2021-04-18T21:38:05,731 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-04-18T21:38:06,452 Created temporary directory: /tmp/pip-ephem-wheel-cache-tgjhlr9e
2021-04-18T21:38:06,456 Created temporary directory: /tmp/pip-req-tracker-o_68quui
2021-04-18T21:38:06,457 Initialized build tracking at /tmp/pip-req-tracker-o_68quui
2021-04-18T21:38:06,458 Created build tracker: /tmp/pip-req-tracker-o_68quui
2021-04-18T21:38:06,458 Entered build tracker: /tmp/pip-req-tracker-o_68quui
2021-04-18T21:38:06,460 Created temporary directory: /tmp/pip-wheel-_6bp1q2b
2021-04-18T21:38:06,524 1 location(s) to search for versions of ebi-eva-common-pyutils:
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2021-04-18T21:38:06,524 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-04-18T21:38:06,527 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-04-18T21:38:06,531 Found index url https://pypi.org/simple
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2021-04-18T21:38:06,996 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-04-18T21:38:07,032 Collecting ebi-eva-common-pyutils==0.3.10.dev3
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2021-04-18T21:38:07,508     Running command python setup.py egg_info
2021-04-18T21:38:10,015     running egg_info
2021-04-18T21:38:10,022     creating /tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info
2021-04-18T21:38:10,024     writing requirements to /tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info/requires.txt
2021-04-18T21:38:10,029     writing top-level names to /tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-04-18T21:38:10,031     writing dependency_links to /tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-04-18T21:38:10,034     writing /tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-04-18T21:38:10,040     writing manifest file '/tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-04-18T21:38:10,416     reading manifest file '/tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-04-18T21:38:10,426     writing manifest file '/tmp/pip-pip-egg-info-vertrdmy/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-04-18T21:38:10,428     /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.10dev3' to '0.3.10.dev3'
2021-04-18T21:38:10,429       warnings.warn(tmpl.format(**locals()))
2021-04-18T21:38:10,561   Source in /tmp/pip-wheel-_6bp1q2b/ebi-eva-common-pyutils_bff301d6bf12442c95ff78dc22de95bd has version 0.3.10.dev3, which satisfies requirement ebi-eva-common-pyutils==0.3.10.dev3 from https://files.pythonhosted.org/packages/f4/70/ce563acf060a17ee0fe4b9538716910486e7593ad244842ad70714623e80/ebi_eva_common_pyutils-0.3.10.dev3.tar.gz#sha256=75da52da30e598f4032640dbebbb570da7d7d956522d93a61c48611e1249286c
2021-04-18T21:38:10,563   Removed ebi-eva-common-pyutils==0.3.10.dev3 from https://files.pythonhosted.org/packages/f4/70/ce563acf060a17ee0fe4b9538716910486e7593ad244842ad70714623e80/ebi_eva_common_pyutils-0.3.10.dev3.tar.gz#sha256=75da52da30e598f4032640dbebbb570da7d7d956522d93a61c48611e1249286c from build tracker '/tmp/pip-req-tracker-o_68quui'
2021-04-18T21:38:10,572 Created temporary directory: /tmp/pip-unpack-zfpzr881
2021-04-18T21:38:10,573 Building wheels for collected packages: ebi-eva-common-pyutils
2021-04-18T21:38:10,582   Created temporary directory: /tmp/pip-wheel-9xr25gjf
2021-04-18T21:38:10,583   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-04-18T21:38:10,584   Destination directory: /tmp/pip-wheel-9xr25gjf
2021-04-18T21:38:10,585   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_6bp1q2b/ebi-eva-common-pyutils_bff301d6bf12442c95ff78dc22de95bd/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_6bp1q2b/ebi-eva-common-pyutils_bff301d6bf12442c95ff78dc22de95bd/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9xr25gjf
2021-04-18T21:38:12,804   /usr/local/lib/python3.5/dist-packages/setuptools/dist.py:452: UserWarning: Normalizing '0.3.10dev3' to '0.3.10.dev3'
2021-04-18T21:38:12,805     warnings.warn(tmpl.format(**locals()))
2021-04-18T21:38:12,928   running bdist_wheel
2021-04-18T21:38:12,944   running build
2021-04-18T21:38:12,945   running build_py
2021-04-18T21:38:13,283   creating build
2021-04-18T21:38:13,284   creating build/lib
2021-04-18T21:38:13,286   creating build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,289   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,294   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,299   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,304   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,308   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,314   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,319   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,326   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,332   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,339   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,345   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-04-18T21:38:13,352   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-04-18T21:38:13,355   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-04-18T21:38:13,362   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-04-18T21:38:13,369   creating build/lib/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,372   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,379   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,384   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,394   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-04-18T21:38:13,397   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-04-18T21:38:13,403   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-04-18T21:38:13,409   creating build/lib/ebi_eva_common_pyutils/assembly
2021-04-18T21:38:13,412   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-04-18T21:38:13,419   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-04-18T21:38:13,424   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,426   copying ebi_eva_common_pyutils/nextflow/nextflow_pipeline_immutable.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,432   copying ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,438   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,464   installing to build/bdist.linux-armv7l/wheel
2021-04-18T21:38:13,465   running install
2021-04-18T21:38:13,467   running install_lib
2021-04-18T21:38:13,475   creating build/bdist.linux-armv7l
2021-04-18T21:38:13,476   creating build/bdist.linux-armv7l/wheel
2021-04-18T21:38:13,480   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,482   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,488   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-04-18T21:38:13,490   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-04-18T21:38:13,496   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-04-18T21:38:13,500   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,507   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,510   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,516   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,521   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-04-18T21:38:13,528   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,535   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-04-18T21:38:13,538   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-04-18T21:38:13,544   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-04-18T21:38:13,549   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,554   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,560   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,566   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,574   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-04-18T21:38:13,577   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-04-18T21:38:13,584   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-04-18T21:38:13,590   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,595   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,602   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,609   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,611   copying build/lib/ebi_eva_common_pyutils/nextflow/nextflow_pipeline_immutable.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,618   copying build/lib/ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,625   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-04-18T21:38:13,631   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-04-18T21:38:13,636   running install_egg_info
2021-04-18T21:38:13,684   running egg_info
2021-04-18T21:38:13,685   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-04-18T21:38:13,689   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-04-18T21:38:13,693   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-04-18T21:38:13,696   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-04-18T21:38:13,711   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-04-18T21:38:13,724   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-04-18T21:38:13,728   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.10.dev3-py3.5.egg-info
2021-04-18T21:38:13,754   running install_scripts
2021-04-18T21:38:13,954   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.10.dev3.dist-info/WHEEL
2021-04-18T21:38:14,257   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-04-18T21:38:14,262   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.10.dev3-py3-none-any.whl size=32280 sha256=3311ca65991a6aad560d1fb462722c9518fbd542671c70433484f2744ef535ad
2021-04-18T21:38:14,263   Stored in directory: /tmp/pip-ephem-wheel-cache-tgjhlr9e/wheels/70/3c/51/6c19b06b26be6545bef95242b70a4ea072cc83bf8a9558c152
2021-04-18T21:38:14,291 Successfully built ebi-eva-common-pyutils
2021-04-18T21:38:14,303 Removed build tracker: '/tmp/pip-req-tracker-o_68quui'