2021-04-20T17:10:16,200 Created temporary directory: /tmp/pip-ephem-wheel-cache-u436i0j0 2021-04-20T17:10:16,203 Created temporary directory: /tmp/pip-req-tracker-w79r5c1t 2021-04-20T17:10:16,204 Initialized build tracking at /tmp/pip-req-tracker-w79r5c1t 2021-04-20T17:10:16,204 Created build tracker: /tmp/pip-req-tracker-w79r5c1t 2021-04-20T17:10:16,204 Entered build tracker: /tmp/pip-req-tracker-w79r5c1t 2021-04-20T17:10:16,205 Created temporary directory: /tmp/pip-wheel-ptz9e9bz 2021-04-20T17:10:16,232 1 location(s) to search for versions of sequana: 2021-04-20T17:10:16,232 * https://pypi.org/simple/sequana/ 2021-04-20T17:10:16,233 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2021-04-20T17:10:16,233 Getting page https://pypi.org/simple/sequana/ 2021-04-20T17:10:16,235 Found index url https://pypi.org/simple 2021-04-20T17:10:16,237 Getting credentials from keyring for https://pypi.org/simple 2021-04-20T17:10:16,577 Loading KWallet 2021-04-20T17:10:16,601 Loading SecretService 2021-04-20T17:10:16,648 Loading Windows 2021-04-20T17:10:16,651 Loading chainer 2021-04-20T17:10:16,652 Loading macOS 2021-04-20T17:10:16,655 Loading Gnome 2021-04-20T17:10:16,695 Loading Google 2021-04-20T17:10:16,699 Loading Windows (alt) 2021-04-20T17:10:16,705 Loading file 2021-04-20T17:10:16,706 Loading keyczar 2021-04-20T17:10:16,707 Loading multi 2021-04-20T17:10:16,708 Loading pyfs 2021-04-20T17:10:16,746 Getting credentials from keyring for pypi.org 2021-04-20T17:10:16,954 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz#sha256=5a68ea464596221cc2136bd406532e551e024858401306ce220d74f33dc67a25 (from https://pypi.org/simple/sequana/), version: 0.0.2 2021-04-20T17:10:16,955 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz#sha256=a35665981a7dc3bc0f4c616771deff660f200b68ddcf7111ddbf50954783ada6 (from https://pypi.org/simple/sequana/), version: 0.0.3 2021-04-20T17:10:16,955 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz#sha256=003f89e7a3661f85300aa7469bd103e513f183b2d31c38658ee20d413a26b6e6 (from https://pypi.org/simple/sequana/), version: 0.1.0 2021-04-20T17:10:16,956 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz#sha256=14170dd319f68d60f106596506e5ddb77e52fe14ce7a5a41ae06172149f6effd (from https://pypi.org/simple/sequana/), version: 0.1.1 2021-04-20T17:10:16,956 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz#sha256=67a3165a43783d919587a50086c9809b142332e7ffe32c32956dfccf3f6ce759 (from https://pypi.org/simple/sequana/), version: 0.1.2 2021-04-20T17:10:16,956 Found link https://files.pythonhosted.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz#sha256=53e6f4deb016c55202264adefc65d503c9a512389f67bd4c656ace5c00fca1d3 (from https://pypi.org/simple/sequana/), version: 0.1.4 2021-04-20T17:10:16,956 Found link https://files.pythonhosted.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz#sha256=5a9b672fcce8ced9fbc3fc0bc86d9f7463860929f329391466a0a1330cf3618f (from https://pypi.org/simple/sequana/), version: 0.1.5 2021-04-20T17:10:16,957 Found link https://files.pythonhosted.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz#sha256=014e162eb8b0a5fc27ab63191849f0407d73c0a7b8b7e559b2b70b7e39cc4113 (from https://pypi.org/simple/sequana/), version: 0.1.6 2021-04-20T17:10:16,957 Found link https://files.pythonhosted.org/packages/e2/68/6d81996d2150c703936789e5f763758f1abd852cb70a305d27a72f4ad07e/sequana-0.1.7.tar.gz#sha256=a6b544d73f5c444e9153e5d1fbe372d96f2fbd7ba12f068fc0b5d42d5afdfded (from https://pypi.org/simple/sequana/), version: 0.1.7 2021-04-20T17:10:16,957 Found link https://files.pythonhosted.org/packages/7d/07/16a171ad4d3b7b16f84b0daf209fe08c69049d3b2a999b9f033efc489b50/sequana-0.1.8.tar.gz#sha256=0eaa62a22bc0e4dfd0d4dc1ef1541bf46dbeac91eec7c9a37d53dd3dfa65aad3 (from https://pypi.org/simple/sequana/), version: 0.1.8 2021-04-20T17:10:16,958 Found link https://files.pythonhosted.org/packages/35/e4/866a0e92729208de63257f5cf28fcb8a55f17f7782625c0b76c25bc6e36d/sequana-0.1.9.tar.gz#sha256=e3ff0a4a524f5347d8ec56ea5c0c38b471e50fa99025e2f13975b095ae7c9a9c (from https://pypi.org/simple/sequana/), version: 0.1.9 2021-04-20T17:10:16,958 Found link https://files.pythonhosted.org/packages/41/e3/fb07d2f2af1ecb9723985d41e4bb5381b2ce629def70de356d01b4073bc2/sequana-0.1.10.tar.gz#sha256=747aea49cb0ed23408ec1d0546599d60deeb7d4ce2c488606b54e5484a0ff16e (from https://pypi.org/simple/sequana/), version: 0.1.10 2021-04-20T17:10:16,958 Found link https://files.pythonhosted.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz#sha256=e43a4d61b2aaa281aa04cbd1fa5e047a8fde9058654462f923fc95339c2791d1 (from https://pypi.org/simple/sequana/), version: 0.1.11 2021-04-20T17:10:16,959 Found link https://files.pythonhosted.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz#sha256=8039374e99b48a2d6713a885b12d2b468f7b34b1bee97dba73b47f5170137d9a (from https://pypi.org/simple/sequana/), version: 0.1.12 2021-04-20T17:10:16,959 Found link https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz#sha256=243f97f14e55e1a63066387a40210f6fae69ace1867d37c944b5c2adca02aa56 (from https://pypi.org/simple/sequana/), version: 0.1.13 2021-04-20T17:10:16,959 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz#sha256=56de9f1ad75975640048dd487880d5806b4c4171be519afb114af7e1a1c2524c (from https://pypi.org/simple/sequana/), version: 0.1.14 2021-04-20T17:10:16,959 Found link https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz#sha256=367f01afbf53b9daa5fb3c2d1f0b572f47c1eb5e2499263c1d7d037e30d86a69 (from https://pypi.org/simple/sequana/), version: 0.1.15 2021-04-20T17:10:16,960 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz#sha256=c129726c5ba906898d2b64ae0e6c55e922cad57f9899527fb764aa4641d3d124 (from https://pypi.org/simple/sequana/), version: 0.1.16 2021-04-20T17:10:16,960 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz#sha256=c986cfd188b2b9926fa47a441b463b4992b721a1814fdf816f19fae28bfda3d8 (from https://pypi.org/simple/sequana/), version: 0.1.17.1 2021-04-20T17:10:16,960 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz#sha256=a46bca6bd4d4a615854901b845161866be8de61c63bb8fd8aa87332bd999e2e6 (from https://pypi.org/simple/sequana/), version: 0.1.18 2021-04-20T17:10:16,960 Found link https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz#sha256=675770bba7d1a1164c11c1f2a9a8dc72c93130c7485a051dbcf00dc702f77936 (from https://pypi.org/simple/sequana/), version: 0.1.19 2021-04-20T17:10:16,961 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz#sha256=36ee03b785cf4fb00ceeb078aceb385f40322a81021ac46b0c16ce0d8dc1d51f (from https://pypi.org/simple/sequana/), version: 0.1.20 2021-04-20T17:10:16,961 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz#sha256=6ffb487609d0db8acb213e53407c3c1045158db0d9d253985ddae334183aea0f (from https://pypi.org/simple/sequana/), version: 0.1.21 2021-04-20T17:10:16,961 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz#sha256=848e146c90a9f1d01f918a5f3d55eee8adc69510eee25276a18bd11dd4d9ed82 (from https://pypi.org/simple/sequana/), version: 0.2.0 2021-04-20T17:10:16,962 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz#sha256=75a552ec790be9cdaf519d3a5fa695312dccf83f4125770e285e5ecf2e56124c (from https://pypi.org/simple/sequana/), version: 0.2.1 2021-04-20T17:10:16,962 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz#sha256=ddb28bcfe2d6f7269c177327e57468c44a61bd68a88184d27540ea8a5110049b (from https://pypi.org/simple/sequana/), version: 0.3.0 2021-04-20T17:10:16,962 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz#sha256=a753ec894449535bb537e1654ba80584b1c9bd0aaecc9eefea3a43c211755e4f (from https://pypi.org/simple/sequana/), version: 0.4.0 2021-04-20T17:10:16,962 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz#sha256=4e722da0054e8c5bdc71f63f8214f9c58857fe0233b4fbe561708df31f078671 (from https://pypi.org/simple/sequana/), version: 0.4.1 2021-04-20T17:10:16,963 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz#sha256=3b5da1b07bb39574c719b9286973ae0668f3a58bb53841df91d6e5c6106e6209 (from https://pypi.org/simple/sequana/), version: 0.4.2 2021-04-20T17:10:16,963 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz#sha256=d4c6291836d5464535422e708c872f527c282b57a579c0c07e75ebeda12514b2 (from https://pypi.org/simple/sequana/), version: 0.5.0 2021-04-20T17:10:16,963 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz#sha256=550aa7eaf17f19ebf5adcd96b7e1d1abf6b35b0a92bf91de5526e5dca591fb5a (from https://pypi.org/simple/sequana/), version: 0.5.1 2021-04-20T17:10:16,964 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz#sha256=fecdd89470ddcef1330f48a6a07af09340cdc73e23935a95921265fe1927b467 (from https://pypi.org/simple/sequana/), version: 0.5.2 2021-04-20T17:10:16,964 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz#sha256=6a1ce240bd11285e6033282e648509efdb6d6ed113242e8749275617a6d13f8a (from https://pypi.org/simple/sequana/), version: 0.6.0 2021-04-20T17:10:16,964 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz#sha256=5d55fbe016b5c11e4eb505d25706f579d50b0460dfb518d9770a3918e2cd1ba9 (from https://pypi.org/simple/sequana/), version: 0.6.1 2021-04-20T17:10:16,964 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz#sha256=d10d26f7dec1a0b58f7d383c07d110ff78e1d1b9848d12b6a8313b93730e4577 (from https://pypi.org/simple/sequana/), version: 0.6.2 2021-04-20T17:10:16,965 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz#sha256=5fbdba3e7f5d45fb3ba60ddf74ac7f23959f981c5685a9915db27943ef2ef789 (from https://pypi.org/simple/sequana/), version: 0.6.3 2021-04-20T17:10:16,965 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz#sha256=cdde5470cb569d918526c7ad35b2972ac6fd231f1004200d44d7e15c93070be7 (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2021-04-20T17:10:16,965 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz#sha256=3bba760223d4116e3b4376dc0017e305d5ce8ee2192a5ee069391e8feabf284c (from https://pypi.org/simple/sequana/), version: 0.6.4 2021-04-20T17:10:16,966 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz#sha256=7eee9e748a4668a115eff49b989ee4c1fe5a52ad73eed00e24013d4a7b623407 (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 2021-04-20T17:10:16,966 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz#sha256=79ae56447befbad5ac383d957d88c8163a5955b44c47c607cd1c8e80b34cb549 (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 2021-04-20T17:10:16,966 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz#sha256=1aeab4823a6e62fdd526889e00e1d548a70e2b7bee4bf6a1ed76d6d8917fb1a2 (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 2021-04-20T17:10:16,966 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz#sha256=48be98668a53eca7fed648badafee73df13bcc7850c9202dcebfc0e327e6e813 (from https://pypi.org/simple/sequana/), version: 0.7.0 2021-04-20T17:10:16,967 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz#sha256=891e9a27fd992a9713de2e3afac9b4c8042d492703be65e1ae2b0ab098e275d6 (from https://pypi.org/simple/sequana/), version: 0.7.1 2021-04-20T17:10:16,967 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz#sha256=c538faf3e9dcfe5546301f172aa0145133c241b638aa0e43ca816c1743df8f20 (from https://pypi.org/simple/sequana/), version: 0.8.0 2021-04-20T17:10:16,967 Found link https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz#sha256=bd00660d1cb8886dd79b9460742fb62d29f39a4174094bc0399694834b2612cc (from https://pypi.org/simple/sequana/), version: 0.8.1 2021-04-20T17:10:16,968 Found link https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz#sha256=11c51f29d0d696451896fc56e940e059d191b6f17616776e08eb5b1c5ac5dda5 (from https://pypi.org/simple/sequana/), version: 0.8.2 2021-04-20T17:10:16,968 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz#sha256=4c47176589613a57227e742b9f31144f6714dad53078708baa4a3d1ea3a16994 (from https://pypi.org/simple/sequana/), version: 0.8.3 2021-04-20T17:10:16,968 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz#sha256=a11baec596d779f399512d3fe853ecdd582a16691880c495509d34d8cc66e2e7 (from https://pypi.org/simple/sequana/), version: 0.8.4 2021-04-20T17:10:16,968 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz#sha256=a1c0b4f766b774380d74c90cc4af7b6c222a2d1630c0be4a906fff8d796ffe08 (from https://pypi.org/simple/sequana/), version: 0.8.5 2021-04-20T17:10:16,969 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz#sha256=fa651ddd8a29046d6e5aec081ad30b8b0469b8e81fb2a59cf4d8bb20c4fe5a2f (from https://pypi.org/simple/sequana/), version: 0.8.6 2021-04-20T17:10:16,969 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 (from https://pypi.org/simple/sequana/), version: 0.9.0 2021-04-20T17:10:16,969 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2021-04-20T17:10:16,970 Found link https://files.pythonhosted.org/packages/fe/dd/8b02961ce903e04c2ff8473d2d10c7ccd524bf8b5db8e01215ea51131ffc/sequana-0.9.2.tar.gz#sha256=915e3d3041885d36011d38b94f06dd9cd8385896b6b4aabdc58c3556069a9226 (from https://pypi.org/simple/sequana/), version: 0.9.2 2021-04-20T17:10:16,970 Found link https://files.pythonhosted.org/packages/fe/62/342b160ea5c49f017c547e041c57af1e04567ec19caf38700096ae5ca778/sequana-0.9.3.tar.gz#sha256=00ebb6a68e2a7379ec377565112228351a611d60971d121f18471634eb17266c (from https://pypi.org/simple/sequana/), version: 0.9.3 2021-04-20T17:10:16,970 Found link https://files.pythonhosted.org/packages/de/c1/925f217661dd86c1e51490fd8f4c061033b7152ff1d5d26dd3178437724e/sequana-0.9.4.tar.gz#sha256=047f1a2664a6882999dfe275b42dc806fa762370c50b61fd8d226eae535a44c2 (from https://pypi.org/simple/sequana/), version: 0.9.4 2021-04-20T17:10:16,970 Found link https://files.pythonhosted.org/packages/3d/30/46988e24c359479d4808b277c5c9230371b5f0f7d022ced48404ca795e82/sequana-0.9.5.tar.gz#sha256=520b319a2b7ad5eca77d7c6d3acef135fb0015560efaf8bd6fa40f2caccbbfff (from https://pypi.org/simple/sequana/), version: 0.9.5 2021-04-20T17:10:16,971 Found link https://files.pythonhosted.org/packages/2f/fc/f32fabca2937e7213b16a9feab8b536a76a67278ee5643ba78d628830457/sequana-0.9.6.tar.gz#sha256=879071711f7e9c0537b7f16614caa92e46c3683db1965070068876b0d1fb389c (from https://pypi.org/simple/sequana/), version: 0.9.6 2021-04-20T17:10:16,971 Found link https://files.pythonhosted.org/packages/ff/75/e1ef2e3648a089e98fe75ca07d35e6ef884b3b591a0600ebfe29e7bff534/sequana-0.9.7.tar.gz#sha256=efe71e3d1b694f6ce86c63cadd90a65bb48f923110e43e79a32bb34a04288017 (from https://pypi.org/simple/sequana/), version: 0.9.7 2021-04-20T17:10:16,971 Found link https://files.pythonhosted.org/packages/02/b0/78c5e898532879ec045c7a10f8482966ae854d9ced08d75fd21679457c59/sequana-0.9.8.tar.gz#sha256=b9117d270539742cfbbd31084e20b38f856a49621a42fdc515e833b16a43787c (from https://pypi.org/simple/sequana/), version: 0.9.8 2021-04-20T17:10:16,971 Found link https://files.pythonhosted.org/packages/9c/f6/5b6a3b0b8ab58aaf058070ad05ddc2b56a47a070278c8d0751f873cd410e/sequana-0.10.0.tar.gz#sha256=611d22d8288086877f7795e1093775ac04eebfd5eb02d51aba07cfb8ee6be2b6 (from https://pypi.org/simple/sequana/), version: 0.10.0 2021-04-20T17:10:16,972 Found link https://files.pythonhosted.org/packages/c9/1b/f84aa4bd2433debe7755a13578e557548b2f82eaffd75eebfd021612d8e0/sequana-0.11.0.tar.gz#sha256=70326f92d0095d016f36d3699ccfd1572eee35f325a3586f755df0553a3dc4f0 (from https://pypi.org/simple/sequana/), version: 0.11.0 2021-04-20T17:10:16,972 Found link https://files.pythonhosted.org/packages/e3/80/c03812cefb6d07bcb93777f3993270291c63424dd3aa86245f440d7a7915/sequana-0.11.1.tar.gz#sha256=f281872d6df4c3cbd0f2b6ecec337e1d37737fa6a519d1bce94672fb6b510d98 (from https://pypi.org/simple/sequana/), version: 0.11.1 2021-04-20T17:10:17,021 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2021-04-20T17:10:17,037 Collecting sequana==0.11.1 2021-04-20T17:10:17,039 Created temporary directory: /tmp/pip-unpack-x7hr4081 2021-04-20T17:10:17,041 Getting credentials from keyring for files.pythonhosted.org 2021-04-20T17:10:21,413 Downloading sequana-0.11.1.tar.gz (18.2 MB) 2021-04-20T17:10:25,938 Added sequana==0.11.1 from https://files.pythonhosted.org/packages/e3/80/c03812cefb6d07bcb93777f3993270291c63424dd3aa86245f440d7a7915/sequana-0.11.1.tar.gz#sha256=f281872d6df4c3cbd0f2b6ecec337e1d37737fa6a519d1bce94672fb6b510d98 to build tracker '/tmp/pip-req-tracker-w79r5c1t' 2021-04-20T17:10:25,939 Running setup.py (path:/tmp/pip-wheel-ptz9e9bz/sequana_337e8c9690bc4cef876977a74df12e21/setup.py) egg_info for package sequana 2021-04-20T17:10:25,940 Created temporary directory: /tmp/pip-pip-egg-info-90f3f0_d 2021-04-20T17:10:25,941 Running command python setup.py egg_info 2021-04-20T17:10:27,167 running egg_info 2021-04-20T17:10:27,170 creating /tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info 2021-04-20T17:10:27,171 writing /tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/PKG-INFO 2021-04-20T17:10:27,174 writing dependency_links to /tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/dependency_links.txt 2021-04-20T17:10:27,177 writing entry points to /tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/entry_points.txt 2021-04-20T17:10:27,178 writing requirements to /tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/requires.txt 2021-04-20T17:10:27,179 writing top-level names to /tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/top_level.txt 2021-04-20T17:10:27,181 writing manifest file '/tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/SOURCES.txt' 2021-04-20T17:10:27,858 reading manifest file '/tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/SOURCES.txt' 2021-04-20T17:10:27,860 reading manifest template 'MANIFEST.in' 2021-04-20T17:10:27,864 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-04-20T17:10:27,866 warning: no previously-included files matching '*pyc' found under directory '*' 2021-04-20T17:10:28,369 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-04-20T17:10:28,370 warning: no previously-included files matching '*' found under directory 'test' 2021-04-20T17:10:28,372 warning: no previously-included files found matching 'sequana/rm2.py' 2021-04-20T17:10:28,403 writing manifest file '/tmp/pip-pip-egg-info-90f3f0_d/sequana.egg-info/SOURCES.txt' 2021-04-20T17:10:28,464 Source in /tmp/pip-wheel-ptz9e9bz/sequana_337e8c9690bc4cef876977a74df12e21 has version 0.11.1, which satisfies requirement sequana==0.11.1 from https://files.pythonhosted.org/packages/e3/80/c03812cefb6d07bcb93777f3993270291c63424dd3aa86245f440d7a7915/sequana-0.11.1.tar.gz#sha256=f281872d6df4c3cbd0f2b6ecec337e1d37737fa6a519d1bce94672fb6b510d98 2021-04-20T17:10:28,465 Removed sequana==0.11.1 from https://files.pythonhosted.org/packages/e3/80/c03812cefb6d07bcb93777f3993270291c63424dd3aa86245f440d7a7915/sequana-0.11.1.tar.gz#sha256=f281872d6df4c3cbd0f2b6ecec337e1d37737fa6a519d1bce94672fb6b510d98 from build tracker '/tmp/pip-req-tracker-w79r5c1t' 2021-04-20T17:10:28,471 Created temporary directory: /tmp/pip-unpack-n_awubkk 2021-04-20T17:10:28,471 Building wheels for collected packages: sequana 2021-04-20T17:10:28,477 Created temporary directory: /tmp/pip-wheel-ekxoe7sf 2021-04-20T17:10:28,477 Building wheel for sequana (setup.py): started 2021-04-20T17:10:28,478 Destination directory: /tmp/pip-wheel-ekxoe7sf 2021-04-20T17:10:28,478 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ptz9e9bz/sequana_337e8c9690bc4cef876977a74df12e21/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ptz9e9bz/sequana_337e8c9690bc4cef876977a74df12e21/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ekxoe7sf 2021-04-20T17:10:29,613 running bdist_wheel 2021-04-20T17:10:29,621 running build 2021-04-20T17:10:29,621 running build_py 2021-04-20T17:10:29,756 creating build 2021-04-20T17:10:29,757 creating build/lib 2021-04-20T17:10:29,757 creating build/lib/sequana 2021-04-20T17:10:29,759 copying sequana/cigar.py -> build/lib/sequana 2021-04-20T17:10:29,761 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2021-04-20T17:10:29,763 copying sequana/running_median.py -> build/lib/sequana 2021-04-20T17:10:29,765 copying sequana/criteria.py -> build/lib/sequana 2021-04-20T17:10:29,768 copying sequana/mh.py -> build/lib/sequana 2021-04-20T17:10:29,770 copying sequana/sniffer.py -> build/lib/sequana 2021-04-20T17:10:29,772 copying sequana/demultiplex.py -> build/lib/sequana 2021-04-20T17:10:29,774 copying sequana/misc.py -> build/lib/sequana 2021-04-20T17:10:29,776 copying sequana/__init__.py -> build/lib/sequana 2021-04-20T17:10:29,778 copying sequana/krona.py -> build/lib/sequana 2021-04-20T17:10:29,780 copying sequana/fastqc.py -> build/lib/sequana 2021-04-20T17:10:29,783 copying sequana/pipelines_common.py -> build/lib/sequana 2021-04-20T17:10:29,786 copying sequana/featurecounts.py -> build/lib/sequana 2021-04-20T17:10:29,788 copying sequana/compare.py -> build/lib/sequana 2021-04-20T17:10:29,791 copying sequana/kraken.py -> build/lib/sequana 2021-04-20T17:10:29,796 copying sequana/adapters.py -> build/lib/sequana 2021-04-20T17:10:29,799 copying sequana/salmon.py -> build/lib/sequana 2021-04-20T17:10:29,802 copying sequana/bamtools.py -> build/lib/sequana 2021-04-20T17:10:29,806 copying sequana/kraken_builder.py -> build/lib/sequana 2021-04-20T17:10:29,809 copying sequana/protein.py -> build/lib/sequana 2021-04-20T17:10:29,811 copying sequana/iotools.py -> build/lib/sequana 2021-04-20T17:10:29,813 copying sequana/stats.py -> build/lib/sequana 2021-04-20T17:10:29,815 copying sequana/itol.py -> build/lib/sequana 2021-04-20T17:10:29,817 copying sequana/fastq.py -> build/lib/sequana 2021-04-20T17:10:29,820 copying sequana/enrichment.py -> build/lib/sequana 2021-04-20T17:10:29,824 copying sequana/summary.py -> build/lib/sequana 2021-04-20T17:10:29,826 copying sequana/find_motif.py -> build/lib/sequana 2021-04-20T17:10:29,829 copying sequana/rnadiff.py -> build/lib/sequana 2021-04-20T17:10:29,833 copying sequana/snaketools.py -> build/lib/sequana 2021-04-20T17:10:29,838 copying sequana/genbank.py -> build/lib/sequana 2021-04-20T17:10:29,840 copying sequana/databases.py -> build/lib/sequana 2021-04-20T17:10:29,843 copying sequana/contigs.py -> build/lib/sequana 2021-04-20T17:10:29,846 copying sequana/laa.py -> build/lib/sequana 2021-04-20T17:10:29,849 copying sequana/vcf_filter.py -> build/lib/sequana 2021-04-20T17:10:29,852 copying sequana/phred.py -> build/lib/sequana 2021-04-20T17:10:29,854 copying sequana/canu_scanner.py -> build/lib/sequana 2021-04-20T17:10:29,857 copying sequana/gff3.py -> build/lib/sequana 2021-04-20T17:10:29,860 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2021-04-20T17:10:29,863 copying sequana/lazy.py -> build/lib/sequana 2021-04-20T17:10:29,865 copying sequana/datatools.py -> build/lib/sequana 2021-04-20T17:10:29,867 copying sequana/assembly.py -> build/lib/sequana 2021-04-20T17:10:29,870 copying sequana/isoseq.py -> build/lib/sequana 2021-04-20T17:10:29,873 copying sequana/kmer.py -> build/lib/sequana 2021-04-20T17:10:29,875 copying sequana/sequence.py -> build/lib/sequana 2021-04-20T17:10:29,879 copying sequana/chipseq.py -> build/lib/sequana 2021-04-20T17:10:29,882 copying sequana/bed.py -> build/lib/sequana 2021-04-20T17:10:29,885 copying sequana/iem.py -> build/lib/sequana 2021-04-20T17:10:29,887 copying sequana/jsontool.py -> build/lib/sequana 2021-04-20T17:10:29,890 copying sequana/annotations.py -> build/lib/sequana 2021-04-20T17:10:29,892 copying sequana/busco.py -> build/lib/sequana 2021-04-20T17:10:29,895 copying sequana/mixture.py -> build/lib/sequana 2021-04-20T17:10:29,898 copying sequana/mgi.py -> build/lib/sequana 2021-04-20T17:10:29,900 copying sequana/gtf.py -> build/lib/sequana 2021-04-20T17:10:29,902 copying sequana/bedtools.py -> build/lib/sequana 2021-04-20T17:10:29,907 copying sequana/cpg_islands.py -> build/lib/sequana 2021-04-20T17:10:29,909 copying sequana/lazyimports.py -> build/lib/sequana 2021-04-20T17:10:29,912 copying sequana/snpeff.py -> build/lib/sequana 2021-04-20T17:10:29,914 copying sequana/vcftools.py -> build/lib/sequana 2021-04-20T17:10:29,917 copying sequana/trf.py -> build/lib/sequana 2021-04-20T17:10:29,919 copying sequana/fasta.py -> build/lib/sequana 2021-04-20T17:10:29,922 copying sequana/tools.py -> build/lib/sequana 2021-04-20T17:10:29,925 copying sequana/errors.py -> build/lib/sequana 2021-04-20T17:10:29,927 copying sequana/iuapc.py -> build/lib/sequana 2021-04-20T17:10:29,930 copying sequana/cnv.py -> build/lib/sequana 2021-04-20T17:10:29,932 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2021-04-20T17:10:29,935 copying sequana/taxonomy.py -> build/lib/sequana 2021-04-20T17:10:29,938 copying sequana/kegg.py -> build/lib/sequana 2021-04-20T17:10:29,941 copying sequana/vst.py -> build/lib/sequana 2021-04-20T17:10:29,943 copying sequana/coverage.py -> build/lib/sequana 2021-04-20T17:10:29,946 copying sequana/pacbio.py -> build/lib/sequana 2021-04-20T17:10:29,950 creating build/lib/sequana/resources 2021-04-20T17:10:29,951 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2021-04-20T17:10:29,954 creating build/lib/sequana/pipelines 2021-04-20T17:10:29,955 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2021-04-20T17:10:29,958 creating build/lib/sequana/sphinxext 2021-04-20T17:10:29,959 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2021-04-20T17:10:29,961 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2021-04-20T17:10:29,963 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2021-04-20T17:10:29,967 creating build/lib/sequana/multiqc 2021-04-20T17:10:29,968 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,971 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,973 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,976 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,979 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,981 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,983 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,986 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,989 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,992 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,995 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2021-04-20T17:10:29,998 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2021-04-20T17:10:30,002 creating build/lib/sequana/gui 2021-04-20T17:10:30,004 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2021-04-20T17:10:30,006 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2021-04-20T17:10:30,008 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2021-04-20T17:10:30,012 copying sequana/gui/browser.py -> build/lib/sequana/gui 2021-04-20T17:10:30,014 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2021-04-20T17:10:30,017 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2021-04-20T17:10:30,022 copying sequana/gui/messages.py -> build/lib/sequana/gui 2021-04-20T17:10:30,024 copying sequana/gui/about.py -> build/lib/sequana/gui 2021-04-20T17:10:30,026 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2021-04-20T17:10:30,030 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2021-04-20T17:10:30,033 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2021-04-20T17:10:30,036 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2021-04-20T17:10:30,038 copying sequana/gui/help.py -> build/lib/sequana/gui 2021-04-20T17:10:30,041 copying sequana/gui/tools.py -> build/lib/sequana/gui 2021-04-20T17:10:30,043 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2021-04-20T17:10:30,046 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2021-04-20T17:10:30,050 creating build/lib/sequana/scripts 2021-04-20T17:10:30,051 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,054 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,056 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,059 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,062 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,064 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,067 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,069 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,072 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,075 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,077 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,080 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,083 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,086 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2021-04-20T17:10:30,090 creating build/lib/sequana/utils 2021-04-20T17:10:30,091 copying sequana/utils/config.py -> build/lib/sequana/utils 2021-04-20T17:10:30,094 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2021-04-20T17:10:30,096 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2021-04-20T17:10:30,099 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2021-04-20T17:10:30,102 copying sequana/utils/tree.py -> build/lib/sequana/utils 2021-04-20T17:10:30,107 creating build/lib/sequana/plots 2021-04-20T17:10:30,108 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2021-04-20T17:10:30,111 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2021-04-20T17:10:30,115 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2021-04-20T17:10:30,121 creating build/lib/sequana/viz 2021-04-20T17:10:30,122 copying sequana/viz/core.py -> build/lib/sequana/viz 2021-04-20T17:10:30,125 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2021-04-20T17:10:30,128 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2021-04-20T17:10:30,131 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2021-04-20T17:10:30,135 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2021-04-20T17:10:30,138 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2021-04-20T17:10:30,142 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2021-04-20T17:10:30,145 copying sequana/viz/mds.py -> build/lib/sequana/viz 2021-04-20T17:10:30,148 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2021-04-20T17:10:30,150 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2021-04-20T17:10:30,153 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2021-04-20T17:10:30,155 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2021-04-20T17:10:30,158 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2021-04-20T17:10:30,161 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2021-04-20T17:10:30,163 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2021-04-20T17:10:30,166 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2021-04-20T17:10:30,170 copying sequana/viz/anova.py -> build/lib/sequana/viz 2021-04-20T17:10:30,173 copying sequana/viz/venn.py -> build/lib/sequana/viz 2021-04-20T17:10:30,175 copying sequana/viz/pca.py -> build/lib/sequana/viz 2021-04-20T17:10:30,179 creating build/lib/sequana/rules 2021-04-20T17:10:30,180 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2021-04-20T17:10:30,185 creating build/lib/sequana/modules_report 2021-04-20T17:10:30,186 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,189 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,192 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,195 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,196 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,198 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,201 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,203 copying sequana/modules_report/enrichment.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,206 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,209 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,212 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,215 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,218 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,220 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,223 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,225 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,228 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,231 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,234 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2021-04-20T17:10:30,239 creating build/lib/sequana/resources/testing 2021-04-20T17:10:30,240 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2021-04-20T17:10:30,244 creating build/lib/sequana/resources/data 2021-04-20T17:10:30,245 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2021-04-20T17:10:30,248 creating build/lib/sequana/resources/css 2021-04-20T17:10:30,250 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2021-04-20T17:10:30,253 creating build/lib/sequana/resources/busco 2021-04-20T17:10:30,254 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2021-04-20T17:10:30,257 creating build/lib/sequana/resources/images 2021-04-20T17:10:30,258 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2021-04-20T17:10:30,260 creating build/lib/sequana/resources/js 2021-04-20T17:10:30,262 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2021-04-20T17:10:30,264 creating build/lib/sequana/resources/canvas 2021-04-20T17:10:30,265 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2021-04-20T17:10:30,268 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2021-04-20T17:10:30,271 creating build/lib/sequana/resources/snpeff 2021-04-20T17:10:30,272 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2021-04-20T17:10:30,275 creating build/lib/sequana/resources/templates 2021-04-20T17:10:30,276 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2021-04-20T17:10:30,279 creating build/lib/sequana/resources/testing/enrichment 2021-04-20T17:10:30,280 copying sequana/resources/testing/enrichment/__init__.py -> build/lib/sequana/resources/testing/enrichment 2021-04-20T17:10:30,282 creating build/lib/sequana/resources/testing/rnadiff 2021-04-20T17:10:30,284 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2021-04-20T17:10:30,286 creating build/lib/sequana/resources/testing/featurecounts 2021-04-20T17:10:30,288 copying sequana/resources/testing/featurecounts/__init__.py -> build/lib/sequana/resources/testing/featurecounts 2021-04-20T17:10:30,291 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-04-20T17:10:30,292 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/__init__.py -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-04-20T17:10:30,294 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:30,296 copying sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/__init__.py -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:30,299 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:30,300 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/__init__.py -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:30,303 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-04-20T17:10:30,304 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/__init__.py -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-04-20T17:10:30,306 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2021-04-20T17:10:30,308 copying sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0 2021-04-20T17:10:30,311 creating build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:30,312 copying sequana/resources/testing/featurecounts/featurecounts_ex1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:30,315 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-04-20T17:10:30,316 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-04-20T17:10:30,318 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-04-20T17:10:30,320 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-04-20T17:10:30,322 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-04-20T17:10:30,323 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-04-20T17:10:30,326 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-04-20T17:10:30,328 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-04-20T17:10:30,331 creating build/lib/sequana/resources/data/adapters 2021-04-20T17:10:30,332 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:30,335 creating build/lib/sequana/rules/idr 2021-04-20T17:10:30,336 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2021-04-20T17:10:30,339 creating build/lib/sequana/rules/picard-tools 2021-04-20T17:10:30,340 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2021-04-20T17:10:30,343 creating build/lib/sequana/rules/Pacbio 2021-04-20T17:10:30,344 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2021-04-20T17:10:30,347 creating build/lib/sequana/rules/Variant_caller 2021-04-20T17:10:30,348 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2021-04-20T17:10:30,350 creating build/lib/sequana/rules/Adapters 2021-04-20T17:10:30,351 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2021-04-20T17:10:30,354 creating build/lib/sequana/rules/sambamba 2021-04-20T17:10:30,355 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2021-04-20T17:10:30,358 creating build/lib/sequana/rules/SnpEff 2021-04-20T17:10:30,359 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2021-04-20T17:10:30,362 creating build/lib/sequana/rules/deeptools 2021-04-20T17:10:30,363 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2021-04-20T17:10:30,366 creating build/lib/sequana/rules/Utils 2021-04-20T17:10:30,368 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2021-04-20T17:10:30,371 creating build/lib/sequana/rules/codecs 2021-04-20T17:10:30,372 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2021-04-20T17:10:30,374 creating build/lib/sequana/rules/Assembly 2021-04-20T17:10:30,375 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2021-04-20T17:10:30,804 creating build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,805 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,808 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,810 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,813 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,817 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,820 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,823 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2021-04-20T17:10:30,826 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2021-04-20T17:10:30,829 copying sequana/rules/README.rst -> build/lib/sequana/rules 2021-04-20T17:10:30,832 creating build/lib/sequana/rules/bowtie2_index 2021-04-20T17:10:30,833 copying sequana/rules/bowtie2_index/bowtie2_index.rules -> build/lib/sequana/rules/bowtie2_index 2021-04-20T17:10:30,837 creating build/lib/sequana/rules/prokka 2021-04-20T17:10:30,838 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2021-04-20T17:10:30,841 creating build/lib/sequana/rules/igvtools 2021-04-20T17:10:30,843 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2021-04-20T17:10:30,846 creating build/lib/sequana/rules/spikes_counting 2021-04-20T17:10:30,847 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2021-04-20T17:10:30,851 creating build/lib/sequana/rules/extract_fasta_from_bed 2021-04-20T17:10:30,852 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2021-04-20T17:10:30,855 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-04-20T17:10:30,856 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2021-04-20T17:10:30,860 creating build/lib/sequana/rules/preSARTools 2021-04-20T17:10:30,861 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2021-04-20T17:10:30,864 creating build/lib/sequana/rules/samtools_sort 2021-04-20T17:10:30,865 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2021-04-20T17:10:30,868 creating build/lib/sequana/rules/multiqc 2021-04-20T17:10:30,870 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2021-04-20T17:10:30,873 creating build/lib/sequana/rules/bwa_bam_to_fastq 2021-04-20T17:10:30,874 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2021-04-20T17:10:30,877 creating build/lib/sequana/rules/feature_counts_dynamic 2021-04-20T17:10:30,879 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2021-04-20T17:10:30,882 creating build/lib/sequana/rules/pacbio_quality 2021-04-20T17:10:30,883 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2021-04-20T17:10:30,886 creating build/lib/sequana/rules/dag 2021-04-20T17:10:30,887 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2021-04-20T17:10:30,890 creating build/lib/sequana/rules/bwa_mem_dynamic 2021-04-20T17:10:30,892 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2021-04-20T17:10:30,895 creating build/lib/sequana/rules/star_mapping 2021-04-20T17:10:30,896 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2021-04-20T17:10:30,899 creating build/lib/sequana/rules/samtools_depth 2021-04-20T17:10:30,901 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2021-04-20T17:10:30,904 creating build/lib/sequana/rules/salmon_mapping 2021-04-20T17:10:30,905 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2021-04-20T17:10:30,908 creating build/lib/sequana/rules/fastq_screen_report 2021-04-20T17:10:30,909 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2021-04-20T17:10:30,913 creating build/lib/sequana/rules/falco_dynamic 2021-04-20T17:10:30,914 copying sequana/rules/falco_dynamic/falco_dynamic.rules -> build/lib/sequana/rules/falco_dynamic 2021-04-20T17:10:30,917 creating build/lib/sequana/rules/fastqc_dynamic 2021-04-20T17:10:30,918 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2021-04-20T17:10:30,921 creating build/lib/sequana/rules/bam_analysis 2021-04-20T17:10:30,922 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2021-04-20T17:10:30,925 creating build/lib/sequana/rules/bam_quality_filter 2021-04-20T17:10:30,926 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2021-04-20T17:10:30,930 creating build/lib/sequana/rules/bamCoverage 2021-04-20T17:10:30,931 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2021-04-20T17:10:30,934 creating build/lib/sequana/rules/sequana_coverage 2021-04-20T17:10:30,935 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2021-04-20T17:10:30,938 creating build/lib/sequana/rules/digital_normalisation 2021-04-20T17:10:30,939 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2021-04-20T17:10:30,942 creating build/lib/sequana/rules/remove_blacklist 2021-04-20T17:10:30,943 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2021-04-20T17:10:30,947 creating build/lib/sequana/rules/spp 2021-04-20T17:10:30,948 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2021-04-20T17:10:30,951 creating build/lib/sequana/rules/indel_realigner 2021-04-20T17:10:30,952 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2021-04-20T17:10:30,955 creating build/lib/sequana/rules/fastq_sampling 2021-04-20T17:10:30,956 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2021-04-20T17:10:30,960 creating build/lib/sequana/rules/salmon_index 2021-04-20T17:10:30,961 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2021-04-20T17:10:30,964 creating build/lib/sequana/rules/bwa_index 2021-04-20T17:10:30,965 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2021-04-20T17:10:30,968 creating build/lib/sequana/rules/rnaseqc 2021-04-20T17:10:30,969 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2021-04-20T17:10:30,972 creating build/lib/sequana/rules/rulegraph 2021-04-20T17:10:30,973 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2021-04-20T17:10:30,976 creating build/lib/sequana/rules/star_index 2021-04-20T17:10:30,977 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2021-04-20T17:10:30,980 creating build/lib/sequana/rules/conda 2021-04-20T17:10:30,981 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2021-04-20T17:10:30,984 creating build/lib/sequana/rules/feature_counts 2021-04-20T17:10:30,985 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2021-04-20T17:10:30,988 creating build/lib/sequana/rules/bowtie1_index_dynamic 2021-04-20T17:10:30,989 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2021-04-20T17:10:30,992 creating build/lib/sequana/rules/fastp 2021-04-20T17:10:30,993 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2021-04-20T17:10:30,996 creating build/lib/sequana/rules/SARTools 2021-04-20T17:10:30,997 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2021-04-20T17:10:31,000 creating build/lib/sequana/rules/DupRadar 2021-04-20T17:10:31,001 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2021-04-20T17:10:31,004 creating build/lib/sequana/rules/tophat_mapping 2021-04-20T17:10:31,005 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2021-04-20T17:10:31,008 creating build/lib/sequana/rules/chipuanar 2021-04-20T17:10:31,009 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2021-04-20T17:10:31,012 creating build/lib/sequana/rules/miRNA_count_dynamic 2021-04-20T17:10:31,013 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2021-04-20T17:10:31,016 creating build/lib/sequana/rules/fastq_stats_dynamic 2021-04-20T17:10:31,017 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2021-04-20T17:10:31,020 creating build/lib/sequana/rules/mapping_analysis 2021-04-20T17:10:31,021 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2021-04-20T17:10:31,024 creating build/lib/sequana/rules/fastq_screen 2021-04-20T17:10:31,025 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2021-04-20T17:10:31,027 creating build/lib/sequana/rules/multiqc2 2021-04-20T17:10:31,029 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2021-04-20T17:10:31,031 creating build/lib/sequana/rules/bed_to_gff 2021-04-20T17:10:31,032 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2021-04-20T17:10:31,035 creating build/lib/sequana/rules/summary_pipeline 2021-04-20T17:10:31,036 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2021-04-20T17:10:31,039 creating build/lib/sequana/rules/macs3_dynamic 2021-04-20T17:10:31,040 copying sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/lib/sequana/rules/macs3_dynamic 2021-04-20T17:10:31,043 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-04-20T17:10:31,044 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2021-04-20T17:10:31,047 creating build/lib/sequana/rules/bowtie2_index_dynamic 2021-04-20T17:10:31,048 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2021-04-20T17:10:31,051 creating build/lib/sequana/rules/revcomp_rule 2021-04-20T17:10:31,052 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2021-04-20T17:10:31,054 creating build/lib/sequana/rules/format_contigs 2021-04-20T17:10:31,055 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2021-04-20T17:10:31,059 creating build/lib/sequana/rules/quast 2021-04-20T17:10:31,060 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2021-04-20T17:10:31,063 creating build/lib/sequana/rules/copy_multiple_files 2021-04-20T17:10:31,064 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2021-04-20T17:10:31,066 creating build/lib/sequana/rules/idr/select_peaks 2021-04-20T17:10:31,067 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2021-04-20T17:10:31,070 creating build/lib/sequana/rules/idr/compute_idr 2021-04-20T17:10:31,071 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2021-04-20T17:10:31,074 creating build/lib/sequana/rules/idr/intersectionApproach 2021-04-20T17:10:31,075 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2021-04-20T17:10:31,078 creating build/lib/sequana/rules/idr/stats_peakCalling 2021-04-20T17:10:31,079 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2021-04-20T17:10:31,082 creating build/lib/sequana/rules/idr/union_peaks 2021-04-20T17:10:31,083 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2021-04-20T17:10:31,086 creating build/lib/sequana/rules/idr/metrics_peaks 2021-04-20T17:10:31,087 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2021-04-20T17:10:31,089 creating build/lib/sequana/rules/idr/preIDR_dynamic 2021-04-20T17:10:31,090 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2021-04-20T17:10:31,094 creating build/lib/sequana/rules/multiqc/2.0 2021-04-20T17:10:31,095 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2021-04-20T17:10:31,098 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-04-20T17:10:31,099 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-04-20T17:10:31,101 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-04-20T17:10:31,102 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2021-04-20T17:10:31,105 creating build/lib/sequana/rules/picard-tools/add_read_group 2021-04-20T17:10:31,106 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2021-04-20T17:10:31,109 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-04-20T17:10:31,110 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-04-20T17:10:31,112 creating build/lib/sequana/rules/picard-tools/reorderSam 2021-04-20T17:10:31,114 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2021-04-20T17:10:31,116 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-04-20T17:10:31,117 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-04-20T17:10:31,120 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-04-20T17:10:31,121 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2021-04-20T17:10:31,124 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-04-20T17:10:31,125 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-04-20T17:10:31,128 creating build/lib/sequana/rules/Variant_caller/freebayes 2021-04-20T17:10:31,129 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2021-04-20T17:10:31,131 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-04-20T17:10:31,132 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-04-20T17:10:31,135 creating build/lib/sequana/rules/Adapters/alien_trimmer 2021-04-20T17:10:31,136 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2021-04-20T17:10:31,139 creating build/lib/sequana/rules/Adapters/cutadapt 2021-04-20T17:10:31,140 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2021-04-20T17:10:31,143 creating build/lib/sequana/rules/Adapters/identify_adapters 2021-04-20T17:10:31,144 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2021-04-20T17:10:31,147 creating build/lib/sequana/rules/Adapters/adapter_removal 2021-04-20T17:10:31,148 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2021-04-20T17:10:31,151 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2021-04-20T17:10:31,152 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2021-04-20T17:10:31,155 creating build/lib/sequana/rules/sambamba/sambamba_filter 2021-04-20T17:10:31,156 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2021-04-20T17:10:31,159 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-04-20T17:10:31,160 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2021-04-20T17:10:31,163 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-04-20T17:10:31,164 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2021-04-20T17:10:31,168 creating build/lib/sequana/rules/deeptools/multiBamSummary 2021-04-20T17:10:31,169 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2021-04-20T17:10:31,172 creating build/lib/sequana/rules/deeptools/plotCoverage 2021-04-20T17:10:31,173 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2021-04-20T17:10:31,176 creating build/lib/sequana/rules/deeptools/plotCorrelation 2021-04-20T17:10:31,177 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2021-04-20T17:10:31,180 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-04-20T17:10:31,181 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2021-04-20T17:10:31,185 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-04-20T17:10:31,186 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-04-20T17:10:31,189 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2021-04-20T17:10:31,190 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2021-04-20T17:10:31,194 creating build/lib/sequana/rules/Utils/dynamic_copy 2021-04-20T17:10:31,195 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2021-04-20T17:10:31,198 creating build/lib/sequana/rules/codecs/fastq_to_gz 2021-04-20T17:10:31,199 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2021-04-20T17:10:31,203 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-04-20T17:10:31,204 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2021-04-20T17:10:31,207 creating build/lib/sequana/rules/codecs/gz_to_bz2 2021-04-20T17:10:31,209 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2021-04-20T17:10:31,212 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-04-20T17:10:31,213 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2021-04-20T17:10:31,216 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2021-04-20T17:10:31,218 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2021-04-20T17:10:31,221 creating build/lib/sequana/rules/codecs/gz_to_fastq 2021-04-20T17:10:31,222 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2021-04-20T17:10:31,225 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2021-04-20T17:10:31,227 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2021-04-20T17:10:31,230 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2021-04-20T17:10:31,231 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2021-04-20T17:10:31,234 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-04-20T17:10:31,235 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2021-04-20T17:10:31,239 creating build/lib/sequana/rules/codecs/bam_to_fasta 2021-04-20T17:10:31,240 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2021-04-20T17:10:31,243 creating build/lib/sequana/rules/codecs/bz2_to_gz 2021-04-20T17:10:31,244 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2021-04-20T17:10:31,248 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-04-20T17:10:31,249 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2021-04-20T17:10:31,252 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2021-04-20T17:10:31,253 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2021-04-20T17:10:31,256 creating build/lib/sequana/rules/kraken 2021-04-20T17:10:31,257 creating build/lib/sequana/rules/kraken/1.0 2021-04-20T17:10:31,259 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2021-04-20T17:10:31,262 creating build/lib/sequana/rules/kraken/1.1 2021-04-20T17:10:31,263 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2021-04-20T17:10:31,267 creating build/lib/sequana/rules/peak_calling 2021-04-20T17:10:31,267 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-04-20T17:10:31,269 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2021-04-20T17:10:31,272 creating build/lib/sequana/rules/Assembly/spades 2021-04-20T17:10:31,273 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2021-04-20T17:10:31,276 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2021-04-20T17:10:31,278 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2021-04-20T17:10:31,281 creating build/lib/sequana/rules/Assembly/busco 2021-04-20T17:10:31,282 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2021-04-20T17:10:31,285 creating build/lib/sequana/rules/Assembly/canu 2021-04-20T17:10:31,287 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2021-04-20T17:10:31,290 creating build/lib/sequana/rules/Assembly/busco_analysis 2021-04-20T17:10:31,291 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2021-04-20T17:10:31,294 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-04-20T17:10:31,295 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-04-20T17:10:31,297 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-04-20T17:10:31,300 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-04-20T17:10:31,302 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-04-20T17:10:31,305 creating build/lib/sequana/rules/SnpEff/snpeff 2021-04-20T17:10:31,305 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-04-20T17:10:31,307 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2021-04-20T17:10:31,311 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-04-20T17:10:31,313 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2021-04-20T17:10:31,316 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,319 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,323 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,327 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,330 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,334 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,337 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,340 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,343 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,347 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,350 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,354 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,360 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,363 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,367 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,370 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,374 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,377 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,381 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,384 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,387 copying sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,390 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,393 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,396 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,399 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,403 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,406 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,409 copying sequana/resources/testing/test_mgi.fqStat.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,414 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,417 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,420 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,422 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,426 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,429 copying sequana/resources/testing/test_trf1.dat -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,439 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,442 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,451 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,454 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,458 copying sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,461 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,464 copying sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,466 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,469 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,472 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,475 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,480 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,484 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,487 copying sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,489 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,492 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,500 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,502 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,505 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,508 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,520 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,523 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,526 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,539 copying sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,541 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,550 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,553 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,555 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,562 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,565 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,568 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,571 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,575 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,590 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,594 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,597 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,602 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,604 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,608 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,611 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,616 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,619 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,622 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,625 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,629 copying sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,631 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,636 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,642 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,645 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,649 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,663 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,666 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,668 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,671 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,675 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,679 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,682 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,688 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,691 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,694 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,711 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,714 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,718 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,730 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,732 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,735 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,738 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,741 copying sequana/resources/testing/test.bam.bai -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,744 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2021-04-20T17:10:31,750 copying sequana/resources/testing/enrichment/ecoli_down_gene.csv -> build/lib/sequana/resources/testing/enrichment 2021-04-20T17:10:31,758 copying sequana/resources/testing/enrichment/ecoli_up_gene.csv -> build/lib/sequana/resources/testing/enrichment 2021-04-20T17:10:31,765 copying sequana/resources/testing/enrichment/ecoli_all_gene.csv -> build/lib/sequana/resources/testing/enrichment 2021-04-20T17:10:31,783 copying sequana/resources/testing/rnadiff/rnadiff_salmon.csv -> build/lib/sequana/resources/testing/rnadiff 2021-04-20T17:10:31,797 copying sequana/resources/testing/rnadiff/rnadiff_bowtie.csv -> build/lib/sequana/resources/testing/rnadiff 2021-04-20T17:10:31,809 copying sequana/resources/testing/rnadiff/README.txt -> build/lib/sequana/resources/testing/rnadiff 2021-04-20T17:10:31,812 copying sequana/resources/testing/rnadiff/design_twocond.csv -> build/lib/sequana/resources/testing/rnadiff 2021-04-20T17:10:31,815 copying sequana/resources/testing/rnadiff/design.csv -> build/lib/sequana/resources/testing/rnadiff 2021-04-20T17:10:31,818 copying sequana/resources/testing/featurecounts/README.txt -> build/lib/sequana/resources/testing/featurecounts 2021-04-20T17:10:31,821 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,822 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Complemented_csrA_vs_Mut_csrA_degs_DESeq2.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,840 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Complemented_csrA_vs_WT_degs_DESeq2.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,857 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_raw.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,870 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_vst_norm.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,887 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Mut_csrA_vs_WT_degs_DESeq2.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,899 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_normed.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,917 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/overall_dds.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:31,962 copying sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/Lepto.gff -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:32,008 copying sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/counts.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:32,015 copying sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/design.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:32,018 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Complemented_csrA_vs_Mut_csrA_degs_DESeq2.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:32,033 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Complemented_csrA_vs_WT_degs_DESeq2.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:32,049 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_raw.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:32,058 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_vst_norm.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:32,081 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Mut_csrA_vs_WT_degs_DESeq2.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:32,093 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_normed.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:32,111 copying sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/overall_dds.csv -> build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:32,154 copying sequana/resources/testing/featurecounts/featurecounts_ex1/WT__2_S2_feature.out -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,157 copying sequana/resources/testing/featurecounts/featurecounts_ex1/WT__1_S1_feature.out -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,160 copying sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_1_S7_feature.out -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,163 copying sequana/resources/testing/featurecounts/featurecounts_ex1/WT__3_S3_feature.out -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,167 copying sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_2_S8_feature.out -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,170 copying sequana/resources/testing/featurecounts/featurecounts_ex1/all_features.out -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,174 copying sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_3_S9_feature.out -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,177 copying sequana/resources/testing/featurecounts/featurecounts_ex1/README.txt -> build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:32,181 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-04-20T17:10:32,210 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1 2021-04-20T17:10:32,211 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2 2021-04-20T17:10:32,212 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0 2021-04-20T17:10:32,213 copying sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0 2021-04-20T17:10:32,216 copying sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0 2021-04-20T17:10:32,218 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1 2021-04-20T17:10:32,219 copying sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1 2021-04-20T17:10:32,221 copying sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1 2021-04-20T17:10:32,224 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2 2021-04-20T17:10:32,225 copying sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2 2021-04-20T17:10:32,227 copying sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2 2021-04-20T17:10:32,230 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1 2021-04-20T17:10:32,230 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0 2021-04-20T17:10:32,231 copying sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0 2021-04-20T17:10:32,234 copying sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0 2021-04-20T17:10:32,236 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1 2021-04-20T17:10:32,238 copying sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1 2021-04-20T17:10:32,240 copying sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1 2021-04-20T17:10:32,243 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2 2021-04-20T17:10:32,244 copying sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2 2021-04-20T17:10:32,247 copying sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2 2021-04-20T17:10:32,250 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2 2021-04-20T17:10:32,251 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2 2021-04-20T17:10:32,251 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0 2021-04-20T17:10:32,253 copying sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0 2021-04-20T17:10:32,255 copying sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0 2021-04-20T17:10:32,259 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1 2021-04-20T17:10:32,260 copying sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1 2021-04-20T17:10:32,262 copying sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1 2021-04-20T17:10:32,265 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2 2021-04-20T17:10:32,266 copying sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2 2021-04-20T17:10:32,268 copying sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2 2021-04-20T17:10:32,271 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1 2021-04-20T17:10:32,272 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0 2021-04-20T17:10:32,273 copying sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0 2021-04-20T17:10:32,275 copying sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0 2021-04-20T17:10:32,278 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1 2021-04-20T17:10:32,279 copying sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1 2021-04-20T17:10:32,282 copying sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1 2021-04-20T17:10:32,284 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2 2021-04-20T17:10:32,285 copying sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2 2021-04-20T17:10:32,288 copying sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2 2021-04-20T17:10:32,291 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus 2021-04-20T17:10:32,291 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2 2021-04-20T17:10:32,292 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0 2021-04-20T17:10:32,293 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0 2021-04-20T17:10:32,296 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0 2021-04-20T17:10:32,299 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1 2021-04-20T17:10:32,300 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1 2021-04-20T17:10:32,303 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1 2021-04-20T17:10:32,305 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2 2021-04-20T17:10:32,306 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2 2021-04-20T17:10:32,309 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2 2021-04-20T17:10:32,312 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1 2021-04-20T17:10:32,312 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0 2021-04-20T17:10:32,313 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0 2021-04-20T17:10:32,316 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0 2021-04-20T17:10:32,319 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1 2021-04-20T17:10:32,320 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1 2021-04-20T17:10:32,323 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1 2021-04-20T17:10:32,325 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2 2021-04-20T17:10:32,326 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2 2021-04-20T17:10:32,329 copying sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2 2021-04-20T17:10:32,332 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2021-04-20T17:10:32,332 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-04-20T17:10:32,333 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-04-20T17:10:32,336 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-04-20T17:10:32,339 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-04-20T17:10:32,340 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-04-20T17:10:32,342 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-04-20T17:10:32,345 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-04-20T17:10:32,346 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-04-20T17:10:32,349 copying sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-04-20T17:10:32,352 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-04-20T17:10:32,355 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-04-20T17:10:32,359 copying sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-04-20T17:10:32,362 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef 2021-04-20T17:10:32,362 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2 2021-04-20T17:10:32,363 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0 2021-04-20T17:10:32,364 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0 2021-04-20T17:10:32,367 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0 2021-04-20T17:10:32,369 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1 2021-04-20T17:10:32,370 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1 2021-04-20T17:10:32,373 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1 2021-04-20T17:10:32,376 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2 2021-04-20T17:10:32,377 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2 2021-04-20T17:10:32,379 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2 2021-04-20T17:10:32,382 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1 2021-04-20T17:10:32,383 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0 2021-04-20T17:10:32,384 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0 2021-04-20T17:10:32,387 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0 2021-04-20T17:10:32,389 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1 2021-04-20T17:10:32,390 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1 2021-04-20T17:10:32,393 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1 2021-04-20T17:10:32,396 creating build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2 2021-04-20T17:10:32,397 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2 2021-04-20T17:10:32,399 copying sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2/sample_feature.out -> build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2 2021-04-20T17:10:32,402 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2021-04-20T17:10:32,404 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2021-04-20T17:10:32,410 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2021-04-20T17:10:32,414 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2021-04-20T17:10:32,417 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2021-04-20T17:10:32,422 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2021-04-20T17:10:32,435 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2021-04-20T17:10:32,449 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2021-04-20T17:10:32,459 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2021-04-20T17:10:32,461 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2021-04-20T17:10:32,465 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2021-04-20T17:10:32,468 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2021-04-20T17:10:32,470 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2021-04-20T17:10:32,473 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2021-04-20T17:10:32,476 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2021-04-20T17:10:32,495 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2021-04-20T17:10:32,498 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2021-04-20T17:10:32,502 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2021-04-20T17:10:32,530 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2021-04-20T17:10:32,533 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2021-04-20T17:10:32,538 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-04-20T17:10:32,545 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-04-20T17:10:32,645 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2021-04-20T17:10:32,661 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2021-04-20T17:10:32,664 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-04-20T17:10:32,671 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2021-04-20T17:10:32,684 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2021-04-20T17:10:32,687 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2021-04-20T17:10:32,691 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2021-04-20T17:10:32,694 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2021-04-20T17:10:32,698 copying sequana/resources/data/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/data 2021-04-20T17:10:32,701 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-04-20T17:10:32,711 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2021-04-20T17:10:32,814 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2021-04-20T17:10:32,820 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2021-04-20T17:10:32,824 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2021-04-20T17:10:32,828 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2021-04-20T17:10:32,831 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2021-04-20T17:10:32,834 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2021-04-20T17:10:32,837 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2021-04-20T17:10:32,841 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2021-04-20T17:10:32,849 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2021-04-20T17:10:32,853 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2021-04-20T17:10:32,859 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2021-04-20T17:10:32,862 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2021-04-20T17:10:32,865 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,869 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,872 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,882 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,894 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,897 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,900 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,905 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,910 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,916 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,922 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,927 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,931 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2021-04-20T17:10:32,936 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2021-04-20T17:10:32,940 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2021-04-20T17:10:32,943 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2021-04-20T17:10:32,946 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2021-04-20T17:10:32,949 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2021-04-20T17:10:32,953 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,956 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,960 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,963 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,967 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,971 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,974 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,977 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,980 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,983 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,987 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,990 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,994 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:32,997 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,001 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,004 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,008 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,012 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,015 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,018 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,022 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,025 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,029 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,032 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,036 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,039 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,043 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,046 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,049 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,053 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,056 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2021-04-20T17:10:33,099 installing to build/bdist.linux-armv7l/wheel 2021-04-20T17:10:33,100 running install 2021-04-20T17:10:33,101 running install_lib 2021-04-20T17:10:33,105 creating build/bdist.linux-armv7l 2021-04-20T17:10:33,105 creating build/bdist.linux-armv7l/wheel 2021-04-20T17:10:33,109 creating build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:33,111 creating build/bdist.linux-armv7l/wheel/sequana/resources 2021-04-20T17:10:33,112 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2021-04-20T17:10:33,117 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,118 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,121 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,124 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,126 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,129 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,136 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,139 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,141 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,144 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,147 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,149 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,152 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,155 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,157 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,160 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,162 copying build/lib/sequana/resources/testing/test_iem_samplesheet_miseq_double.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,164 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,166 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,168 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,170 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,173 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,176 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,179 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,181 copying build/lib/sequana/resources/testing/test_mgi.fqStat.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,186 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,188 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,191 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,194 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,198 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/enrichment 2021-04-20T17:10:33,199 copying build/lib/sequana/resources/testing/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/enrichment 2021-04-20T17:10:33,202 copying build/lib/sequana/resources/testing/enrichment/ecoli_down_gene.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/enrichment 2021-04-20T17:10:33,210 copying build/lib/sequana/resources/testing/enrichment/ecoli_up_gene.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/enrichment 2021-04-20T17:10:33,220 copying build/lib/sequana/resources/testing/enrichment/ecoli_all_gene.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/enrichment 2021-04-20T17:10:33,237 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,240 copying build/lib/sequana/resources/testing/test_trf1.dat -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,244 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,246 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,254 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,258 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-04-20T17:10:33,260 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-04-20T17:10:33,261 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2021-04-20T17:10:33,263 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-04-20T17:10:33,264 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-04-20T17:10:33,297 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2021-04-20T17:10:33,299 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-04-20T17:10:33,301 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_salmon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-04-20T17:10:33,321 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_bowtie.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-04-20T17:10:33,336 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,337 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Complemented_csrA_vs_Mut_csrA_degs_DESeq2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,352 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Complemented_csrA_vs_WT_degs_DESeq2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,372 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_raw.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,379 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_vst_norm.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,397 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Mut_csrA_vs_WT_degs_DESeq2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,410 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_normed.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,426 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/overall_dds.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex1 2021-04-20T17:10:33,467 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:33,468 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:33,470 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/Lepto.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:33,518 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/counts.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:33,524 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/design.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_ex1 2021-04-20T17:10:33,526 copying build/lib/sequana/resources/testing/rnadiff/README.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-04-20T17:10:33,528 copying build/lib/sequana/resources/testing/rnadiff/design_twocond.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-04-20T17:10:33,531 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,533 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Complemented_csrA_vs_Mut_csrA_degs_DESeq2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,547 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,549 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Complemented_csrA_vs_WT_degs_DESeq2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,561 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_raw.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,568 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_vst_norm.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,589 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Mut_csrA_vs_WT_degs_DESeq2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,603 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_normed.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,626 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/overall_dds.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_twocond_ex2 2021-04-20T17:10:33,661 copying build/lib/sequana/resources/testing/rnadiff/design.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2021-04-20T17:10:33,664 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,667 copying build/lib/sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,670 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,672 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,674 copying build/lib/sequana/resources/testing/test_iem_samplesheet_misnieq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,677 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,691 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,693 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,696 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,705 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,708 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,711 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,715 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,718 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,725 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,727 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,730 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,733 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,735 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,749 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,751 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,754 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,756 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,769 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,771 copying build/lib/sequana/resources/testing/test_iem_samplesheet_iseq100.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,774 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,780 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,783 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,785 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,791 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,793 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,795 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,798 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,801 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,813 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,815 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,818 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,822 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,824 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,828 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,830 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,835 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:33,838 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2021-04-20T17:10:33,840 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1 2021-04-20T17:10:33,842 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2 2021-04-20T17:10:33,844 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0 2021-04-20T17:10:33,845 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0 2021-04-20T17:10:33,847 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0 2021-04-20T17:10:33,850 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1 2021-04-20T17:10:33,851 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1 2021-04-20T17:10:33,853 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1 2021-04-20T17:10:33,857 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2 2021-04-20T17:10:33,858 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2 2021-04-20T17:10:33,860 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2 2021-04-20T17:10:33,863 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1 2021-04-20T17:10:33,865 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0 2021-04-20T17:10:33,867 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0 2021-04-20T17:10:33,869 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0 2021-04-20T17:10:33,872 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1 2021-04-20T17:10:33,873 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1 2021-04-20T17:10:33,876 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1 2021-04-20T17:10:33,879 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2 2021-04-20T17:10:33,880 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2 2021-04-20T17:10:33,882 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2 2021-04-20T17:10:33,885 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2 2021-04-20T17:10:33,887 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2 2021-04-20T17:10:33,890 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0 2021-04-20T17:10:33,891 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0 2021-04-20T17:10:33,894 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0 2021-04-20T17:10:33,898 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1 2021-04-20T17:10:33,900 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1 2021-04-20T17:10:33,903 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1 2021-04-20T17:10:33,907 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2 2021-04-20T17:10:33,908 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2 2021-04-20T17:10:33,912 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2 2021-04-20T17:10:33,915 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1 2021-04-20T17:10:33,917 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0 2021-04-20T17:10:33,919 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0 2021-04-20T17:10:33,921 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0 2021-04-20T17:10:33,925 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1 2021-04-20T17:10:33,926 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1 2021-04-20T17:10:33,928 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1 2021-04-20T17:10:33,932 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2 2021-04-20T17:10:33,933 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2 2021-04-20T17:10:33,935 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2 2021-04-20T17:10:33,938 copying build/lib/sequana/resources/testing/featurecounts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2021-04-20T17:10:33,941 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus 2021-04-20T17:10:33,943 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2 2021-04-20T17:10:33,945 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0 2021-04-20T17:10:33,947 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0 2021-04-20T17:10:33,949 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0 2021-04-20T17:10:33,952 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1 2021-04-20T17:10:33,953 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1 2021-04-20T17:10:33,956 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1 2021-04-20T17:10:33,960 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2 2021-04-20T17:10:33,961 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2 2021-04-20T17:10:33,963 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2 2021-04-20T17:10:33,967 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1 2021-04-20T17:10:33,968 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0 2021-04-20T17:10:33,970 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0 2021-04-20T17:10:33,972 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0 2021-04-20T17:10:33,976 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1 2021-04-20T17:10:33,977 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1 2021-04-20T17:10:33,979 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1 2021-04-20T17:10:33,983 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2 2021-04-20T17:10:33,984 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2 2021-04-20T17:10:33,986 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2 2021-04-20T17:10:33,990 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2021-04-20T17:10:33,991 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0 2021-04-20T17:10:33,994 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2 2021-04-20T17:10:33,996 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-04-20T17:10:33,997 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-04-20T17:10:34,000 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0 2021-04-20T17:10:34,003 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-04-20T17:10:34,004 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-04-20T17:10:34,007 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1 2021-04-20T17:10:34,010 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-04-20T17:10:34,011 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-04-20T17:10:34,014 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2 2021-04-20T17:10:34,017 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-04-20T17:10:34,018 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1 2021-04-20T17:10:34,021 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-04-20T17:10:34,022 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-04-20T17:10:34,025 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0 2021-04-20T17:10:34,028 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-04-20T17:10:34,029 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-04-20T17:10:34,031 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1 2021-04-20T17:10:34,035 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-04-20T17:10:34,036 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-04-20T17:10:34,039 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2 2021-04-20T17:10:34,041 copying build/lib/sequana/resources/testing/featurecounts/README.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts 2021-04-20T17:10:34,044 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef 2021-04-20T17:10:34,047 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2 2021-04-20T17:10:34,049 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0 2021-04-20T17:10:34,050 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0 2021-04-20T17:10:34,053 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0 2021-04-20T17:10:34,056 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1 2021-04-20T17:10:34,057 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1 2021-04-20T17:10:34,060 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1 2021-04-20T17:10:34,063 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2 2021-04-20T17:10:34,064 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2 2021-04-20T17:10:34,067 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2 2021-04-20T17:10:34,070 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1 2021-04-20T17:10:34,072 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0 2021-04-20T17:10:34,074 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0 2021-04-20T17:10:34,076 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0 2021-04-20T17:10:34,080 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1 2021-04-20T17:10:34,082 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1 2021-04-20T17:10:34,084 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1 2021-04-20T17:10:34,087 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2 2021-04-20T17:10:34,088 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2 2021-04-20T17:10:34,091 copying build/lib/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2/sample_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2 2021-04-20T17:10:34,094 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,095 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/WT__2_S2_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,099 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/WT__1_S1_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,102 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,104 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_1_S7_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,107 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/WT__3_S3_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,110 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_2_S8_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,114 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/all_features.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,118 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_3_S9_feature.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,121 copying build/lib/sequana/resources/testing/featurecounts/featurecounts_ex1/README.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/featurecounts/featurecounts_ex1 2021-04-20T17:10:34,124 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,127 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,130 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,132 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,136 copying build/lib/sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,138 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,142 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,149 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,151 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,154 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,214 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,218 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,221 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,225 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,232 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,235 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,238 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,244 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,246 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,248 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,270 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,272 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,276 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,287 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,289 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,291 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,294 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,297 copying build/lib/sequana/resources/testing/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,299 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2021-04-20T17:10:34,306 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,307 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,310 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,320 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,332 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,334 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,342 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,344 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,347 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,349 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,352 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,354 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,356 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,370 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,375 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,377 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,379 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,401 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,403 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,408 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,411 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,417 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,419 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,534 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,554 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,557 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,564 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,581 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,584 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,586 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,588 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,590 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,593 copying build/lib/sequana/resources/data/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,594 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,599 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,701 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,707 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,709 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,711 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,714 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,716 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,719 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,722 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,724 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,727 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,730 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,732 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,735 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,738 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,742 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,745 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,748 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,751 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,755 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,759 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,762 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,765 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,768 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,771 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,775 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,779 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,783 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,787 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,790 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,793 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,797 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,800 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,803 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,806 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2021-04-20T17:10:34,810 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,814 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2021-04-20T17:10:34,819 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-04-20T17:10:34,821 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-04-20T17:10:34,825 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-04-20T17:10:34,827 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-04-20T17:10:34,830 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-04-20T17:10:34,833 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-04-20T17:10:34,837 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2021-04-20T17:10:34,845 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-04-20T17:10:34,847 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-04-20T17:10:34,849 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2021-04-20T17:10:34,853 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-04-20T17:10:34,855 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-04-20T17:10:34,858 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-04-20T17:10:34,862 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-04-20T17:10:34,865 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2021-04-20T17:10:34,870 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,871 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,874 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,877 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,881 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,891 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,903 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,906 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,908 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,913 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,918 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,923 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,928 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,934 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,937 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2021-04-20T17:10:34,942 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-04-20T17:10:34,942 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-04-20T17:10:34,945 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2021-04-20T17:10:34,948 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-04-20T17:10:34,949 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-04-20T17:10:34,951 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2021-04-20T17:10:34,955 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-04-20T17:10:34,956 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-04-20T17:10:34,959 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-04-20T17:10:34,961 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-04-20T17:10:34,963 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-04-20T17:10:34,966 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2021-04-20T17:10:34,968 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:34,971 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:34,974 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:34,977 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:34,980 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:34,983 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-04-20T17:10:34,986 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:34,987 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:34,990 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:34,993 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:34,995 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:34,999 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:35,001 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:35,004 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2021-04-20T17:10:35,007 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2021-04-20T17:10:35,009 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,012 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,015 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-04-20T17:10:35,016 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-04-20T17:10:35,019 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-04-20T17:10:35,021 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2021-04-20T17:10:35,024 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,026 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,029 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,032 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,033 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,037 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,040 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,043 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,045 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,048 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,051 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,054 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,057 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,060 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,062 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,065 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,068 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2021-04-20T17:10:35,071 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,074 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,079 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,082 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,085 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,090 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,095 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,098 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,103 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,107 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,110 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,113 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,115 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,118 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,123 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,128 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,131 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,134 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,138 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,143 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,145 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,149 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,152 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,155 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,159 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,162 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,164 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,168 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,171 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,173 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,176 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,180 creating build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,181 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,184 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,186 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,189 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,193 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,196 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,203 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,206 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,209 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,215 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,219 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,222 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,225 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,228 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,232 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,235 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2021-04-20T17:10:35,239 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,243 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,244 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,248 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,250 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,253 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,256 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,258 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,261 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,264 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,267 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,271 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,273 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,276 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,279 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,283 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2021-04-20T17:10:35,286 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,290 creating build/bdist.linux-armv7l/wheel/sequana/utils 2021-04-20T17:10:35,291 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-04-20T17:10:35,294 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-04-20T17:10:35,297 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-04-20T17:10:35,301 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-04-20T17:10:35,303 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2021-04-20T17:10:35,306 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,310 copying build/lib/sequana/chipseq.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,315 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,318 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,321 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,323 copying build/lib/sequana/annotations.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,326 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,329 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,332 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,334 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,337 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,343 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,345 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,349 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,352 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,355 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,358 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,360 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,364 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,366 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,369 creating build/bdist.linux-armv7l/wheel/sequana/plots 2021-04-20T17:10:35,371 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-04-20T17:10:35,373 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-04-20T17:10:35,376 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2021-04-20T17:10:35,379 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,382 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,385 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,389 creating build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,390 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,393 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,398 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,401 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,405 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,408 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,412 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,414 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,417 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,420 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,424 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,427 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,429 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,432 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,436 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,440 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,443 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,446 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,449 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2021-04-20T17:10:35,452 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,455 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,458 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:35,464 creating build/bdist.linux-armv7l/wheel/sequana/rules 2021-04-20T17:10:35,466 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2021-04-20T17:10:35,468 copying build/lib/sequana/rules/bowtie2_index/bowtie2_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index 2021-04-20T17:10:35,472 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-04-20T17:10:35,474 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2021-04-20T17:10:35,478 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-04-20T17:10:35,479 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2021-04-20T17:10:35,484 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-04-20T17:10:35,485 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2021-04-20T17:10:35,490 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-04-20T17:10:35,491 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2021-04-20T17:10:35,495 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-04-20T17:10:35,496 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2021-04-20T17:10:35,500 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-04-20T17:10:35,502 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2021-04-20T17:10:35,506 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-04-20T17:10:35,508 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2021-04-20T17:10:35,512 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-04-20T17:10:35,513 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2021-04-20T17:10:35,517 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-04-20T17:10:35,519 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2021-04-20T17:10:35,523 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-04-20T17:10:35,525 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2021-04-20T17:10:35,529 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-04-20T17:10:35,531 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2021-04-20T17:10:35,536 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-04-20T17:10:35,538 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2021-04-20T17:10:35,543 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-04-20T17:10:35,545 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2021-04-20T17:10:35,549 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-04-20T17:10:35,551 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2021-04-20T17:10:35,554 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-04-20T17:10:35,557 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-04-20T17:10:35,559 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2021-04-20T17:10:35,563 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-04-20T17:10:35,565 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-04-20T17:10:35,567 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2021-04-20T17:10:35,570 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2021-04-20T17:10:35,574 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-04-20T17:10:35,575 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2021-04-20T17:10:35,579 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-04-20T17:10:35,581 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2021-04-20T17:10:35,585 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-04-20T17:10:35,586 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2021-04-20T17:10:35,590 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-04-20T17:10:35,592 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2021-04-20T17:10:35,595 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-04-20T17:10:35,597 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2021-04-20T17:10:35,601 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-04-20T17:10:35,603 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2021-04-20T17:10:35,607 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-04-20T17:10:35,609 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2021-04-20T17:10:35,612 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-04-20T17:10:35,613 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2021-04-20T17:10:35,617 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-04-20T17:10:35,618 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2021-04-20T17:10:35,622 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-04-20T17:10:35,623 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2021-04-20T17:10:35,626 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-04-20T17:10:35,627 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2021-04-20T17:10:35,631 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-04-20T17:10:35,633 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2021-04-20T17:10:35,636 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-04-20T17:10:35,637 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2021-04-20T17:10:35,641 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-04-20T17:10:35,642 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2021-04-20T17:10:35,646 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-04-20T17:10:35,647 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2021-04-20T17:10:35,651 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-04-20T17:10:35,652 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2021-04-20T17:10:35,655 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-04-20T17:10:35,656 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2021-04-20T17:10:35,660 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-04-20T17:10:35,661 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2021-04-20T17:10:35,666 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-04-20T17:10:35,668 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-04-20T17:10:35,669 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2021-04-20T17:10:35,673 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-04-20T17:10:35,674 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2021-04-20T17:10:35,679 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-04-20T17:10:35,680 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2021-04-20T17:10:35,683 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2021-04-20T17:10:35,686 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-04-20T17:10:35,687 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2021-04-20T17:10:35,691 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-04-20T17:10:35,692 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2021-04-20T17:10:35,695 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-04-20T17:10:35,696 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2021-04-20T17:10:35,700 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-04-20T17:10:35,701 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2021-04-20T17:10:35,704 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-04-20T17:10:35,706 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2021-04-20T17:10:35,709 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-04-20T17:10:35,710 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2021-04-20T17:10:35,714 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-04-20T17:10:35,715 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2021-04-20T17:10:35,718 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2021-04-20T17:10:35,720 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-04-20T17:10:35,721 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2021-04-20T17:10:35,725 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-04-20T17:10:35,726 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2021-04-20T17:10:35,729 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-04-20T17:10:35,730 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2021-04-20T17:10:35,734 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2021-04-20T17:10:35,736 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-04-20T17:10:35,738 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2021-04-20T17:10:35,742 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-04-20T17:10:35,743 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2021-04-20T17:10:35,746 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-04-20T17:10:35,747 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2021-04-20T17:10:35,751 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-04-20T17:10:35,752 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2021-04-20T17:10:35,755 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-04-20T17:10:35,756 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2021-04-20T17:10:35,760 creating build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2021-04-20T17:10:35,762 copying build/lib/sequana/rules/falco_dynamic/falco_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/falco_dynamic 2021-04-20T17:10:35,765 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-04-20T17:10:35,766 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2021-04-20T17:10:35,770 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-04-20T17:10:35,771 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2021-04-20T17:10:35,775 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-04-20T17:10:35,776 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2021-04-20T17:10:35,779 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-04-20T17:10:35,780 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2021-04-20T17:10:35,784 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-04-20T17:10:35,785 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2021-04-20T17:10:35,789 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-04-20T17:10:35,790 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2021-04-20T17:10:35,793 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-04-20T17:10:35,794 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2021-04-20T17:10:35,797 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-04-20T17:10:35,798 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2021-04-20T17:10:35,802 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2021-04-20T17:10:35,803 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2021-04-20T17:10:35,806 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-04-20T17:10:35,808 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2021-04-20T17:10:35,812 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-04-20T17:10:35,813 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2021-04-20T17:10:35,818 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-04-20T17:10:35,819 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2021-04-20T17:10:35,822 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-04-20T17:10:35,824 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2021-04-20T17:10:35,828 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-04-20T17:10:35,830 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2021-04-20T17:10:35,834 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-04-20T17:10:35,836 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2021-04-20T17:10:35,840 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-04-20T17:10:35,842 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2021-04-20T17:10:35,846 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-04-20T17:10:35,847 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2021-04-20T17:10:35,852 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-04-20T17:10:35,853 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2021-04-20T17:10:35,857 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-04-20T17:10:35,859 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2021-04-20T17:10:35,863 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-04-20T17:10:35,864 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2021-04-20T17:10:35,868 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-04-20T17:10:35,870 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2021-04-20T17:10:35,874 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-04-20T17:10:35,875 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2021-04-20T17:10:35,879 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-04-20T17:10:35,881 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2021-04-20T17:10:35,885 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-04-20T17:10:35,886 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2021-04-20T17:10:35,890 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-04-20T17:10:35,892 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2021-04-20T17:10:35,896 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-04-20T17:10:35,898 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2021-04-20T17:10:35,902 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-04-20T17:10:35,903 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2021-04-20T17:10:35,907 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-04-20T17:10:35,909 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2021-04-20T17:10:35,913 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-04-20T17:10:35,914 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2021-04-20T17:10:35,918 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-04-20T17:10:35,920 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2021-04-20T17:10:35,924 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-04-20T17:10:35,925 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2021-04-20T17:10:35,930 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-04-20T17:10:35,932 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-04-20T17:10:35,934 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2021-04-20T17:10:35,937 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2021-04-20T17:10:35,940 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-04-20T17:10:35,942 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2021-04-20T17:10:35,945 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-04-20T17:10:35,947 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2021-04-20T17:10:35,951 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-04-20T17:10:35,952 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2021-04-20T17:10:35,956 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-04-20T17:10:35,958 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2021-04-20T17:10:35,962 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-04-20T17:10:35,963 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2021-04-20T17:10:35,967 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-04-20T17:10:35,969 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2021-04-20T17:10:35,972 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-04-20T17:10:35,974 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2021-04-20T17:10:35,978 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-04-20T17:10:35,979 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2021-04-20T17:10:35,983 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-04-20T17:10:35,985 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2021-04-20T17:10:35,989 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-04-20T17:10:35,990 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2021-04-20T17:10:35,994 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-04-20T17:10:35,996 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2021-04-20T17:10:36,000 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-04-20T17:10:36,001 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2021-04-20T17:10:36,006 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-04-20T17:10:36,008 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2021-04-20T17:10:36,012 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2021-04-20T17:10:36,014 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-04-20T17:10:36,016 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2021-04-20T17:10:36,020 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-04-20T17:10:36,022 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2021-04-20T17:10:36,026 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2021-04-20T17:10:36,029 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-04-20T17:10:36,030 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2021-04-20T17:10:36,034 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-04-20T17:10:36,036 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2021-04-20T17:10:36,040 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-04-20T17:10:36,041 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2021-04-20T17:10:36,045 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-04-20T17:10:36,047 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2021-04-20T17:10:36,051 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-04-20T17:10:36,052 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2021-04-20T17:10:36,056 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-04-20T17:10:36,058 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2021-04-20T17:10:36,061 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2021-04-20T17:10:36,065 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-04-20T17:10:36,066 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2021-04-20T17:10:36,071 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-04-20T17:10:36,072 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2021-04-20T17:10:36,076 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-04-20T17:10:36,077 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2021-04-20T17:10:36,081 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-04-20T17:10:36,083 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2021-04-20T17:10:36,087 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-04-20T17:10:36,088 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2021-04-20T17:10:36,093 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-04-20T17:10:36,095 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2021-04-20T17:10:36,099 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-04-20T17:10:36,101 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2021-04-20T17:10:36,105 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-04-20T17:10:36,106 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2021-04-20T17:10:36,110 creating build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-04-20T17:10:36,112 copying build/lib/sequana/rules/macs3_dynamic/macs3_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/macs3_dynamic 2021-04-20T17:10:36,116 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-04-20T17:10:36,117 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2021-04-20T17:10:36,121 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-04-20T17:10:36,123 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2021-04-20T17:10:36,127 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-04-20T17:10:36,128 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2021-04-20T17:10:36,132 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-04-20T17:10:36,134 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2021-04-20T17:10:36,138 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-04-20T17:10:36,139 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2021-04-20T17:10:36,143 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-04-20T17:10:36,145 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2021-04-20T17:10:36,148 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2021-04-20T17:10:36,154 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,155 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,158 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,162 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,165 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,168 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,171 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,174 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,178 copying build/lib/sequana/modules_report/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,181 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,185 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,189 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,193 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,196 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,199 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,202 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,205 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,208 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,212 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,216 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2021-04-20T17:10:36,220 running install_egg_info 2021-04-20T17:10:36,245 running egg_info 2021-04-20T17:10:36,246 writing sequana.egg-info/PKG-INFO 2021-04-20T17:10:36,249 writing dependency_links to sequana.egg-info/dependency_links.txt 2021-04-20T17:10:36,252 writing entry points to sequana.egg-info/entry_points.txt 2021-04-20T17:10:36,254 writing requirements to sequana.egg-info/requires.txt 2021-04-20T17:10:36,255 writing top-level names to sequana.egg-info/top_level.txt 2021-04-20T17:10:36,382 reading manifest file 'sequana.egg-info/SOURCES.txt' 2021-04-20T17:10:36,405 reading manifest template 'MANIFEST.in' 2021-04-20T17:10:36,410 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-04-20T17:10:36,413 warning: no previously-included files matching '*pyc' found under directory '*' 2021-04-20T17:10:38,271 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2021-04-20T17:10:38,273 warning: no previously-included files matching '*' found under directory 'test' 2021-04-20T17:10:38,276 warning: no previously-included files found matching 'sequana/rm2.py' 2021-04-20T17:10:38,316 writing manifest file 'sequana.egg-info/SOURCES.txt' 2021-04-20T17:10:38,319 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.11.1-py3.7.egg-info 2021-04-20T17:10:38,339 running install_scripts 2021-04-20T17:10:38,471 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-04-20T17:10:38,480 creating build/bdist.linux-armv7l/wheel/sequana-0.11.1.dist-info/WHEEL 2021-04-20T17:10:38,484 creating '/tmp/pip-wheel-ekxoe7sf/sequana-0.11.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-04-20T17:10:38,487 adding 'sequana/__init__.py' 2021-04-20T17:10:38,493 adding 'sequana/adapters.py' 2021-04-20T17:10:38,495 adding 'sequana/annotations.py' 2021-04-20T17:10:38,497 adding 'sequana/assembly.py' 2021-04-20T17:10:38,506 adding 'sequana/bamtools.py' 2021-04-20T17:10:38,509 adding 'sequana/bed.py' 2021-04-20T17:10:38,521 adding 'sequana/bedtools.py' 2021-04-20T17:10:38,524 adding 'sequana/busco.py' 2021-04-20T17:10:38,526 adding 'sequana/canu_scanner.py' 2021-04-20T17:10:38,531 adding 'sequana/chipseq.py' 2021-04-20T17:10:38,534 adding 'sequana/cigar.py' 2021-04-20T17:10:38,535 adding 'sequana/cnv.py' 2021-04-20T17:10:38,538 adding 'sequana/compare.py' 2021-04-20T17:10:38,540 adding 'sequana/contigs.py' 2021-04-20T17:10:38,543 adding 'sequana/coverage.py' 2021-04-20T17:10:38,544 adding 'sequana/cpg_islands.py' 2021-04-20T17:10:38,546 adding 'sequana/criteria.py' 2021-04-20T17:10:38,549 adding 'sequana/databases.py' 2021-04-20T17:10:38,551 adding 'sequana/datatools.py' 2021-04-20T17:10:38,553 adding 'sequana/demultiplex.py' 2021-04-20T17:10:38,561 adding 'sequana/enrichment.py' 2021-04-20T17:10:38,563 adding 'sequana/errors.py' 2021-04-20T17:10:38,566 adding 'sequana/fasta.py' 2021-04-20T17:10:38,573 adding 'sequana/fastq.py' 2021-04-20T17:10:38,576 adding 'sequana/fastqc.py' 2021-04-20T17:10:38,579 adding 'sequana/featurecounts.py' 2021-04-20T17:10:38,581 adding 'sequana/find_motif.py' 2021-04-20T17:10:38,583 adding 'sequana/freebayes_bcf_filter.py' 2021-04-20T17:10:38,586 adding 'sequana/freebayes_vcf_filter.py' 2021-04-20T17:10:38,589 adding 'sequana/genbank.py' 2021-04-20T17:10:38,593 adding 'sequana/gff3.py' 2021-04-20T17:10:38,595 adding 'sequana/gtf.py' 2021-04-20T17:10:38,597 adding 'sequana/iem.py' 2021-04-20T17:10:38,600 adding 'sequana/iotools.py' 2021-04-20T17:10:38,604 adding 'sequana/isoseq.py' 2021-04-20T17:10:38,606 adding 'sequana/itol.py' 2021-04-20T17:10:38,608 adding 'sequana/iuapc.py' 2021-04-20T17:10:38,610 adding 'sequana/jsontool.py' 2021-04-20T17:10:38,612 adding 'sequana/kegg.py' 2021-04-20T17:10:38,614 adding 'sequana/kmer.py' 2021-04-20T17:10:38,623 adding 'sequana/kraken.py' 2021-04-20T17:10:38,629 adding 'sequana/kraken_builder.py' 2021-04-20T17:10:38,631 adding 'sequana/krona.py' 2021-04-20T17:10:38,634 adding 'sequana/laa.py' 2021-04-20T17:10:38,636 adding 'sequana/lazy.py' 2021-04-20T17:10:38,638 adding 'sequana/lazyimports.py' 2021-04-20T17:10:38,640 adding 'sequana/mgi.py' 2021-04-20T17:10:38,642 adding 'sequana/mh.py' 2021-04-20T17:10:38,644 adding 'sequana/misc.py' 2021-04-20T17:10:38,647 adding 'sequana/mixture.py' 2021-04-20T17:10:38,653 adding 'sequana/pacbio.py' 2021-04-20T17:10:38,656 adding 'sequana/pacbio_amplicon.py' 2021-04-20T17:10:38,658 adding 'sequana/phred.py' 2021-04-20T17:10:38,663 adding 'sequana/pipelines_common.py' 2021-04-20T17:10:38,666 adding 'sequana/protein.py' 2021-04-20T17:10:38,672 adding 'sequana/rnadiff.py' 2021-04-20T17:10:38,675 adding 'sequana/running_median.py' 2021-04-20T17:10:38,677 adding 'sequana/salmon.py' 2021-04-20T17:10:38,682 adding 'sequana/sequence.py' 2021-04-20T17:10:38,693 adding 'sequana/snaketools.py' 2021-04-20T17:10:38,696 adding 'sequana/sniffer.py' 2021-04-20T17:10:38,698 adding 'sequana/snpeff.py' 2021-04-20T17:10:38,700 adding 'sequana/stats.py' 2021-04-20T17:10:38,703 adding 'sequana/summary.py' 2021-04-20T17:10:38,706 adding 'sequana/taxonomy.py' 2021-04-20T17:10:38,709 adding 'sequana/tools.py' 2021-04-20T17:10:38,712 adding 'sequana/trf.py' 2021-04-20T17:10:38,715 adding 'sequana/vcf_filter.py' 2021-04-20T17:10:38,717 adding 'sequana/vcftools.py' 2021-04-20T17:10:38,719 adding 'sequana/vst.py' 2021-04-20T17:10:38,721 adding 'sequana/gui/__init__.py' 2021-04-20T17:10:38,722 adding 'sequana/gui/about.py' 2021-04-20T17:10:38,725 adding 'sequana/gui/browser.py' 2021-04-20T17:10:38,727 adding 'sequana/gui/file_browser.py' 2021-04-20T17:10:38,729 adding 'sequana/gui/help.py' 2021-04-20T17:10:38,731 adding 'sequana/gui/ipython.py' 2021-04-20T17:10:38,733 adding 'sequana/gui/messages.py' 2021-04-20T17:10:38,735 adding 'sequana/gui/preferences.py' 2021-04-20T17:10:38,745 adding 'sequana/gui/sequana_gui.py' 2021-04-20T17:10:38,748 adding 'sequana/gui/snakemake.py' 2021-04-20T17:10:38,750 adding 'sequana/gui/tools.py' 2021-04-20T17:10:38,752 adding 'sequana/gui/ui_help.py' 2021-04-20T17:10:38,757 adding 'sequana/gui/ui_mainwindow.py' 2021-04-20T17:10:38,759 adding 'sequana/gui/ui_preferences.py' 2021-04-20T17:10:38,762 adding 'sequana/gui/ui_snakemake.py' 2021-04-20T17:10:38,765 adding 'sequana/gui/widgets.py' 2021-04-20T17:10:38,767 adding 'sequana/modules_report/__init__.py' 2021-04-20T17:10:38,769 adding 'sequana/modules_report/bamqc.py' 2021-04-20T17:10:38,771 adding 'sequana/modules_report/base_module.py' 2021-04-20T17:10:38,773 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2021-04-20T17:10:38,777 adding 'sequana/modules_report/coverage.py' 2021-04-20T17:10:38,780 adding 'sequana/modules_report/cutadapt.py' 2021-04-20T17:10:38,784 adding 'sequana/modules_report/enrichment.py' 2021-04-20T17:10:38,786 adding 'sequana/modules_report/fastq_stats.py' 2021-04-20T17:10:38,788 adding 'sequana/modules_report/fastqc.py' 2021-04-20T17:10:38,790 adding 'sequana/modules_report/joint_calling.py' 2021-04-20T17:10:38,792 adding 'sequana/modules_report/kraken.py' 2021-04-20T17:10:38,795 adding 'sequana/modules_report/multi_summary.py' 2021-04-20T17:10:38,797 adding 'sequana/modules_report/pacbio_input_bam.py' 2021-04-20T17:10:38,799 adding 'sequana/modules_report/phix.py' 2021-04-20T17:10:38,801 adding 'sequana/modules_report/quast.py' 2021-04-20T17:10:38,804 adding 'sequana/modules_report/rnadiff.py' 2021-04-20T17:10:38,807 adding 'sequana/modules_report/summary.py' 2021-04-20T17:10:38,809 adding 'sequana/modules_report/trf.py' 2021-04-20T17:10:38,811 adding 'sequana/modules_report/variant_calling.py' 2021-04-20T17:10:38,814 adding 'sequana/multiqc/__init__.py' 2021-04-20T17:10:38,816 adding 'sequana/multiqc/bamtools_stats.py' 2021-04-20T17:10:38,818 adding 'sequana/multiqc/config.py' 2021-04-20T17:10:38,820 adding 'sequana/multiqc/coverage.py' 2021-04-20T17:10:38,823 adding 'sequana/multiqc/isoseq.py' 2021-04-20T17:10:38,825 adding 'sequana/multiqc/isoseq_qc.py' 2021-04-20T17:10:38,827 adding 'sequana/multiqc/kraken.py' 2021-04-20T17:10:38,829 adding 'sequana/multiqc/laa.py' 2021-04-20T17:10:38,832 adding 'sequana/multiqc/multiqc_config.yaml' 2021-04-20T17:10:38,834 adding 'sequana/multiqc/pacbio_amplicon.py' 2021-04-20T17:10:38,836 adding 'sequana/multiqc/pacbio_qc.py' 2021-04-20T17:10:38,838 adding 'sequana/multiqc/plots.py' 2021-04-20T17:10:38,840 adding 'sequana/multiqc/quality_control.py' 2021-04-20T17:10:38,842 adding 'sequana/pipelines/__init__.py' 2021-04-20T17:10:38,844 adding 'sequana/pipelines/compressor/README.rst' 2021-04-20T17:10:38,846 adding 'sequana/pipelines/compressor/cluster_config.json' 2021-04-20T17:10:38,848 adding 'sequana/pipelines/compressor/compressor.rules' 2021-04-20T17:10:38,850 adding 'sequana/pipelines/compressor/config.yaml' 2021-04-20T17:10:38,852 adding 'sequana/pipelines/compressor/dag.png' 2021-04-20T17:10:38,854 adding 'sequana/pipelines/compressor/requirements.txt' 2021-04-20T17:10:38,856 adding 'sequana/pipelines/compressor/schema.yaml' 2021-04-20T17:10:38,858 adding 'sequana/plots/__init__.py' 2021-04-20T17:10:38,860 adding 'sequana/plots/canvasjs_base.py' 2021-04-20T17:10:38,862 adding 'sequana/plots/canvasjs_linegraph.py' 2021-04-20T17:10:38,864 adding 'sequana/resources/__init__.py' 2021-04-20T17:10:38,866 adding 'sequana/resources/busco/__init__.py' 2021-04-20T17:10:38,868 adding 'sequana/resources/busco/config.ini' 2021-04-20T17:10:38,870 adding 'sequana/resources/canvas/__init__.py' 2021-04-20T17:10:38,872 adding 'sequana/resources/canvas/bar.py' 2021-04-20T17:10:38,874 adding 'sequana/resources/css/__init__.py' 2021-04-20T17:10:38,886 adding 'sequana/resources/css/bootstrap.min.css' 2021-04-20T17:10:38,889 adding 'sequana/resources/css/buttons.dataTables.min.css' 2021-04-20T17:10:38,891 adding 'sequana/resources/css/jquery.dataTables.min.css' 2021-04-20T17:10:38,893 adding 'sequana/resources/css/jquery.dropdown.min.css' 2021-04-20T17:10:38,895 adding 'sequana/resources/css/report.css' 2021-04-20T17:10:38,909 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2021-04-20T17:10:38,923 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2021-04-20T17:10:38,926 adding 'sequana/resources/data/JB409847.bcf' 2021-04-20T17:10:38,977 adding 'sequana/resources/data/JB409847.bed' 2021-04-20T17:10:39,104 adding 'sequana/resources/data/JB409847.cov.csv' 2021-04-20T17:10:39,111 adding 'sequana/resources/data/JB409847.csv' 2021-04-20T17:10:39,115 adding 'sequana/resources/data/JB409847.expected.vcf' 2021-04-20T17:10:39,126 adding 'sequana/resources/data/JB409847.fasta' 2021-04-20T17:10:39,130 adding 'sequana/resources/data/JB409847.filter.vcf' 2021-04-20T17:10:39,370 adding 'sequana/resources/data/JB409847.gbk' 2021-04-20T17:10:39,373 adding 'sequana/resources/data/JB409847.vc.csv' 2021-04-20T17:10:39,378 adding 'sequana/resources/data/JB409847.vcf' 2021-04-20T17:10:39,879 adding 'sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz' 2021-04-20T17:10:39,912 adding 'sequana/resources/data/KO_ATCACG_R1_test.fastq.gz' 2021-04-20T17:10:39,914 adding 'sequana/resources/data/README.rst' 2021-04-20T17:10:39,933 adding 'sequana/resources/data/SIRV.fa' 2021-04-20T17:10:40,437 adding 'sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz' 2021-04-20T17:10:40,468 adding 'sequana/resources/data/__init__.py' 2021-04-20T17:10:40,539 adding 'sequana/resources/data/hg38_chr18.bed' 2021-04-20T17:10:40,600 adding 'sequana/resources/data/kegg.csv' 2021-04-20T17:10:40,658 adding 'sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam' 2021-04-20T17:10:40,669 adding 'sequana/resources/data/measles.fa' 2021-04-20T17:10:40,671 adding 'sequana/resources/data/measles.fa.amb' 2021-04-20T17:10:40,673 adding 'sequana/resources/data/measles.fa.ann' 2021-04-20T17:10:40,676 adding 'sequana/resources/data/measles.fa.bwt' 2021-04-20T17:10:40,679 adding 'sequana/resources/data/measles.fa.pac' 2021-04-20T17:10:40,682 adding 'sequana/resources/data/measles.fa.sa' 2021-04-20T17:10:40,708 adding 'sequana/resources/data/measles.fa.sorted.bam' 2021-04-20T17:10:40,711 adding 'sequana/resources/data/measles.fa.sorted.bam.bai' 2021-04-20T17:10:40,713 adding 'sequana/resources/data/panther.csv' 2021-04-20T17:10:40,716 adding 'sequana/resources/data/phiX174.fa' 2021-04-20T17:10:40,729 adding 'sequana/resources/data/test_L001_R1_001.fastq.gz' 2021-04-20T17:10:40,743 adding 'sequana/resources/data/test_L002_R1_001.fastq.gz' 2021-04-20T17:10:40,750 adding 'sequana/resources/data/test_hg38_chr18.bam' 2021-04-20T17:10:40,752 adding 'sequana/resources/data/test_small.gff3' 2021-04-20T17:10:40,753 adding 'sequana/resources/data/test_wrong_bed.bed' 2021-04-20T17:10:40,812 adding 'sequana/resources/data/virus.bed' 2021-04-20T17:10:40,816 adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa' 2021-04-20T17:10:40,818 adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa' 2021-04-20T17:10:40,820 adding 'sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa' 2021-04-20T17:10:40,822 adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa' 2021-04-20T17:10:40,824 adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa' 2021-04-20T17:10:40,827 adding 'sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa' 2021-04-20T17:10:40,829 adding 'sequana/resources/data/adapters/README.rst' 2021-04-20T17:10:40,831 adding 'sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa' 2021-04-20T17:10:40,832 adding 'sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa' 2021-04-20T17:10:40,834 adding 'sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa' 2021-04-20T17:10:40,835 adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa' 2021-04-20T17:10:40,837 adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa' 2021-04-20T17:10:40,839 adding 'sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa' 2021-04-20T17:10:40,841 adding 'sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa' 2021-04-20T17:10:40,842 adding 'sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa' 2021-04-20T17:10:40,844 adding 'sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa' 2021-04-20T17:10:40,846 adding 'sequana/resources/data/adapters/__init__.py' 2021-04-20T17:10:40,847 adding 'sequana/resources/data/adapters/adapters_NEBNext_fwd.fa' 2021-04-20T17:10:40,849 adding 'sequana/resources/data/adapters/adapters_NEBNext_rev.fa' 2021-04-20T17:10:40,851 adding 'sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa' 2021-04-20T17:10:40,852 adding 'sequana/resources/data/adapters/adapters_Nextera_fwd.fa' 2021-04-20T17:10:40,854 adding 'sequana/resources/data/adapters/adapters_Nextera_rev.fa' 2021-04-20T17:10:40,855 adding 'sequana/resources/data/adapters/adapters_Nextera_revcomp.fa' 2021-04-20T17:10:40,857 adding 'sequana/resources/data/adapters/adapters_SMARTer_fwd.fa' 2021-04-20T17:10:40,858 adding 'sequana/resources/data/adapters/adapters_SMARTer_rev.fa' 2021-04-20T17:10:40,859 adding 'sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa' 2021-04-20T17:10:40,861 adding 'sequana/resources/data/adapters/adapters_Small_fwd.fa' 2021-04-20T17:10:40,863 adding 'sequana/resources/data/adapters/adapters_Small_rev.fa' 2021-04-20T17:10:40,864 adding 'sequana/resources/data/adapters/adapters_Small_revcomp.fa' 2021-04-20T17:10:40,866 adding 'sequana/resources/data/adapters/adapters_TruSeq_fwd.fa' 2021-04-20T17:10:40,867 adding 'sequana/resources/data/adapters/adapters_TruSeq_rev.fa' 2021-04-20T17:10:40,868 adding 'sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa' 2021-04-20T17:10:40,874 adding 'sequana/resources/images/Institut_Pasteur.png' 2021-04-20T17:10:40,876 adding 'sequana/resources/images/__init__.py' 2021-04-20T17:10:40,877 adding 'sequana/resources/images/no_data.jpg' 2021-04-20T17:10:40,879 adding 'sequana/resources/images/no_data.png' 2021-04-20T17:10:40,881 adding 'sequana/resources/js/__init__.py' 2021-04-20T17:10:40,886 adding 'sequana/resources/js/bootstrap.min.js' 2021-04-20T17:10:40,889 adding 'sequana/resources/js/buttons.html5.min.js' 2021-04-20T17:10:40,892 adding 'sequana/resources/js/buttons.print.min.js' 2021-04-20T17:10:40,917 adding 'sequana/resources/js/canvasjs.min.js' 2021-04-20T17:10:40,921 adding 'sequana/resources/js/dataTables.buttons.min.js' 2021-04-20T17:10:40,963 adding 'sequana/resources/js/jquery-2.1.1.js' 2021-04-20T17:10:40,977 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2021-04-20T17:10:40,990 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2021-04-20T17:10:41,003 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2021-04-20T17:10:41,015 adding 'sequana/resources/js/jquery.dataTables.min.js' 2021-04-20T17:10:41,017 adding 'sequana/resources/js/jquery.dropdown.min.js' 2021-04-20T17:10:41,019 adding 'sequana/resources/js/jquery.tocPlugin.js' 2021-04-20T17:10:41,021 adding 'sequana/resources/js/papaparse.min.js' 2021-04-20T17:10:41,023 adding 'sequana/resources/snpeff/__init__.py' 2021-04-20T17:10:41,025 adding 'sequana/resources/snpeff/snpEff.config' 2021-04-20T17:10:41,027 adding 'sequana/resources/templates/__init__.py' 2021-04-20T17:10:41,029 adding 'sequana/resources/templates/base.html' 2021-04-20T17:10:41,030 adding 'sequana/resources/templates/joint_calling.html' 2021-04-20T17:10:41,032 adding 'sequana/resources/templates/rnadiff_light_template.R' 2021-04-20T17:10:41,034 adding 'sequana/resources/templates/standard.html' 2021-04-20T17:10:41,036 adding 'sequana/resources/testing/README.rst' 2021-04-20T17:10:41,037 adding 'sequana/resources/testing/__init__.py' 2021-04-20T17:10:41,038 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2021-04-20T17:10:41,048 adding 'sequana/resources/testing/measles.fa' 2021-04-20T17:10:41,049 adding 'sequana/resources/testing/measles.fa.fai' 2021-04-20T17:10:41,052 adding 'sequana/resources/testing/saccer3_truncated.gff' 2021-04-20T17:10:41,053 adding 'sequana/resources/testing/summary_bamtools_stats.txt' 2021-04-20T17:10:41,055 adding 'sequana/resources/testing/summary_coverage1.json' 2021-04-20T17:10:41,056 adding 'sequana/resources/testing/summary_coverage2.json' 2021-04-20T17:10:41,058 adding 'sequana/resources/testing/summary_kraken.json' 2021-04-20T17:10:41,060 adding 'sequana/resources/testing/summary_pacbio_qc1.json' 2021-04-20T17:10:41,061 adding 'sequana/resources/testing/summary_pacbio_qc2.json' 2021-04-20T17:10:41,063 adding 'sequana/resources/testing/summary_pacbio_qc3.json' 2021-04-20T17:10:41,064 adding 'sequana/resources/testing/summary_qc.json' 2021-04-20T17:10:41,069 adding 'sequana/resources/testing/test.bam' 2021-04-20T17:10:41,070 adding 'sequana/resources/testing/test.bam.bai' 2021-04-20T17:10:41,078 adding 'sequana/resources/testing/test.fasta' 2021-04-20T17:10:41,097 adding 'sequana/resources/testing/test.fastq' 2021-04-20T17:10:41,100 adding 'sequana/resources/testing/test.fastq.gz' 2021-04-20T17:10:41,131 adding 'sequana/resources/testing/test.sam' 2021-04-20T17:10:41,134 adding 'sequana/resources/testing/test.vcf' 2021-04-20T17:10:41,138 adding 'sequana/resources/testing/test_1_1000.fastq.gz' 2021-04-20T17:10:41,365 adding 'sequana/resources/testing/test_CS_tiny.bam' 2021-04-20T17:10:41,427 adding 'sequana/resources/testing/test_JB409847.bed' 2021-04-20T17:10:41,441 adding 'sequana/resources/testing/test_R1_.mapped.fastq' 2021-04-20T17:10:41,442 adding 'sequana/resources/testing/test_R1_.unmapped.fastq' 2021-04-20T17:10:41,454 adding 'sequana/resources/testing/test_R2_.mapped.fastq' 2021-04-20T17:10:41,456 adding 'sequana/resources/testing/test_R2_.unmapped.fastq' 2021-04-20T17:10:41,457 adding 'sequana/resources/testing/test_adapter_removal_output.txt' 2021-04-20T17:10:41,460 adding 'sequana/resources/testing/test_atropos_paired.txt' 2021-04-20T17:10:41,468 adding 'sequana/resources/testing/test_atropos_pe.json' 2021-04-20T17:10:41,471 adding 'sequana/resources/testing/test_atropos_pe.txt' 2021-04-20T17:10:41,477 adding 'sequana/resources/testing/test_atropos_se.json' 2021-04-20T17:10:41,479 adding 'sequana/resources/testing/test_atropos_se.txt' 2021-04-20T17:10:41,494 adding 'sequana/resources/testing/test_blast_ebi.xml' 2021-04-20T17:10:41,499 adding 'sequana/resources/testing/test_blast_local.xml' 2021-04-20T17:10:41,501 adding 'sequana/resources/testing/test_busco_full_table.tsv' 2021-04-20T17:10:41,502 adding 'sequana/resources/testing/test_cnvnator.txt' 2021-04-20T17:10:41,520 adding 'sequana/resources/testing/test_contigs_ex1.fasta' 2021-04-20T17:10:41,527 adding 'sequana/resources/testing/test_contigs_spades.fasta' 2021-04-20T17:10:41,560 adding 'sequana/resources/testing/test_coverage.csv' 2021-04-20T17:10:41,565 adding 'sequana/resources/testing/test_cutadapt_paired.txt' 2021-04-20T17:10:41,566 adding 'sequana/resources/testing/test_dag.ann.dot' 2021-04-20T17:10:41,567 adding 'sequana/resources/testing/test_dag.dot' 2021-04-20T17:10:41,576 adding 'sequana/resources/testing/test_demultiplex_Stats.json' 2021-04-20T17:10:41,579 adding 'sequana/resources/testing/test_demultiplex_Stats_undetermined.json' 2021-04-20T17:10:41,581 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2021-04-20T17:10:41,583 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2021-04-20T17:10:41,584 adding 'sequana/resources/testing/test_expdesign_hiseq.csv' 2021-04-20T17:10:41,586 adding 'sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv' 2021-04-20T17:10:41,588 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2021-04-20T17:10:41,591 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2021-04-20T17:10:41,593 adding 'sequana/resources/testing/test_expdesign_miseq_illumina2.csv' 2021-04-20T17:10:41,595 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_1.csv' 2021-04-20T17:10:41,596 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv' 2021-04-20T17:10:41,598 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2021-04-20T17:10:41,600 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2021-04-20T17:10:41,601 adding 'sequana/resources/testing/test_expdesign_wrong.csv' 2021-04-20T17:10:41,605 adding 'sequana/resources/testing/test_fasta.fasta' 2021-04-20T17:10:41,606 adding 'sequana/resources/testing/test_fasta_filtering.fa' 2021-04-20T17:10:41,616 adding 'sequana/resources/testing/test_fastqc_report.zip' 2021-04-20T17:10:41,618 adding 'sequana/resources/testing/test_generic.rules' 2021-04-20T17:10:41,619 adding 'sequana/resources/testing/test_generic.yaml' 2021-04-20T17:10:41,620 adding 'sequana/resources/testing/test_gtf_fixer.gtf' 2021-04-20T17:10:41,621 adding 'sequana/resources/testing/test_gui_generic_config.yaml' 2021-04-20T17:10:41,622 adding 'sequana/resources/testing/test_gui_generic_snakefile_config.rules' 2021-04-20T17:10:41,624 adding 'sequana/resources/testing/test_gui_generic_snakefile_configfile.rules' 2021-04-20T17:10:41,625 adding 'sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules' 2021-04-20T17:10:41,626 adding 'sequana/resources/testing/test_heatmap.csv' 2021-04-20T17:10:41,627 adding 'sequana/resources/testing/test_iem_samplesheet_hiseq_single.csv' 2021-04-20T17:10:41,629 adding 'sequana/resources/testing/test_iem_samplesheet_iseq100.csv' 2021-04-20T17:10:41,630 adding 'sequana/resources/testing/test_iem_samplesheet_miseq_double.csv' 2021-04-20T17:10:41,631 adding 'sequana/resources/testing/test_iem_samplesheet_misnieq.csv' 2021-04-20T17:10:41,632 adding 'sequana/resources/testing/test_iem_samplesheet_nextseq_single.csv' 2021-04-20T17:10:41,634 adding 'sequana/resources/testing/test_index_mapper.csv' 2021-04-20T17:10:41,655 adding 'sequana/resources/testing/test_isoseq_lq_sirv.bam' 2021-04-20T17:10:41,657 adding 'sequana/resources/testing/test_itol_basic.tree.txt' 2021-04-20T17:10:41,668 adding 'sequana/resources/testing/test_kraken.out' 2021-04-20T17:10:41,671 adding 'sequana/resources/testing/test_kraken.out.summary' 2021-04-20T17:10:41,672 adding 'sequana/resources/testing/test_kraken_mkr2_summary_1.json' 2021-04-20T17:10:41,673 adding 'sequana/resources/testing/test_kraken_mkr2_summary_2.json' 2021-04-20T17:10:41,675 adding 'sequana/resources/testing/test_kraken_multiple_1.csv' 2021-04-20T17:10:41,676 adding 'sequana/resources/testing/test_kraken_multiple_2.csv' 2021-04-20T17:10:41,677 adding 'sequana/resources/testing/test_krona_k1.tsv' 2021-04-20T17:10:41,678 adding 'sequana/resources/testing/test_krona_k2.tsv' 2021-04-20T17:10:41,679 adding 'sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv' 2021-04-20T17:10:41,681 adding 'sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv' 2021-04-20T17:10:41,682 adding 'sequana/resources/testing/test_measles.bam' 2021-04-20T17:10:41,684 adding 'sequana/resources/testing/test_measles.cram' 2021-04-20T17:10:41,688 adding 'sequana/resources/testing/test_measles.sam' 2021-04-20T17:10:41,700 adding 'sequana/resources/testing/test_mgi.fqStat.txt' 2021-04-20T17:10:41,702 adding 'sequana/resources/testing/test_pacbio_barcode_report.csv' 2021-04-20T17:10:41,743 adding 'sequana/resources/testing/test_pacbio_subreads.bam' 2021-04-20T17:10:41,746 adding 'sequana/resources/testing/test_pacbio_subreads.bam.bai' 2021-04-20T17:10:41,797 adding 'sequana/resources/testing/test_pca.csv' 2021-04-20T17:10:41,800 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2021-04-20T17:10:41,833 adding 'sequana/resources/testing/test_sirv.xls' 2021-04-20T17:10:41,836 adding 'sequana/resources/testing/test_snakemake_stats.txt' 2021-04-20T17:10:42,063 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2021-04-20T17:10:42,068 adding 'sequana/resources/testing/test_summary_fastq_stats.json' 2021-04-20T17:10:42,070 adding 'sequana/resources/testing/test_summary_module.svg' 2021-04-20T17:10:42,071 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2021-04-20T17:10:42,076 adding 'sequana/resources/testing/test_trf1.dat' 2021-04-20T17:10:42,089 adding 'sequana/resources/testing/test_vcf_mpileup_4dot1.vcf' 2021-04-20T17:10:42,091 adding 'sequana/resources/testing/enrichment/__init__.py' 2021-04-20T17:10:42,241 adding 'sequana/resources/testing/enrichment/ecoli_all_gene.csv' 2021-04-20T17:10:42,278 adding 'sequana/resources/testing/enrichment/ecoli_down_gene.csv' 2021-04-20T17:10:42,313 adding 'sequana/resources/testing/enrichment/ecoli_up_gene.csv' 2021-04-20T17:10:42,316 adding 'sequana/resources/testing/featurecounts/README.txt' 2021-04-20T17:10:42,317 adding 'sequana/resources/testing/featurecounts/__init__.py' 2021-04-20T17:10:42,320 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_1_S7_feature.out' 2021-04-20T17:10:42,322 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_2_S8_feature.out' 2021-04-20T17:10:42,324 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/Complemented_csrA_3_S9_feature.out' 2021-04-20T17:10:42,326 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/README.txt' 2021-04-20T17:10:42,327 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/WT__1_S1_feature.out' 2021-04-20T17:10:42,330 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/WT__2_S2_feature.out' 2021-04-20T17:10:42,332 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/WT__3_S3_feature.out' 2021-04-20T17:10:42,333 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/__init__.py' 2021-04-20T17:10:42,336 adding 'sequana/resources/testing/featurecounts/featurecounts_ex1/all_features.out' 2021-04-20T17:10:42,338 adding 'sequana/resources/testing/featurecounts/rnaseq_0/__init__.py' 2021-04-20T17:10:42,339 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample1/__init__.py' 2021-04-20T17:10:42,341 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/__init__.py' 2021-04-20T17:10:42,342 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,344 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/__init__.py' 2021-04-20T17:10:42,345 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,346 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/__init__.py' 2021-04-20T17:10:42,348 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample1/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,350 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/__init__.py' 2021-04-20T17:10:42,351 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,353 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/__init__.py' 2021-04-20T17:10:42,354 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,356 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/__init__.py' 2021-04-20T17:10:42,357 adding 'sequana/resources/testing/featurecounts/rnaseq_0/sample2/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,360 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0/__init__.py' 2021-04-20T17:10:42,361 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,363 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1/__init__.py' 2021-04-20T17:10:42,365 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,367 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2/__init__.py' 2021-04-20T17:10:42,368 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample1/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,370 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0/__init__.py' 2021-04-20T17:10:42,372 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,374 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1/__init__.py' 2021-04-20T17:10:42,375 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,378 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2/__init__.py' 2021-04-20T17:10:42,379 adding 'sequana/resources/testing/featurecounts/rnaseq_1/sample2/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,382 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0/__init__.py' 2021-04-20T17:10:42,383 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,386 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1/__init__.py' 2021-04-20T17:10:42,387 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,389 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2/__init__.py' 2021-04-20T17:10:42,391 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample1/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,393 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0/__init__.py' 2021-04-20T17:10:42,394 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,396 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1/__init__.py' 2021-04-20T17:10:42,397 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,399 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2/__init__.py' 2021-04-20T17:10:42,401 adding 'sequana/resources/testing/featurecounts/rnaseq_2/sample2/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,404 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0/__init__.py' 2021-04-20T17:10:42,405 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,407 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1/__init__.py' 2021-04-20T17:10:42,409 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,410 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2/__init__.py' 2021-04-20T17:10:42,412 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample1/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,414 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0/__init__.py' 2021-04-20T17:10:42,415 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,417 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1/__init__.py' 2021-04-20T17:10:42,419 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,421 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2/__init__.py' 2021-04-20T17:10:42,422 adding 'sequana/resources/testing/featurecounts/rnaseq_noconsensus/sample2/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,424 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0/__init__.py' 2021-04-20T17:10:42,426 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,428 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1/__init__.py' 2021-04-20T17:10:42,429 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,431 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2/__init__.py' 2021-04-20T17:10:42,432 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample1/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,434 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0/__init__.py' 2021-04-20T17:10:42,435 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_0/sample_feature.out' 2021-04-20T17:10:42,437 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1/__init__.py' 2021-04-20T17:10:42,439 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_1/sample_feature.out' 2021-04-20T17:10:42,441 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2/__init__.py' 2021-04-20T17:10:42,442 adding 'sequana/resources/testing/featurecounts/rnaseq_undef/sample2/feature_counts_2/sample_feature.out' 2021-04-20T17:10:42,444 adding 'sequana/resources/testing/rnadiff/README.txt' 2021-04-20T17:10:42,445 adding 'sequana/resources/testing/rnadiff/__init__.py' 2021-04-20T17:10:42,446 adding 'sequana/resources/testing/rnadiff/design.csv' 2021-04-20T17:10:42,448 adding 'sequana/resources/testing/rnadiff/design_twocond.csv' 2021-04-20T17:10:42,571 adding 'sequana/resources/testing/rnadiff/rnadiff_bowtie.csv' 2021-04-20T17:10:42,685 adding 'sequana/resources/testing/rnadiff/rnadiff_salmon.csv' 2021-04-20T17:10:42,689 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_1/__init__.py' 2021-04-20T17:10:42,940 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls' 2021-04-20T17:10:42,947 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/__init__.py' 2021-04-20T17:10:43,071 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/Lepto.gff' 2021-04-20T17:10:43,084 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/__init__.py' 2021-04-20T17:10:43,115 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/counts.csv' 2021-04-20T17:10:43,117 adding 'sequana/resources/testing/rnadiff/rnadiff_onecond_ex1/design.csv' 2021-04-20T17:10:43,227 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Complemented_csrA_vs_Mut_csrA_degs_DESeq2.csv' 2021-04-20T17:10:43,343 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Complemented_csrA_vs_WT_degs_DESeq2.csv' 2021-04-20T17:10:43,449 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/Mut_csrA_vs_WT_degs_DESeq2.csv' 2021-04-20T17:10:43,541 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_normed.csv' 2021-04-20T17:10:43,600 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_raw.csv' 2021-04-20T17:10:43,704 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/counts_vst_norm.csv' 2021-04-20T17:10:44,075 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex1/overall_dds.csv' 2021-04-20T17:10:44,187 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Complemented_csrA_vs_Mut_csrA_degs_DESeq2.csv' 2021-04-20T17:10:44,292 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Complemented_csrA_vs_WT_degs_DESeq2.csv' 2021-04-20T17:10:44,397 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/Mut_csrA_vs_WT_degs_DESeq2.csv' 2021-04-20T17:10:44,401 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/__init__.py' 2021-04-20T17:10:44,451 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_normed.csv' 2021-04-20T17:10:44,498 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_raw.csv' 2021-04-20T17:10:44,559 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/counts_vst_norm.csv' 2021-04-20T17:10:44,930 adding 'sequana/resources/testing/rnadiff/rnadiff_twocond_ex2/overall_dds.csv' 2021-04-20T17:10:44,941 adding 'sequana/rules/README.rst' 2021-04-20T17:10:44,943 adding 'sequana/rules/__init__.py' 2021-04-20T17:10:44,945 adding 'sequana/rules/Adapters/__init__.py' 2021-04-20T17:10:44,948 adding 'sequana/rules/Adapters/adapter_removal/adapter_removal.rules' 2021-04-20T17:10:44,950 adding 'sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules' 2021-04-20T17:10:44,952 adding 'sequana/rules/Adapters/cutadapt/cutadapt.rules' 2021-04-20T17:10:44,955 adding 'sequana/rules/Adapters/identify_adapters/identify_adapters.rules' 2021-04-20T17:10:44,957 adding 'sequana/rules/Assembly/__init__.py' 2021-04-20T17:10:44,959 adding 'sequana/rules/Assembly/busco/busco.rules' 2021-04-20T17:10:44,961 adding 'sequana/rules/Assembly/busco_analysis/busco_analysis.rules' 2021-04-20T17:10:44,963 adding 'sequana/rules/Assembly/canu/canu.rules' 2021-04-20T17:10:44,966 adding 'sequana/rules/Assembly/spades/spades.rules' 2021-04-20T17:10:44,968 adding 'sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules' 2021-04-20T17:10:44,970 adding 'sequana/rules/DupRadar/DupRadar.rules' 2021-04-20T17:10:44,973 adding 'sequana/rules/Pacbio/__init__.py' 2021-04-20T17:10:44,975 adding 'sequana/rules/SARTools/SARTools.rules' 2021-04-20T17:10:44,977 adding 'sequana/rules/SnpEff/__init__.py' 2021-04-20T17:10:44,979 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2021-04-20T17:10:44,981 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2021-04-20T17:10:44,984 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2021-04-20T17:10:44,986 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2021-04-20T17:10:44,988 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2021-04-20T17:10:44,990 adding 'sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules' 2021-04-20T17:10:44,992 adding 'sequana/rules/Utils/__init__.py' 2021-04-20T17:10:44,995 adding 'sequana/rules/Utils/dynamic_copy/dynamic_copy.rules' 2021-04-20T17:10:44,998 adding 'sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules' 2021-04-20T17:10:45,000 adding 'sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules' 2021-04-20T17:10:45,003 adding 'sequana/rules/Variant_caller/__init__.py' 2021-04-20T17:10:45,005 adding 'sequana/rules/Variant_caller/freebayes/freebayes.rules' 2021-04-20T17:10:45,010 adding 'sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2021-04-20T17:10:45,013 adding 'sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2021-04-20T17:10:45,016 adding 'sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules' 2021-04-20T17:10:45,019 adding 'sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2021-04-20T17:10:45,021 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2021-04-20T17:10:45,024 adding 'sequana/rules/bam_analysis/bam_analysis.rules' 2021-04-20T17:10:45,027 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2021-04-20T17:10:45,029 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2021-04-20T17:10:45,032 adding 'sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules' 2021-04-20T17:10:45,035 adding 'sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules' 2021-04-20T17:10:45,037 adding 'sequana/rules/bowtie2_index/bowtie2_index.rules' 2021-04-20T17:10:45,040 adding 'sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules' 2021-04-20T17:10:45,042 adding 'sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules' 2021-04-20T17:10:45,044 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2021-04-20T17:10:45,046 adding 'sequana/rules/bwa_index/bwa_index.rules' 2021-04-20T17:10:45,049 adding 'sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules' 2021-04-20T17:10:45,051 adding 'sequana/rules/chipuanar/chipuanar.rules' 2021-04-20T17:10:45,054 adding 'sequana/rules/codecs/__init__.py' 2021-04-20T17:10:45,057 adding 'sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules' 2021-04-20T17:10:45,061 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2021-04-20T17:10:45,064 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2021-04-20T17:10:45,066 adding 'sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules' 2021-04-20T17:10:45,068 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2021-04-20T17:10:45,070 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2021-04-20T17:10:45,073 adding 'sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules' 2021-04-20T17:10:45,075 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2021-04-20T17:10:45,077 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2021-04-20T17:10:45,080 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2021-04-20T17:10:45,082 adding 'sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules' 2021-04-20T17:10:45,085 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2021-04-20T17:10:45,087 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2021-04-20T17:10:45,089 adding 'sequana/rules/conda/conda.rules' 2021-04-20T17:10:45,092 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2021-04-20T17:10:45,094 adding 'sequana/rules/dag/dag.rules' 2021-04-20T17:10:45,096 adding 'sequana/rules/deeptools/__init__.py' 2021-04-20T17:10:45,099 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2021-04-20T17:10:45,101 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2021-04-20T17:10:45,103 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2021-04-20T17:10:45,106 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2021-04-20T17:10:45,108 adding 'sequana/rules/digital_normalisation/digital_normalisation.rules' 2021-04-20T17:10:45,110 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2021-04-20T17:10:45,113 adding 'sequana/rules/falco_dynamic/falco_dynamic.rules' 2021-04-20T17:10:45,115 adding 'sequana/rules/fastp/fastp.rules' 2021-04-20T17:10:45,117 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2021-04-20T17:10:45,119 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2021-04-20T17:10:45,121 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2021-04-20T17:10:45,124 adding 'sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules' 2021-04-20T17:10:45,126 adding 'sequana/rules/fastqc_dynamic/fastqc_dynamic.rules' 2021-04-20T17:10:45,128 adding 'sequana/rules/feature_counts/feature_counts.rules' 2021-04-20T17:10:45,130 adding 'sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules' 2021-04-20T17:10:45,132 adding 'sequana/rules/format_contigs/format_contigs.rules' 2021-04-20T17:10:45,134 adding 'sequana/rules/idr/__init__.py' 2021-04-20T17:10:45,136 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2021-04-20T17:10:45,347 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2021-04-20T17:10:45,351 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2021-04-20T17:10:45,355 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2021-04-20T17:10:45,359 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2021-04-20T17:10:45,362 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2021-04-20T17:10:45,364 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2021-04-20T17:10:45,366 adding 'sequana/rules/igvtools/igvtools.rules' 2021-04-20T17:10:45,369 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2021-04-20T17:10:45,372 adding 'sequana/rules/kraken/1.0/kraken.rules' 2021-04-20T17:10:45,374 adding 'sequana/rules/kraken/1.1/kraken.rules' 2021-04-20T17:10:45,376 adding 'sequana/rules/macs3_dynamic/macs3_dynamic.rules' 2021-04-20T17:10:45,379 adding 'sequana/rules/mapping_analysis/mapping_analysis.rules' 2021-04-20T17:10:45,381 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2021-04-20T17:10:45,383 adding 'sequana/rules/multiqc/multiqc.rules' 2021-04-20T17:10:45,385 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2021-04-20T17:10:45,387 adding 'sequana/rules/multiqc2/multiqc2.rules' 2021-04-20T17:10:45,389 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2021-04-20T17:10:45,391 adding 'sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules' 2021-04-20T17:10:45,393 adding 'sequana/rules/picard-tools/__init__.py' 2021-04-20T17:10:45,395 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2021-04-20T17:10:45,397 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2021-04-20T17:10:45,399 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2021-04-20T17:10:45,401 adding 'sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules' 2021-04-20T17:10:45,403 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2021-04-20T17:10:45,405 adding 'sequana/rules/preSARTools/preSARTools.rules' 2021-04-20T17:10:45,407 adding 'sequana/rules/prokka/prokka.rules' 2021-04-20T17:10:45,409 adding 'sequana/rules/quast/quast.rules' 2021-04-20T17:10:45,411 adding 'sequana/rules/remove_blacklist/remove_blacklist.rules' 2021-04-20T17:10:45,413 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2021-04-20T17:10:45,415 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2021-04-20T17:10:45,418 adding 'sequana/rules/rulegraph/rulegraph.rules' 2021-04-20T17:10:45,420 adding 'sequana/rules/salmon_index/salmon_index.rules' 2021-04-20T17:10:45,422 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2021-04-20T17:10:45,425 adding 'sequana/rules/sambamba/__init__.py' 2021-04-20T17:10:45,641 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2021-04-20T17:10:45,645 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2021-04-20T17:10:45,649 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2021-04-20T17:10:45,652 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2021-04-20T17:10:45,656 adding 'sequana/rules/sequana_coverage/sequana_coverage.rules' 2021-04-20T17:10:45,660 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2021-04-20T17:10:45,662 adding 'sequana/rules/spp/spp.rules' 2021-04-20T17:10:45,664 adding 'sequana/rules/star_index/star_index.rules' 2021-04-20T17:10:45,666 adding 'sequana/rules/star_mapping/star_mapping.rules' 2021-04-20T17:10:45,669 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2021-04-20T17:10:45,670 adding 'sequana/rules/tophat_mapping/tophat_mapping.rules' 2021-04-20T17:10:45,672 adding 'sequana/scripts/__init__.py' 2021-04-20T17:10:45,674 adding 'sequana/scripts/bam_splitter.py' 2021-04-20T17:10:45,676 adding 'sequana/scripts/browser.py' 2021-04-20T17:10:45,678 adding 'sequana/scripts/compressor.py' 2021-04-20T17:10:45,681 adding 'sequana/scripts/coverage.py' 2021-04-20T17:10:45,683 adding 'sequana/scripts/fixR1R2.py' 2021-04-20T17:10:45,686 adding 'sequana/scripts/lane_merging.py' 2021-04-20T17:10:45,690 adding 'sequana/scripts/main.py' 2021-04-20T17:10:45,692 adding 'sequana/scripts/mapping.py' 2021-04-20T17:10:45,694 adding 'sequana/scripts/start_pipeline.py' 2021-04-20T17:10:45,696 adding 'sequana/scripts/substractor.py' 2021-04-20T17:10:45,699 adding 'sequana/scripts/taxonomy.py' 2021-04-20T17:10:45,701 adding 'sequana/scripts/tools.py' 2021-04-20T17:10:45,703 adding 'sequana/scripts/vcf_filter.py' 2021-04-20T17:10:45,705 adding 'sequana/sphinxext/__init__.py' 2021-04-20T17:10:45,706 adding 'sequana/sphinxext/sequana_pipeline.py' 2021-04-20T17:10:45,708 adding 'sequana/sphinxext/snakemakerule.py' 2021-04-20T17:10:45,710 adding 'sequana/utils/__init__.py' 2021-04-20T17:10:45,712 adding 'sequana/utils/config.py' 2021-04-20T17:10:45,714 adding 'sequana/utils/datatables_js.py' 2021-04-20T17:10:45,716 adding 'sequana/utils/df2html.py' 2021-04-20T17:10:45,718 adding 'sequana/utils/tree.py' 2021-04-20T17:10:45,720 adding 'sequana/viz/__init__.py' 2021-04-20T17:10:45,722 adding 'sequana/viz/anova.py' 2021-04-20T17:10:45,723 adding 'sequana/viz/boxplot.py' 2021-04-20T17:10:45,725 adding 'sequana/viz/clusterisation.py' 2021-04-20T17:10:45,727 adding 'sequana/viz/core.py' 2021-04-20T17:10:45,730 adding 'sequana/viz/corrplot.py' 2021-04-20T17:10:45,732 adding 'sequana/viz/dendogram.py' 2021-04-20T17:10:45,736 adding 'sequana/viz/heatmap.py' 2021-04-20T17:10:45,738 adding 'sequana/viz/hinton.py' 2021-04-20T17:10:45,740 adding 'sequana/viz/hist2d.py' 2021-04-20T17:10:45,742 adding 'sequana/viz/imshow.py' 2021-04-20T17:10:45,744 adding 'sequana/viz/isomap.py' 2021-04-20T17:10:45,746 adding 'sequana/viz/linkage.py' 2021-04-20T17:10:45,748 adding 'sequana/viz/mds.py' 2021-04-20T17:10:45,750 adding 'sequana/viz/pca.py' 2021-04-20T17:10:45,752 adding 'sequana/viz/plotly.py' 2021-04-20T17:10:45,754 adding 'sequana/viz/scatter.py' 2021-04-20T17:10:45,756 adding 'sequana/viz/venn.py' 2021-04-20T17:10:45,758 adding 'sequana/viz/volcano.py' 2021-04-20T17:10:45,761 adding 'sequana-0.11.1.dist-info/LICENSE' 2021-04-20T17:10:45,763 adding 'sequana-0.11.1.dist-info/METADATA' 2021-04-20T17:10:45,764 adding 'sequana-0.11.1.dist-info/WHEEL' 2021-04-20T17:10:45,765 adding 'sequana-0.11.1.dist-info/entry_points.txt' 2021-04-20T17:10:45,766 adding 'sequana-0.11.1.dist-info/top_level.txt' 2021-04-20T17:10:45,774 adding 'sequana-0.11.1.dist-info/RECORD' 2021-04-20T17:10:46,071 removing build/bdist.linux-armv7l/wheel 2021-04-20T17:10:46,501 Building wheel for sequana (setup.py): finished with status 'done' 2021-04-20T17:10:46,698 Created wheel for sequana: filename=sequana-0.11.1-py3-none-any.whl size=18510528 sha256=eccb28d0803214ecf00e4dce7cb445b48ea1f2b2d49cf8019d44168ed79f6c3d 2021-04-20T17:10:46,699 Stored in directory: /tmp/pip-ephem-wheel-cache-u436i0j0/wheels/38/27/c2/16fb77f2787ad26ae3efee9721e46f4d0b9905c5c3abe09c41 2021-04-20T17:10:46,739 Successfully built sequana 2021-04-20T17:10:47,315 Removed build tracker: '/tmp/pip-req-tracker-w79r5c1t'