2021-04-19T18:43:38,944 Created temporary directory: /tmp/pip-ephem-wheel-cache-_gqdq_qo 2021-04-19T18:43:38,947 Created temporary directory: /tmp/pip-req-tracker-ik1yg2yo 2021-04-19T18:43:38,947 Initialized build tracking at /tmp/pip-req-tracker-ik1yg2yo 2021-04-19T18:43:38,947 Created build tracker: /tmp/pip-req-tracker-ik1yg2yo 2021-04-19T18:43:38,947 Entered build tracker: /tmp/pip-req-tracker-ik1yg2yo 2021-04-19T18:43:38,948 Created temporary directory: /tmp/pip-wheel-jg6i_je9 2021-04-19T18:43:38,975 1 location(s) to search for versions of jcvi: 2021-04-19T18:43:38,975 * https://pypi.org/simple/jcvi/ 2021-04-19T18:43:38,976 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2021-04-19T18:43:38,976 Getting page https://pypi.org/simple/jcvi/ 2021-04-19T18:43:38,978 Found index url https://pypi.org/simple 2021-04-19T18:43:38,980 Getting credentials from keyring for https://pypi.org/simple 2021-04-19T18:43:39,325 Loading KWallet 2021-04-19T18:43:39,350 Loading SecretService 2021-04-19T18:43:39,397 Loading Windows 2021-04-19T18:43:39,400 Loading chainer 2021-04-19T18:43:39,401 Loading macOS 2021-04-19T18:43:39,405 Loading Gnome 2021-04-19T18:43:39,445 Loading Google 2021-04-19T18:43:39,449 Loading Windows (alt) 2021-04-19T18:43:39,455 Loading file 2021-04-19T18:43:39,456 Loading keyczar 2021-04-19T18:43:39,457 Loading multi 2021-04-19T18:43:39,458 Loading pyfs 2021-04-19T18:43:39,496 Getting credentials from keyring for pypi.org 2021-04-19T18:43:39,698 Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7 2021-04-19T18:43:39,698 Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8 2021-04-19T18:43:39,699 Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9 2021-04-19T18:43:39,699 Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10 2021-04-19T18:43:39,699 Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12 2021-04-19T18:43:39,700 Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1 2021-04-19T18:43:39,700 Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2 2021-04-19T18:43:39,700 Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3 2021-04-19T18:43:39,700 Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5 2021-04-19T18:43:39,701 Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6 2021-04-19T18:43:39,701 Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7 2021-04-19T18:43:39,701 Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8 2021-04-19T18:43:39,702 Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9 2021-04-19T18:43:39,702 Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1 2021-04-19T18:43:39,702 Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2 2021-04-19T18:43:39,703 Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6 2021-04-19T18:43:39,703 Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9 2021-04-19T18:43:39,703 Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1 2021-04-19T18:43:39,703 Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3 2021-04-19T18:43:39,704 Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4 2021-04-19T18:43:39,704 Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5 2021-04-19T18:43:39,704 Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6 2021-04-19T18:43:39,704 Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7 2021-04-19T18:43:39,705 Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4 2021-04-19T18:43:39,705 Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12 2021-04-19T18:43:39,705 Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6 2021-04-19T18:43:39,706 Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9 2021-04-19T18:43:39,706 Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10 2021-04-19T18:43:39,706 Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11 2021-04-19T18:43:39,706 Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12 2021-04-19T18:43:39,707 Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13 2021-04-19T18:43:39,707 Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14 2021-04-19T18:43:39,707 Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1 2021-04-19T18:43:39,708 Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2021-04-19T18:43:39,708 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2021-04-19T18:43:39,708 Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4 2021-04-19T18:43:39,709 Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2021-04-19T18:43:39,709 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2021-04-19T18:43:39,709 Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7 2021-04-19T18:43:39,709 Found link https://files.pythonhosted.org/packages/79/d2/d570003c0045ea92485ea9c5e8f0561d47bbf18ea8951fe31450ca8961ff/jcvi-1.0.8.tar.gz#sha256=64cf47d3bbcc54dabfa8e20bdae7693dba8de8bd67e6c9c70d3ff16f24cf279e (from https://pypi.org/simple/jcvi/), version: 1.0.8 2021-04-19T18:43:39,710 Found link https://files.pythonhosted.org/packages/97/6f/fb49e1603d4617f0a136f86a94e035be5cf1fe34b9ff59ddfc7e5fc5d04d/jcvi-1.0.9.tar.gz#sha256=b03f2385639b601f111c812872763fee6699aa8f2683431347520f5bf9155480 (from https://pypi.org/simple/jcvi/), version: 1.0.9 2021-04-19T18:43:39,710 Found link https://files.pythonhosted.org/packages/9d/ec/6c6329502b18bcaf244d19a66aab8df287ac99c7cbaa0c047a6c18844de8/jcvi-1.0.10.tar.gz#sha256=56881652b39662a54d32c2f6387e9c58e40a925ac326c9bf1b4ba929b5a86562 (from https://pypi.org/simple/jcvi/), version: 1.0.10 2021-04-19T18:43:39,710 Found link https://files.pythonhosted.org/packages/a4/a0/a9827217e298eefcf6a9e94e26f33512204f50954c6209b8eed418cbe9d7/jcvi-1.0.11.tar.gz#sha256=ced5c0f3c6b0356292aa24736cf9c7848da71dd27c8c9e1e8d7acb77bc620ae3 (from https://pypi.org/simple/jcvi/), version: 1.0.11 2021-04-19T18:43:39,710 Found link https://files.pythonhosted.org/packages/04/42/7b9185888061799c56365598139239d4a48d074dfd2d0ff46c85cc032542/jcvi-1.0.12.tar.gz#sha256=3e55598c6be75b991a76904efe002c9c10a970244f46b2443fe333f934d265fd (from https://pypi.org/simple/jcvi/), version: 1.0.12 2021-04-19T18:43:39,711 Found link https://files.pythonhosted.org/packages/2c/e3/587dd5ddba13f6eff78a78b85d0dc7d008b15e5e28d04fc4081cff9f2ca6/jcvi-1.0.13.tar.gz#sha256=659ada559937f5914113a7a60bdc41bd58ddeadf7c1db974e11271b526e8c963 (from https://pypi.org/simple/jcvi/), version: 1.0.13 2021-04-19T18:43:39,711 Found link https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-04-19T18:43:39,711 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-04-19T18:43:39,712 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-04-19T18:43:39,712 Found link https://files.pythonhosted.org/packages/f3/4d/90ec025ffba6064f62d2480deebee2096b1c581484f5deb807081f68b826/jcvi-1.1.3.tar.gz#sha256=bff23cbdfa634dd22beff778e7405d509414d3a98b7531397b03db3e0f7037e5 (from https://pypi.org/simple/jcvi/), version: 1.1.3 2021-04-19T18:43:39,712 Found link https://files.pythonhosted.org/packages/aa/77/af2e6dbb516a39b09f908e85b2e1f52c8003bcf822f59434b1241da7d057/jcvi-1.1.4.tar.gz#sha256=de96b414804a5a9884845cc5923e6772339ea86b3aae40d02841e59944ce1777 (from https://pypi.org/simple/jcvi/), version: 1.1.4 2021-04-19T18:43:39,712 Found link https://files.pythonhosted.org/packages/32/89/5d32094c25a676e1d43eec6c4cc8f6eeef77f939286faece04986ef491bd/jcvi-1.1.5.tar.gz#sha256=9879ca50acfbc2f42afd26a7c211ae3653edfc70fcafa4848985c215a51dbe0b (from https://pypi.org/simple/jcvi/), version: 1.1.5 2021-04-19T18:43:39,713 Found link https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-04-19T18:43:39,713 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-04-19T18:43:39,713 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-04-19T18:43:39,714 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-04-19T18:43:39,714 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-04-19T18:43:39,714 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-04-19T18:43:39,714 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-04-19T18:43:39,763 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-04-19T18:43:39,779 Collecting jcvi==1.1.12 2021-04-19T18:43:39,781 Created temporary directory: /tmp/pip-unpack-6fbt9w48 2021-04-19T18:43:39,783 Getting credentials from keyring for files.pythonhosted.org 2021-04-19T18:43:39,823 Downloading jcvi-1.1.12.tar.gz (820 kB) 2021-04-19T18:43:40,608 Added jcvi==1.1.12 from https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe to build tracker '/tmp/pip-req-tracker-ik1yg2yo' 2021-04-19T18:43:40,609 Running setup.py (path:/tmp/pip-wheel-jg6i_je9/jcvi_e5e7b5fd43c146809c799ed02a2f68ae/setup.py) egg_info for package jcvi 2021-04-19T18:43:40,610 Created temporary directory: /tmp/pip-pip-egg-info-x3ueou8i 2021-04-19T18:43:40,610 Running command python setup.py egg_info 2021-04-19T18:43:42,299 running egg_info 2021-04-19T18:43:42,302 creating /tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info 2021-04-19T18:43:42,303 writing /tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info/PKG-INFO 2021-04-19T18:43:42,307 writing dependency_links to /tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info/dependency_links.txt 2021-04-19T18:43:42,310 writing requirements to /tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info/requires.txt 2021-04-19T18:43:42,311 writing top-level names to /tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info/top_level.txt 2021-04-19T18:43:42,313 writing manifest file '/tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info/SOURCES.txt' 2021-04-19T18:43:42,338 reading manifest file '/tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info/SOURCES.txt' 2021-04-19T18:43:42,340 reading manifest template 'MANIFEST.in' 2021-04-19T18:43:42,352 writing manifest file '/tmp/pip-pip-egg-info-x3ueou8i/jcvi.egg-info/SOURCES.txt' 2021-04-19T18:43:42,354 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:461: UserWarning: Normalizing 'v1.1.12' to '1.1.12' 2021-04-19T18:43:42,354 warnings.warn(tmpl.format(**locals())) 2021-04-19T18:43:42,448 Source in /tmp/pip-wheel-jg6i_je9/jcvi_e5e7b5fd43c146809c799ed02a2f68ae has version 1.1.12, which satisfies requirement jcvi==1.1.12 from https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe 2021-04-19T18:43:42,449 Removed jcvi==1.1.12 from https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe from build tracker '/tmp/pip-req-tracker-ik1yg2yo' 2021-04-19T18:43:42,455 Created temporary directory: /tmp/pip-unpack-nzajb0vn 2021-04-19T18:43:42,455 Building wheels for collected packages: jcvi 2021-04-19T18:43:42,460 Created temporary directory: /tmp/pip-wheel-bx5okej4 2021-04-19T18:43:42,461 Building wheel for jcvi (setup.py): started 2021-04-19T18:43:42,461 Destination directory: /tmp/pip-wheel-bx5okej4 2021-04-19T18:43:42,461 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jg6i_je9/jcvi_e5e7b5fd43c146809c799ed02a2f68ae/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jg6i_je9/jcvi_e5e7b5fd43c146809c799ed02a2f68ae/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bx5okej4 2021-04-19T18:43:43,987 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:461: UserWarning: Normalizing 'v1.1.12' to '1.1.12' 2021-04-19T18:43:43,988 warnings.warn(tmpl.format(**locals())) 2021-04-19T18:43:44,046 running bdist_wheel 2021-04-19T18:43:44,051 running build 2021-04-19T18:43:44,051 running build_py 2021-04-19T18:43:44,056 creating build 2021-04-19T18:43:44,057 creating build/lib.linux-armv7l-3.7 2021-04-19T18:43:44,058 creating build/lib.linux-armv7l-3.7/jcvi 2021-04-19T18:43:44,059 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2021-04-19T18:43:44,061 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2021-04-19T18:43:44,064 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,065 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,067 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,069 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,071 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,074 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,076 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,079 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,081 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,083 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,086 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,088 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,091 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-04-19T18:43:44,095 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,096 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,101 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,104 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,107 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,109 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,112 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,115 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,118 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,119 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,122 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,124 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,126 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,129 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,133 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,135 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,140 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,144 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,147 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,150 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,154 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,156 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,160 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,162 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,166 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,168 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,171 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,175 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,179 creating build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,180 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,183 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,185 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,188 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,191 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,193 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,195 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,197 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,199 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,202 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,205 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,207 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,210 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,213 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,215 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,218 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,221 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,225 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,228 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,231 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,233 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,237 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,239 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,242 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,246 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,249 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,252 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,257 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,260 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,263 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,268 creating build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,269 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,271 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,273 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,275 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,278 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,281 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,283 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,285 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,289 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,293 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-04-19T18:43:44,297 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,298 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,301 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,303 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,306 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,308 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,310 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,313 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,316 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,319 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,322 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,325 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,328 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-04-19T18:43:44,333 creating build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,334 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,337 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,341 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,344 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,346 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,348 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,350 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,353 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,356 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,358 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,361 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,364 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,366 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,369 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,371 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,373 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,376 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,379 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,382 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,384 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,388 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,391 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,394 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,396 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,400 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,402 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-04-19T18:43:44,406 creating build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,407 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,409 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,411 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,414 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,417 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,419 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,422 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,424 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,427 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,430 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,432 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,434 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,437 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-04-19T18:43:44,441 creating build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,442 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,445 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,447 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,450 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,453 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,457 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,460 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,463 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,465 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,468 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,471 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-04-19T18:43:44,475 creating build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,476 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,480 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,482 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,485 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,487 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,490 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,492 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,495 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,497 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,500 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,504 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,508 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,511 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,514 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,517 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,519 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,522 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-04-19T18:43:44,526 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,527 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,531 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,534 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,537 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,540 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,543 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,546 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,550 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,553 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,557 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,561 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,565 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,568 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,572 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,575 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,578 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,581 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,583 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,587 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,590 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,593 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,595 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,599 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-04-19T18:43:44,603 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,605 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,607 running egg_info 2021-04-19T18:43:44,639 writing jcvi.egg-info/PKG-INFO 2021-04-19T18:43:44,641 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-04-19T18:43:44,644 writing requirements to jcvi.egg-info/requires.txt 2021-04-19T18:43:44,645 writing top-level names to jcvi.egg-info/top_level.txt 2021-04-19T18:43:44,666 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-04-19T18:43:44,673 reading manifest template 'MANIFEST.in' 2021-04-19T18:43:44,690 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-04-19T18:43:44,698 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:44,701 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:44,704 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,708 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,715 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,719 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,723 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,727 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,730 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,734 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,737 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,741 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,746 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,750 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-04-19T18:43:44,771 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2021-04-19T18:43:44,773 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.1.12' 2021-04-19T18:43:44,774 running build_ext 2021-04-19T18:43:44,837 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-04-19T18:43:45,662 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jg6i_je9/jcvi_e5e7b5fd43c146809c799ed02a2f68ae/jcvi/assembly/chic.pyx 2021-04-19T18:43:45,663 tree = Parsing.p_module(s, pxd, full_module_name) 2021-04-19T18:43:48,674 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-04-19T18:43:48,682 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-jg6i_je9/jcvi_e5e7b5fd43c146809c799ed02a2f68ae/jcvi/formats/cblast.pyx 2021-04-19T18:43:48,682 tree = Parsing.p_module(s, pxd, full_module_name) 2021-04-19T18:43:49,681 building 'jcvi.assembly.chic' extension 2021-04-19T18:43:49,682 creating build/temp.linux-armv7l-3.7 2021-04-19T18:43:49,682 creating build/temp.linux-armv7l-3.7/jcvi 2021-04-19T18:43:49,684 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2021-04-19T18:43:49,685 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2021-04-19T18:43:50,033 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944, 2021-04-19T18:43:50,033 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-04-19T18:43:50,033 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-04-19T18:43:50,033 from jcvi/assembly/chic.c:610: 2021-04-19T18:43:50,034 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-04-19T18:43:50,034 #warning "Using deprecated NumPy API, disable it with " \ 2021-04-19T18:43:50,034 ^~~~~~~ 2021-04-19T18:43:53,670 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2021-04-19T18:43:53,813 building 'jcvi.formats.cblast' extension 2021-04-19T18:43:53,814 creating build/temp.linux-armv7l-3.7/jcvi/formats 2021-04-19T18:43:53,815 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2021-04-19T18:44:00,832 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2021-04-19T18:44:01,220 installing to build/bdist.linux-armv7l/wheel 2021-04-19T18:44:01,220 running install 2021-04-19T18:44:01,222 running install_lib 2021-04-19T18:44:01,226 creating build/bdist.linux-armv7l 2021-04-19T18:44:01,227 creating build/bdist.linux-armv7l/wheel 2021-04-19T18:44:01,230 creating build/bdist.linux-armv7l/wheel/jcvi 2021-04-19T18:44:01,232 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-04-19T18:44:01,235 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,237 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,239 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,242 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,245 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,249 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,252 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,255 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,258 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,263 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,266 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,270 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,273 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-04-19T18:44:01,279 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,281 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,286 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,290 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,294 copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,298 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,302 copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,306 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,310 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,312 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,316 copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,320 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,323 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,326 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,330 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,333 copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,336 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,341 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,345 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,349 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,354 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,363 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,368 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,373 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,377 copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,380 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,384 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,388 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,391 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,395 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-04-19T18:44:01,399 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,401 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,404 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,407 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,410 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,414 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,430 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,432 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,435 copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,438 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,441 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,444 copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,447 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,450 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,454 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,460 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,463 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,466 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,469 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,473 copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,478 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,481 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,484 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,487 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,491 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,494 copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,498 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,503 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,506 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,509 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,516 copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,519 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,525 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-04-19T18:44:01,529 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,531 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,533 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,536 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,539 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,542 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,545 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,548 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,551 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,556 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,560 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-04-19T18:44:01,564 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,566 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,570 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,573 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,576 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,579 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,581 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,590 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,593 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,597 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,600 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,604 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,608 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-04-19T18:44:01,612 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,614 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,617 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,622 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,627 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,630 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,632 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,635 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,638 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,641 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,644 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,647 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,651 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,654 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,657 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,660 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,663 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,667 copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,670 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,673 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,677 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,681 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,685 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,688 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,691 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,695 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,698 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-04-19T18:44:01,702 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,703 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,706 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,709 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,712 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,715 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,718 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,722 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,724 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,726 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,728 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,731 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,735 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,739 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,745 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,749 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,753 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,756 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,759 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,763 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,766 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-04-19T18:44:01,769 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,772 copying build/lib.linux-armv7l-3.7/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,774 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,778 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,780 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,784 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,787 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-04-19T18:44:01,790 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-04-19T18:44:01,794 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,795 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,798 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,801 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,805 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,808 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,813 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,816 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,820 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,824 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,827 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,831 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-04-19T18:44:01,834 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,835 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,839 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,841 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,846 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,849 copying build/lib.linux-armv7l-3.7/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,853 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,856 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,859 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,862 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,865 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,868 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,873 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,876 copying build/lib.linux-armv7l-3.7/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,879 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,883 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,886 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,888 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-04-19T18:44:01,893 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,894 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,897 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,900 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,902 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,904 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,907 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,910 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,914 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,916 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,919 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,923 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,926 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,929 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,932 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,936 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,939 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,941 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,943 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,947 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,950 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,952 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,955 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,957 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-04-19T18:44:01,960 running install_egg_info 2021-04-19T18:44:01,971 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.12-py3.7.egg-info 2021-04-19T18:44:01,989 running install_scripts 2021-04-19T18:44:02,066 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-04-19T18:44:02,073 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.12.dist-info/WHEEL 2021-04-19T18:44:02,077 creating '/tmp/pip-wheel-bx5okej4/jcvi-1.1.12-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-04-19T18:44:02,080 adding 'jcvi/__init__.py' 2021-04-19T18:44:02,081 adding 'jcvi/_version.py' 2021-04-19T18:44:02,084 adding 'jcvi/algorithms/__init__.py' 2021-04-19T18:44:02,086 adding 'jcvi/algorithms/__main__.py' 2021-04-19T18:44:02,088 adding 'jcvi/algorithms/ec.py' 2021-04-19T18:44:02,090 adding 'jcvi/algorithms/formula.py' 2021-04-19T18:44:02,093 adding 'jcvi/algorithms/graph.py' 2021-04-19T18:44:02,095 adding 'jcvi/algorithms/lis.py' 2021-04-19T18:44:02,099 adding 'jcvi/algorithms/lpsolve.py' 2021-04-19T18:44:02,101 adding 'jcvi/algorithms/matrix.py' 2021-04-19T18:44:02,103 adding 'jcvi/algorithms/maxsum.py' 2021-04-19T18:44:02,105 adding 'jcvi/algorithms/ml.py' 2021-04-19T18:44:02,107 adding 'jcvi/algorithms/supermap.py' 2021-04-19T18:44:02,110 adding 'jcvi/algorithms/tsp.py' 2021-04-19T18:44:02,112 adding 'jcvi/annotation/__init__.py' 2021-04-19T18:44:02,113 adding 'jcvi/annotation/__main__.py' 2021-04-19T18:44:02,116 adding 'jcvi/annotation/ahrd.py' 2021-04-19T18:44:02,118 adding 'jcvi/annotation/automaton.py' 2021-04-19T18:44:02,120 adding 'jcvi/annotation/depth.py' 2021-04-19T18:44:02,122 adding 'jcvi/annotation/evm.py' 2021-04-19T18:44:02,125 adding 'jcvi/annotation/maker.py' 2021-04-19T18:44:02,129 adding 'jcvi/annotation/pasa.py' 2021-04-19T18:44:02,132 adding 'jcvi/annotation/qc.py' 2021-04-19T18:44:02,139 adding 'jcvi/annotation/reformat.py' 2021-04-19T18:44:02,142 adding 'jcvi/annotation/stats.py' 2021-04-19T18:44:02,145 adding 'jcvi/annotation/train.py' 2021-04-19T18:44:02,147 adding 'jcvi/apps/__init__.py' 2021-04-19T18:44:02,149 adding 'jcvi/apps/__main__.py' 2021-04-19T18:44:02,151 adding 'jcvi/apps/align.py' 2021-04-19T18:44:02,161 adding 'jcvi/apps/base.py' 2021-04-19T18:44:02,164 adding 'jcvi/apps/biomart.py' 2021-04-19T18:44:02,166 adding 'jcvi/apps/blastplus.py' 2021-04-19T18:44:02,168 adding 'jcvi/apps/bowtie.py' 2021-04-19T18:44:02,170 adding 'jcvi/apps/bwa.py' 2021-04-19T18:44:02,172 adding 'jcvi/apps/cap3.py' 2021-04-19T18:44:02,174 adding 'jcvi/apps/cdhit.py' 2021-04-19T18:44:02,175 adding 'jcvi/apps/emboss.py' 2021-04-19T18:44:02,179 adding 'jcvi/apps/fetch.py' 2021-04-19T18:44:02,182 adding 'jcvi/apps/gbsubmit.py' 2021-04-19T18:44:02,184 adding 'jcvi/apps/gmap.py' 2021-04-19T18:44:02,186 adding 'jcvi/apps/grid.py' 2021-04-19T18:44:02,192 adding 'jcvi/apps/ks.py' 2021-04-19T18:44:02,194 adding 'jcvi/apps/lastz.py' 2021-04-19T18:44:02,196 adding 'jcvi/apps/mask.py' 2021-04-19T18:44:02,201 adding 'jcvi/apps/phylo.py' 2021-04-19T18:44:02,202 adding 'jcvi/apps/r.py' 2021-04-19T18:44:02,204 adding 'jcvi/apps/restriction.py' 2021-04-19T18:44:02,205 adding 'jcvi/apps/script.py' 2021-04-19T18:44:02,207 adding 'jcvi/apps/softlink.py' 2021-04-19T18:44:02,212 adding 'jcvi/apps/uclust.py' 2021-04-19T18:44:02,214 adding 'jcvi/apps/uniprot.py' 2021-04-19T18:44:02,215 adding 'jcvi/apps/vecscreen.py' 2021-04-19T18:44:02,218 adding 'jcvi/assembly/__init__.py' 2021-04-19T18:44:02,219 adding 'jcvi/assembly/__main__.py' 2021-04-19T18:44:02,229 adding 'jcvi/assembly/allmaps.py' 2021-04-19T18:44:02,232 adding 'jcvi/assembly/allpaths.py' 2021-04-19T18:44:02,234 adding 'jcvi/assembly/amos.py' 2021-04-19T18:44:02,236 adding 'jcvi/assembly/automaton.py' 2021-04-19T18:44:02,238 adding 'jcvi/assembly/bambus.py' 2021-04-19T18:44:02,239 adding 'jcvi/assembly/base.py' 2021-04-19T18:44:02,244 adding 'jcvi/assembly/ca.py' 2021-04-19T18:44:02,294 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2021-04-19T18:44:02,297 adding 'jcvi/assembly/chic.pyx' 2021-04-19T18:44:02,298 adding 'jcvi/assembly/coverage.py' 2021-04-19T18:44:02,300 adding 'jcvi/assembly/gaps.py' 2021-04-19T18:44:02,303 adding 'jcvi/assembly/geneticmap.py' 2021-04-19T18:44:02,308 adding 'jcvi/assembly/goldenpath.py' 2021-04-19T18:44:02,316 adding 'jcvi/assembly/hic.py' 2021-04-19T18:44:02,321 adding 'jcvi/assembly/kmer.py' 2021-04-19T18:44:02,323 adding 'jcvi/assembly/meraculous.py' 2021-04-19T18:44:02,325 adding 'jcvi/assembly/opticalmap.py' 2021-04-19T18:44:02,330 adding 'jcvi/assembly/patch.py' 2021-04-19T18:44:02,332 adding 'jcvi/assembly/pbjelly.py' 2021-04-19T18:44:02,334 adding 'jcvi/assembly/postprocess.py' 2021-04-19T18:44:02,338 adding 'jcvi/assembly/preprocess.py' 2021-04-19T18:44:02,340 adding 'jcvi/assembly/sim.py' 2021-04-19T18:44:02,342 adding 'jcvi/assembly/soap.py' 2021-04-19T18:44:02,344 adding 'jcvi/assembly/sspace.py' 2021-04-19T18:44:02,346 adding 'jcvi/assembly/syntenypath.py' 2021-04-19T18:44:02,348 adding 'jcvi/assembly/trinity.py' 2021-04-19T18:44:02,350 adding 'jcvi/assembly/unitig.py' 2021-04-19T18:44:02,352 adding 'jcvi/compara/__init__.py' 2021-04-19T18:44:02,353 adding 'jcvi/compara/__main__.py' 2021-04-19T18:44:02,355 adding 'jcvi/compara/blastfilter.py' 2021-04-19T18:44:02,359 adding 'jcvi/compara/catalog.py' 2021-04-19T18:44:02,364 adding 'jcvi/compara/fractionation.py' 2021-04-19T18:44:02,366 adding 'jcvi/compara/pad.py' 2021-04-19T18:44:02,368 adding 'jcvi/compara/phylogeny.py' 2021-04-19T18:44:02,371 adding 'jcvi/compara/quota.py' 2021-04-19T18:44:02,373 adding 'jcvi/compara/reconstruct.py' 2021-04-19T18:44:02,375 adding 'jcvi/compara/synfind.py' 2021-04-19T18:44:02,384 adding 'jcvi/compara/synteny.py' 2021-04-19T18:44:02,387 adding 'jcvi/formats/__init__.py' 2021-04-19T18:44:02,389 adding 'jcvi/formats/__main__.py' 2021-04-19T18:44:02,390 adding 'jcvi/formats/ace.py' 2021-04-19T18:44:02,398 adding 'jcvi/formats/agp.py' 2021-04-19T18:44:02,403 adding 'jcvi/formats/base.py' 2021-04-19T18:44:02,413 adding 'jcvi/formats/bed.py' 2021-04-19T18:44:02,419 adding 'jcvi/formats/blast.py' 2021-04-19T18:44:02,421 adding 'jcvi/formats/btab.py' 2021-04-19T18:44:02,524 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2021-04-19T18:44:02,529 adding 'jcvi/formats/cblast.pyx' 2021-04-19T18:44:02,531 adding 'jcvi/formats/cdt.py' 2021-04-19T18:44:02,532 adding 'jcvi/formats/chain.py' 2021-04-19T18:44:02,534 adding 'jcvi/formats/contig.py' 2021-04-19T18:44:02,536 adding 'jcvi/formats/coords.py' 2021-04-19T18:44:02,538 adding 'jcvi/formats/excel.py' 2021-04-19T18:44:02,548 adding 'jcvi/formats/fasta.py' 2021-04-19T18:44:02,552 adding 'jcvi/formats/fastq.py' 2021-04-19T18:44:02,554 adding 'jcvi/formats/fpc.py' 2021-04-19T18:44:02,557 adding 'jcvi/formats/genbank.py' 2021-04-19T18:44:02,572 adding 'jcvi/formats/gff.py' 2021-04-19T18:44:02,574 adding 'jcvi/formats/html.py' 2021-04-19T18:44:02,576 adding 'jcvi/formats/maf.py' 2021-04-19T18:44:02,577 adding 'jcvi/formats/obo.py' 2021-04-19T18:44:02,579 adding 'jcvi/formats/paf.py' 2021-04-19T18:44:02,580 adding 'jcvi/formats/pdf.py' 2021-04-19T18:44:02,582 adding 'jcvi/formats/posmap.py' 2021-04-19T18:44:02,584 adding 'jcvi/formats/psl.py' 2021-04-19T18:44:02,585 adding 'jcvi/formats/pyblast.py' 2021-04-19T18:44:02,589 adding 'jcvi/formats/sam.py' 2021-04-19T18:44:02,591 adding 'jcvi/formats/sbt.py' 2021-04-19T18:44:02,593 adding 'jcvi/formats/sizes.py' 2021-04-19T18:44:02,598 adding 'jcvi/formats/vcf.py' 2021-04-19T18:44:02,600 adding 'jcvi/graphics/__init__.py' 2021-04-19T18:44:02,602 adding 'jcvi/graphics/__main__.py' 2021-04-19T18:44:02,605 adding 'jcvi/graphics/align.py' 2021-04-19T18:44:02,608 adding 'jcvi/graphics/assembly.py' 2021-04-19T18:44:02,611 adding 'jcvi/graphics/base.py' 2021-04-19T18:44:02,614 adding 'jcvi/graphics/blastplot.py' 2021-04-19T18:44:02,617 adding 'jcvi/graphics/chromosome.py' 2021-04-19T18:44:02,621 adding 'jcvi/graphics/coverage.py' 2021-04-19T18:44:02,623 adding 'jcvi/graphics/dotplot.py' 2021-04-19T18:44:02,627 adding 'jcvi/graphics/glyph.py' 2021-04-19T18:44:02,631 adding 'jcvi/graphics/grabseeds.py' 2021-04-19T18:44:02,633 adding 'jcvi/graphics/graph.py' 2021-04-19T18:44:02,635 adding 'jcvi/graphics/heatmap.py' 2021-04-19T18:44:02,637 adding 'jcvi/graphics/histogram.py' 2021-04-19T18:44:02,639 adding 'jcvi/graphics/karyotype.py' 2021-04-19T18:44:02,644 adding 'jcvi/graphics/landscape.py' 2021-04-19T18:44:02,646 adding 'jcvi/graphics/logo.py' 2021-04-19T18:44:02,647 adding 'jcvi/graphics/mummerplot.py' 2021-04-19T18:44:02,650 adding 'jcvi/graphics/synteny.py' 2021-04-19T18:44:02,652 adding 'jcvi/graphics/table.py' 2021-04-19T18:44:02,656 adding 'jcvi/graphics/tree.py' 2021-04-19T18:44:02,658 adding 'jcvi/graphics/wheel.py' 2021-04-19T18:44:02,659 adding 'jcvi/graphics/whisker.py' 2021-04-19T18:44:02,661 adding 'jcvi/projects/__init__.py' 2021-04-19T18:44:02,663 adding 'jcvi/projects/__main__.py' 2021-04-19T18:44:02,665 adding 'jcvi/projects/age.py' 2021-04-19T18:44:02,667 adding 'jcvi/projects/alfalfa.py' 2021-04-19T18:44:02,670 adding 'jcvi/projects/allmaps.py' 2021-04-19T18:44:02,671 adding 'jcvi/projects/bites.py' 2021-04-19T18:44:02,673 adding 'jcvi/projects/heterosis.py' 2021-04-19T18:44:02,675 adding 'jcvi/projects/ies.py' 2021-04-19T18:44:02,679 adding 'jcvi/projects/misc.py' 2021-04-19T18:44:02,682 adding 'jcvi/projects/napus.py' 2021-04-19T18:44:02,685 adding 'jcvi/projects/pineapple.py' 2021-04-19T18:44:02,686 adding 'jcvi/projects/pistachio.py' 2021-04-19T18:44:02,695 adding 'jcvi/projects/str.py' 2021-04-19T18:44:02,698 adding 'jcvi/projects/sugarcane.py' 2021-04-19T18:44:02,701 adding 'jcvi/projects/synfind.py' 2021-04-19T18:44:02,705 adding 'jcvi/projects/tgbs.py' 2021-04-19T18:44:02,708 adding 'jcvi/projects/vanilla.py' 2021-04-19T18:44:02,711 adding 'jcvi/utils/__init__.py' 2021-04-19T18:44:02,712 adding 'jcvi/utils/__main__.py' 2021-04-19T18:44:02,715 adding 'jcvi/utils/aws.py' 2021-04-19T18:44:02,718 adding 'jcvi/utils/cbook.py' 2021-04-19T18:44:02,719 adding 'jcvi/utils/console.py' 2021-04-19T18:44:02,721 adding 'jcvi/utils/db.py' 2021-04-19T18:44:02,723 adding 'jcvi/utils/ez_setup.py' 2021-04-19T18:44:02,724 adding 'jcvi/utils/grouper.py' 2021-04-19T18:44:02,726 adding 'jcvi/utils/orderedcollections.py' 2021-04-19T18:44:02,729 adding 'jcvi/utils/range.py' 2021-04-19T18:44:02,731 adding 'jcvi/utils/table.py' 2021-04-19T18:44:02,733 adding 'jcvi/utils/taxonomy.py' 2021-04-19T18:44:02,734 adding 'jcvi/utils/webcolors.py' 2021-04-19T18:44:02,737 adding 'jcvi/utils/data/Airswing.ttf' 2021-04-19T18:44:02,754 adding 'jcvi/utils/data/Collegia.ttf' 2021-04-19T18:44:02,759 adding 'jcvi/utils/data/HookedUp.ttf' 2021-04-19T18:44:02,764 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-04-19T18:44:02,768 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-04-19T18:44:02,770 adding 'jcvi/utils/data/__init__.py' 2021-04-19T18:44:02,771 adding 'jcvi/utils/data/adapters.fasta' 2021-04-19T18:44:02,772 adding 'jcvi/utils/data/blosum80.mat' 2021-04-19T18:44:02,774 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-04-19T18:44:02,775 adding 'jcvi/utils/data/colorchecker.txt' 2021-04-19T18:44:02,781 adding 'jcvi/utils/data/hg38.band.txt' 2021-04-19T18:44:02,784 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-04-19T18:44:02,785 adding 'jcvi/utils/data/instance.json' 2021-04-19T18:44:02,788 adding 'jcvi/variation/__init__.py' 2021-04-19T18:44:02,789 adding 'jcvi/variation/__main__.py' 2021-04-19T18:44:02,794 adding 'jcvi/variation/cnv.py' 2021-04-19T18:44:02,796 adding 'jcvi/variation/deconvolute.py' 2021-04-19T18:44:02,798 adding 'jcvi/variation/delly.py' 2021-04-19T18:44:02,801 adding 'jcvi/variation/impute.py' 2021-04-19T18:44:02,802 adding 'jcvi/variation/phase.py' 2021-04-19T18:44:02,805 adding 'jcvi/variation/snp.py' 2021-04-19T18:44:02,812 adding 'jcvi/variation/str.py' 2021-04-19T18:44:02,813 adding 'jcvi/variation/tassel.py' 2021-04-19T18:44:02,816 adding 'jcvi-1.1.12.dist-info/LICENSE' 2021-04-19T18:44:02,817 adding 'jcvi-1.1.12.dist-info/METADATA' 2021-04-19T18:44:02,818 adding 'jcvi-1.1.12.dist-info/WHEEL' 2021-04-19T18:44:02,820 adding 'jcvi-1.1.12.dist-info/top_level.txt' 2021-04-19T18:44:02,822 adding 'jcvi-1.1.12.dist-info/RECORD' 2021-04-19T18:44:02,844 removing build/bdist.linux-armv7l/wheel 2021-04-19T18:44:03,152 Building wheel for jcvi (setup.py): finished with status 'done' 2021-04-19T18:44:03,167 Created wheel for jcvi: filename=jcvi-1.1.12-cp37-cp37m-linux_armv7l.whl size=1184807 sha256=3fdbc68d6637e88777986a97f3e5e58cfc37b41e56a46e22cf1e186b3c78f8e9 2021-04-19T18:44:03,168 Stored in directory: /tmp/pip-ephem-wheel-cache-_gqdq_qo/wheels/e9/78/e0/5eb85bcb2b796646dd0a1548ee48b158046d48ad9b8690bc4f 2021-04-19T18:44:03,190 Successfully built jcvi 2021-04-19T18:44:03,286 Removed build tracker: '/tmp/pip-req-tracker-ik1yg2yo'