ebc0a4ede501e4887014b5a56643b (from https://pypi.org/simple/mgatk/), version: 0.0.1
2021-04-10T01:10:57,343   Found link https://files.pythonhosted.org/packages/f7/7f/f09842055b19e670fbc309415123b423d30cc0fd1a8c430785bd1754827f/mgatk-0.1.0.tar.gz#sha256=bcfea43a3fb2d22b7c5cbecf59fd3989ef03250f87378b33e889b4054e275166 (from https://pypi.org/simple/mgatk/), version: 0.1.0
2021-04-10T01:10:57,344   Found link https://files.pythonhosted.org/packages/b7/8e/ac9ab509199f852d88097608e3fb60fc85232c87a36a062a041043ea869d/mgatk-0.2.5.tar.gz#sha256=b16329f84786ef87490379db121816b103fe5339ed90fb395e0a9c4ef5028d6e (from https://pypi.org/simple/mgatk/), version: 0.2.5
2021-04-10T01:10:57,345   Found link https://files.pythonhosted.org/packages/74/28/da183d0b56f401dec7f3bded24c50a02396e56c4f995fd50a3cf21c4381d/mgatk-0.5.0.tar.gz#sha256=61ee4d3c18cf696ecfbea6ab5dd9bfebf9791c368a04cfc2d1afcdfe16a6d3ca (from https://pypi.org/simple/mgatk/), version: 0.5.0
2021-04-10T01:10:57,346   Found link https://files.pythonhosted.org/packages/96/e8/e35c039eac8d418ca9213b1db69c4176b59783ca43638a75e824b475197d/mgatk-0.5.1.tar.gz#sha256=518ef6a1d25d9f889a306514eaf1ade02146fce28a43866a60dc6f1dad81b54c (from https://pypi.org/simple/mgatk/), version: 0.5.1
2021-04-10T01:10:57,347   Found link https://files.pythonhosted.org/packages/b6/16/d11afe05a803f23995d04af8fd832473fa1d21f73f242340f6086eb97183/mgatk-0.5.3.tar.gz#sha256=d9b78751af0fe8c31d22508a24ef061d7478c8a2c6283eded971f8802f060f79 (from https://pypi.org/simple/mgatk/), version: 0.5.3
2021-04-10T01:10:57,348   Found link https://files.pythonhosted.org/packages/be/5f/896adc0419fad47b3434866dd68deb7b93a1328916be0eb1f0827393633e/mgatk-0.5.5.tar.gz#sha256=bcc0470b4d01e5cd5d5e67f87720101fc4db889a0c5a4ef35c7d7224989d60a7 (from https://pypi.org/simple/mgatk/), version: 0.5.5
2021-04-10T01:10:57,349   Found link https://files.pythonhosted.org/packages/d0/3d/4a67edbf2648ab25ee6b2361e454638ecd5de6753a0c5f3de21975a7c5bd/mgatk-0.5.6.tar.gz#sha256=9a5f51c87b26221644ab12b675f4334efc1d3339b32065cd5c5ac2b512350ee6 (from https://pypi.org/simple/mgatk/), version: 0.5.6
2021-04-10T01:10:57,349   Found link https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df (from https://pypi.org/simple/mgatk/), version: 0.5.7
2021-04-10T01:10:57,350   Found link https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67 (from https://pypi.org/simple/mgatk/), version: 0.5.8
2021-04-10T01:10:57,351   Found link https://files.pythonhosted.org/packages/f1/06/47716f2b5fec77a4a48fb5f3722ec27da0ce98d2219cb2eceb113fc72d8b/mgatk-0.5.9.tar.gz#sha256=6c3ba9b8c2b0edaea34e31f4a0b1a88c282a81e5d3823415f1a7c478395233f4 (from https://pypi.org/simple/mgatk/), version: 0.5.9
2021-04-10T01:10:57,352   Found link https://files.pythonhosted.org/packages/e6/73/33c2bdc77eead0a8d9b81a38adb54b75f804b189adabad25795edb5bdc60/mgatk-0.6.0.tar.gz#sha256=95ac75a5f3994c85789f4bf561f21f19f6f2229534a2a331fdddfcca4b4c5220 (from https://pypi.org/simple/mgatk/), version: 0.6.0
2021-04-10T01:10:57,386 Given no hashes to check 1 links for project 'mgatk': discarding no candidates
2021-04-10T01:10:57,420 Collecting mgatk==0.6.0
2021-04-10T01:10:57,423   Created temporary directory: /tmp/pip-unpack-80wgz9gg
2021-04-10T01:11:00,976   Downloading mgatk-0.6.0.tar.gz (14.3 MB)
2021-04-10T01:11:06,994   Added mgatk==0.6.0 from https://files.pythonhosted.org/packages/e6/73/33c2bdc77eead0a8d9b81a38adb54b75f804b189adabad25795edb5bdc60/mgatk-0.6.0.tar.gz#sha256=95ac75a5f3994c85789f4bf561f21f19f6f2229534a2a331fdddfcca4b4c5220 to build tracker '/tmp/pip-req-tracker-jv8dxmxd'
2021-04-10T01:11:06,998     Running setup.py (path:/tmp/pip-wheel-4p0xfd9y/mgatk_199de4b21e834efb88cf17a7fdc7bd6c/setup.py) egg_info for package mgatk
2021-04-10T01:11:07,000     Created temporary directory: /tmp/pip-pip-egg-info-18oqfi93
2021-04-10T01:11:07,001     Running command python setup.py egg_info
2021-04-10T01:11:09,249     running egg_info
2021-04-10T01:11:09,256     creating /tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info
2021-04-10T01:11:09,260     writing requirements to /tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/requires.txt
2021-04-10T01:11:09,262     writing dependency_links to /tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/dependency_links.txt
2021-04-10T01:11:09,266     writing entry points to /tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/entry_points.txt
2021-04-10T01:11:09,268     writing top-level names to /tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/top_level.txt
2021-04-10T01:11:09,270     writing /tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/PKG-INFO
2021-04-10T01:11:09,279     writing manifest file '/tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/SOURCES.txt'
2021-04-10T01:11:09,640     reading manifest file '/tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/SOURCES.txt'
2021-04-10T01:11:09,644     reading manifest template 'MANIFEST.in'
2021-04-10T01:11:09,646     no previously-included directories found matching 'mgatk.egg-info/'
2021-04-10T01:11:09,647     no previously-included directories found matching 'tests/'
2021-04-10T01:11:09,648     no previously-included directories found matching '*.DS_Store'
2021-04-10T01:11:09,729     writing manifest file '/tmp/pip-pip-egg-info-18oqfi93/mgatk.egg-info/SOURCES.txt'
2021-04-10T01:11:09,864   Source in /tmp/pip-wheel-4p0xfd9y/mgatk_199de4b21e834efb88cf17a7fdc7bd6c has version 0.6.0, which satisfies requirement mgatk==0.6.0 from https://files.pythonhosted.org/packages/e6/73/33c2bdc77eead0a8d9b81a38adb54b75f804b189adabad25795edb5bdc60/mgatk-0.6.0.tar.gz#sha256=95ac75a5f3994c85789f4bf561f21f19f6f2229534a2a331fdddfcca4b4c5220
2021-04-10T01:11:09,866   Removed mgatk==0.6.0 from https://files.pythonhosted.org/packages/e6/73/33c2bdc77eead0a8d9b81a38adb54b75f804b189adabad25795edb5bdc60/mgatk-0.6.0.tar.gz#sha256=95ac75a5f3994c85789f4bf561f21f19f6f2229534a2a331fdddfcca4b4c5220 from build tracker '/tmp/pip-req-tracker-jv8dxmxd'
2021-04-10T01:11:09,874 Created temporary directory: /tmp/pip-unpack-gbiykme0
2021-04-10T01:11:09,875 Building wheels for collected packages: mgatk
2021-04-10T01:11:09,884   Created temporary directory: /tmp/pip-wheel-8ingg60j
2021-04-10T01:11:09,885   Building wheel for mgatk (setup.py): started
2021-04-10T01:11:09,886   Destination directory: /tmp/pip-wheel-8ingg60j
2021-04-10T01:11:09,886   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4p0xfd9y/mgatk_199de4b21e834efb88cf17a7fdc7bd6c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4p0xfd9y/mgatk_199de4b21e834efb88cf17a7fdc7bd6c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8ingg60j
2021-04-10T01:11:12,115   running bdist_wheel
2021-04-10T01:11:12,133   running build
2021-04-10T01:11:12,134   running build_py
2021-04-10T01:11:12,484   creating build
2021-04-10T01:11:12,484   creating build/lib
2021-04-10T01:11:12,486   creating build/lib/mgatk
2021-04-10T01:11:12,489   copying mgatk/mgatkHelp.py -> build/lib/mgatk
2021-04-10T01:11:12,495   copying mgatk/__init__.py -> build/lib/mgatk
2021-04-10T01:11:12,499   copying mgatk/cli.py -> build/lib/mgatk
2021-04-10T01:11:12,505   running egg_info
2021-04-10T01:11:12,539   writing mgatk.egg-info/PKG-INFO
2021-04-10T01:11:12,545   writing dependency_links to mgatk.egg-info/dependency_links.txt
2021-04-10T01:11:12,547   writing requirements to mgatk.egg-info/requires.txt
2021-04-10T01:11:12,549   writing top-level names to mgatk.egg-info/top_level.txt
2021-04-10T01:11:12,551   writing entry points to mgatk.egg-info/entry_points.txt
2021-04-10T01:11:12,561   reading manifest file 'mgatk.egg-info/SOURCES.txt'
2021-04-10T01:11:12,568   reading manifest template 'MANIFEST.in'
2021-04-10T01:11:12,572   no previously-included directories found matching 'tests/'
2021-04-10T01:11:12,574   no previously-included directories found matching '*.DS_Store'
2021-04-10T01:11:12,664   writing manifest file 'mgatk.egg-info/SOURCES.txt'
2021-04-10T01:11:12,680   copying mgatk/.DS_Store -> build/lib/mgatk
2021-04-10T01:11:12,686   copying mgatk/devnotes.md -> build/lib/mgatk
2021-04-10T01:11:12,692   creating build/lib/mgatk/__pycache__
2021-04-10T01:11:12,694   copying mgatk/__pycache__/__init__.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-04-10T01:11:12,699   copying mgatk/__pycache__/__init__.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-04-10T01:11:12,705   copying mgatk/__pycache__/cli.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-04-10T01:11:12,714   copying mgatk/__pycache__/cli.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-04-10T01:11:12,723   copying mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-04-10T01:11:12,732   copying mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-04-10T01:11:12,741   creating build/lib/mgatk/bin
2021-04-10T01:11:12,744   copying mgatk/bin/.DS_Store -> build/lib/mgatk/bin
2021-04-10T01:11:12,754   copying mgatk/bin/picard.jar -> build/lib/mgatk/bin
2021-04-10T01:11:14,180   creating build/lib/mgatk/bin/R
2021-04-10T01:11:14,182   copying mgatk/bin/R/toRDS.R -> build/lib/mgatk/bin/R
2021-04-10T01:11:14,189   creating build/lib/mgatk/bin/anno
2021-04-10T01:11:14,191   copying mgatk/bin/anno/.DS_Store -> build/lib/mgatk/bin/anno
2021-04-10T01:11:14,199   creating build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,201   copying mgatk/bin/anno/fasta/GRCh37.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,211   copying mgatk/bin/anno/fasta/GRCh38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,220   copying mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,227   copying mgatk/bin/anno/fasta/GRCm38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,237   copying mgatk/bin/anno/fasta/GRCz10.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,246   copying mgatk/bin/anno/fasta/NC_012920.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,256   copying mgatk/bin/anno/fasta/hg19.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,265   copying mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,274   copying mgatk/bin/anno/fasta/hg38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,283   copying mgatk/bin/anno/fasta/mm10.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,292   copying mgatk/bin/anno/fasta/mm9.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,301   copying mgatk/bin/anno/fasta/rCRS.fasta -> build/lib/mgatk/bin/anno/fasta
2021-04-10T01:11:14,311   creating build/lib/mgatk/bin/python
2021-04-10T01:11:14,313   copying mgatk/bin/python/chunk_barcoded_bam.py -> build/lib/mgatk/bin/python
2021-04-10T01:11:14,321   copying mgatk/bin/python/filterClipBam.py -> build/lib/mgatk/bin/python
2021-04-10T01:11:14,328   copying mgatk/bin/python/find_barcodes.py -> build/lib/mgatk/bin/python
2021-04-10T01:11:14,335   copying mgatk/bin/python/oneSample.py -> build/lib/mgatk/bin/python
2021-04-10T01:11:14,342   copying mgatk/bin/python/split_barcoded_bam.py -> build/lib/mgatk/bin/python
2021-04-10T01:11:14,349   copying mgatk/bin/python/sumstatsBP.py -> build/lib/mgatk/bin/python
2021-04-10T01:11:14,357   copying mgatk/bin/python/sumstatsBPtenx.py -> build/lib/mgatk/bin/python
2021-04-10T01:11:14,364   creating build/lib/mgatk/bin/snake
2021-04-10T01:11:14,366   copying mgatk/bin/snake/Snakefile.Gather -> build/lib/mgatk/bin/snake
2021-04-10T01:11:14,374   copying mgatk/bin/snake/Snakefile.Scatter -> build/lib/mgatk/bin/snake
2021-04-10T01:11:14,381   copying mgatk/bin/snake/Snakefile.tenx -> build/lib/mgatk/bin/snake
2021-04-10T01:11:14,389   creating build/lib/mgatk/del
2021-04-10T01:11:14,391   copying mgatk/del/.DS_Store -> build/lib/mgatk/del
2021-04-10T01:11:14,400   copying mgatk/del/clidel.py -> build/lib/mgatk/del
2021-04-10T01:11:14,408   copying mgatk/del/clifind.py -> build/lib/mgatk/del
2021-04-10T01:11:14,416   creating build/lib/mgatk/del/__pycache__
2021-04-10T01:11:14,420   copying mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2021-04-10T01:11:14,428   copying mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2021-04-10T01:11:14,435   copying mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2021-04-10T01:11:14,442   creating build/lib/mgatk/del/bulk_del
2021-04-10T01:11:14,445   copying mgatk/del/bulk_del/.DS_Store -> build/lib/mgatk/del/bulk_del
2021-04-10T01:11:14,454   copying mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/lib/mgatk/del/bulk_del
2021-04-10T01:11:14,463   creating build/lib/mgatk/del/singles_del
2021-04-10T01:11:14,467   copying mgatk/del/singles_del/01_process_cell_reads.py -> build/lib/mgatk/del/singles_del
2021-04-10T01:11:14,473   copying mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/lib/mgatk/del/singles_del
2021-04-10T01:11:14,479   copying mgatk/del/singles_del/Snakefile.delSingles -> build/lib/mgatk/del/singles_del
2021-04-10T01:11:14,493   installing to build/bdist.linux-armv7l/wheel
2021-04-10T01:11:14,494   running install
2021-04-10T01:11:14,497   running install_lib
2021-04-10T01:11:14,506   creating build/bdist.linux-armv7l
2021-04-10T01:11:14,507   creating build/bdist.linux-armv7l/wheel
2021-04-10T01:11:14,512   creating build/bdist.linux-armv7l/wheel/mgatk
2021-04-10T01:11:14,514   copying build/lib/mgatk/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk
2021-04-10T01:11:14,521   creating build/bdist.linux-armv7l/wheel/mgatk/bin
2021-04-10T01:11:14,523   copying build/lib/mgatk/bin/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin
2021-04-10T01:11:14,531   creating build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-04-10T01:11:14,533   copying build/lib/mgatk/bin/snake/Snakefile.Scatter -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-04-10T01:11:14,539   copying build/lib/mgatk/bin/snake/Snakefile.tenx -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-04-10T01:11:14,546   copying build/lib/mgatk/bin/snake/Snakefile.Gather -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-04-10T01:11:14,553   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2021-04-10T01:11:14,555   copying build/lib/mgatk/bin/anno/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2021-04-10T01:11:14,565   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,568   copying build/lib/mgatk/bin/anno/fasta/NC_012920.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,576   copying build/lib/mgatk/bin/anno/fasta/mm9.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,584   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,591   copying build/lib/mgatk/bin/anno/fasta/rCRS.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,598   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,606   copying build/lib/mgatk/bin/anno/fasta/GRCz10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,613   copying build/lib/mgatk/bin/anno/fasta/GRCh37.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,621   copying build/lib/mgatk/bin/anno/fasta/mm10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,630   copying build/lib/mgatk/bin/anno/fasta/hg19.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,637   copying build/lib/mgatk/bin/anno/fasta/GRCm38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,645   copying build/lib/mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,653   copying build/lib/mgatk/bin/anno/fasta/hg38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-04-10T01:11:14,662   creating build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,665   copying build/lib/mgatk/bin/python/sumstatsBPtenx.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,671   copying build/lib/mgatk/bin/python/sumstatsBP.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,679   copying build/lib/mgatk/bin/python/oneSample.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,685   copying build/lib/mgatk/bin/python/chunk_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,691   copying build/lib/mgatk/bin/python/find_barcodes.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,696   copying build/lib/mgatk/bin/python/split_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,702   copying build/lib/mgatk/bin/python/filterClipBam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-04-10T01:11:14,710   creating build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-04-10T01:11:14,712   copying build/lib/mgatk/bin/R/toRDS.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-04-10T01:11:14,720   copying build/lib/mgatk/bin/picard.jar -> build/bdist.linux-armv7l/wheel/mgatk/bin
2021-04-10T01:11:16,149   copying build/lib/mgatk/mgatkHelp.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-04-10T01:11:16,155   copying build/lib/mgatk/__init__.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-04-10T01:11:16,160   copying build/lib/mgatk/devnotes.md -> build/bdist.linux-armv7l/wheel/mgatk
2021-04-10T01:11:16,167   creating build/bdist.linux-armv7l/wheel/mgatk/del
2021-04-10T01:11:16,171   copying build/lib/mgatk/del/clidel.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-04-10T01:11:16,180   copying build/lib/mgatk/del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-04-10T01:11:16,188   copying build/lib/mgatk/del/clifind.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-04-10T01:11:16,197   creating build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-04-10T01:11:16,201   copying build/lib/mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-04-10T01:11:16,209   copying build/lib/mgatk/del/singles_del/01_process_cell_reads.py -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-04-10T01:11:16,215   copying build/lib/mgatk/del/singles_del/Snakefile.delSingles -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-04-10T01:11:16,222   creating build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-04-10T01:11:16,225   copying build/lib/mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-04-10T01:11:16,231   copying build/lib/mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-04-10T01:11:16,237   copying build/lib/mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-04-10T01:11:16,246   creating build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-04-10T01:11:16,249   copying build/lib/mgatk/del/bulk_del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-04-10T01:11:16,255   copying build/lib/mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-04-10T01:11:16,261   creating build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-04-10T01:11:16,263   copying build/lib/mgatk/__pycache__/cli.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-04-10T01:11:16,271   copying build/lib/mgatk/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-04-10T01:11:16,277   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-04-10T01:11:16,284   copying build/lib/mgatk/__pycache__/__init__.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-04-10T01:11:16,289   copying build/lib/mgatk/__pycache__/cli.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-04-10T01:11:16,296   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-04-10T01:11:16,301   copying build/lib/mgatk/cli.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-04-10T01:11:16,307   running install_egg_info
2021-04-10T01:11:16,324   Copying mgatk.egg-info to build/bdist.linux-armv7l/wheel/mgatk-0.6.0-py3.5.egg-info
2021-04-10T01:11:16,365   running install_scripts
2021-04-10T01:11:16,579   creating build/bdist.linux-armv7l/wheel/mgatk-0.6.0.dist-info/WHEEL
2021-04-10T01:11:21,501   Building wheel for mgatk (setup.py): finished with status 'done'
2021-04-10T01:11:21,738   Created wheel for mgatk: filename=mgatk-0.6.0-py2.py3-none-any.whl size=14337849 sha256=36135d81a973357f7125fb1ff898ef3590364d14ee64ee4f9c6a25b1340d78ca
2021-04-10T01:11:21,739   Stored in directory: /tmp/pip-ephem-wheel-cache-e9nd2wid/wheels/04/81/39/247882876e333f00a377e982725bb61a3b5c4bea2e51fc14f3
2021-04-10T01:11:21,767 Successfully built mgatk
2021-04-10T01:11:24,247 Removed build tracker: '/tmp/pip-req-tracker-jv8dxmxd'