2021-04-22T23:39:26,889 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-04-22T23:39:27,604 Created temporary directory: /tmp/pip-ephem-wheel-cache-_1_d9ofi 2021-04-22T23:39:27,609 Created temporary directory: /tmp/pip-req-tracker-8h8wy2lj 2021-04-22T23:39:27,610 Initialized build tracking at /tmp/pip-req-tracker-8h8wy2lj 2021-04-22T23:39:27,611 Created build tracker: /tmp/pip-req-tracker-8h8wy2lj 2021-04-22T23:39:27,611 Entered build tracker: /tmp/pip-req-tracker-8h8wy2lj 2021-04-22T23:39:27,612 Created temporary directory: /tmp/pip-wheel-aabv33bj 2021-04-22T23:39:27,674 1 location(s) to search for versions of humann: 2021-04-22T23:39:27,674 * https://pypi.org/simple/humann/ 2021-04-22T23:39:27,675 Fetching project page and analyzing links: https://pypi.org/simple/humann/ 2021-04-22T23:39:27,677 Getting page https://pypi.org/simple/humann/ 2021-04-22T23:39:27,682 Found index url https://pypi.org/simple 2021-04-22T23:39:27,994 Found link https://files.pythonhosted.org/packages/7e/3e/3b393eba794e3a05678192a46d6aefb86ae30b43c667b5b73afc65174b6c/humann-3.0.0-alpha.tar.gz#sha256=c78d1fc7e62b0a4633fda02d074469be179a508c781e996019ffeaa1a7ce7af6 (from https://pypi.org/simple/humann/), version: 3.0.0-alpha 2021-04-22T23:39:27,995 Found link https://files.pythonhosted.org/packages/bd/4e/54eb4908295e3ad3f7be801be19929b7094e32ab3e2d247086e74a1fd45f/humann-3.0.0a1.tar.gz#sha256=b18ad84daedbcb1afc1414375e745c952c6d69365c8a5d93f60d028b7e530409 (from https://pypi.org/simple/humann/), version: 3.0.0a1 2021-04-22T23:39:27,996 Found link https://files.pythonhosted.org/packages/9d/57/08aa836c56651f0a4e03f5883860a803bc4aabb2d1357df5f0d6f0841edf/humann-3.0.0a2.tar.gz#sha256=85d8da2f98d37f7d608a87f53f700da4756ac2317afec257c6303d0cd81c6eae (from https://pypi.org/simple/humann/), version: 3.0.0a2 2021-04-22T23:39:27,997 Found link https://files.pythonhosted.org/packages/40/3a/6cc67078d99ffb75ad12ae6d9506f54240b36b798ba34a3740ade52b16d0/humann-3.0.0a3.tar.gz#sha256=d9e537513350d6fcd0bb55559623e1651f90f93733433db90da654ef5ba00aa1 (from https://pypi.org/simple/humann/), version: 3.0.0a3 2021-04-22T23:39:27,998 Found link https://files.pythonhosted.org/packages/d6/65/894e7a8de495de13e8ecf3b7c5cddee491aa11b5511c0c8f71e1d71a924b/humann-3.0.0a4.tar.gz#sha256=300e91dee00c5f4cb0f5a529164be1d7332fdbd288685a865074f48c0cb3459f (from https://pypi.org/simple/humann/), version: 3.0.0a4 2021-04-22T23:39:27,1000 Found link https://files.pythonhosted.org/packages/36/b5/9bc5bf8c3dc5fe5db3fb10337d5a1381eb4e01b127054e7b65cc54bf66d3/humann-3.0.0.tar.gz#sha256=e9dd31f95f3402d87068ad9288d061b17e5369044aca715502feda71b7633fa4 (from https://pypi.org/simple/humann/), version: 3.0.0 2021-04-22T23:39:28,032 Given no hashes to check 1 links for project 'humann': discarding no candidates 2021-04-22T23:39:28,064 Collecting humann==3.0.0 2021-04-22T23:39:28,068 Created temporary directory: /tmp/pip-unpack-40a6o55i 2021-04-22T23:39:33,472 Downloading humann-3.0.0.tar.gz (106.0 MB) 2021-04-22T23:40:12,500 Added humann==3.0.0 from https://files.pythonhosted.org/packages/36/b5/9bc5bf8c3dc5fe5db3fb10337d5a1381eb4e01b127054e7b65cc54bf66d3/humann-3.0.0.tar.gz#sha256=e9dd31f95f3402d87068ad9288d061b17e5369044aca715502feda71b7633fa4 to build tracker '/tmp/pip-req-tracker-8h8wy2lj' 2021-04-22T23:40:12,504 Running setup.py (path:/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/setup.py) egg_info for package humann 2021-04-22T23:40:12,506 Created temporary directory: /tmp/pip-pip-egg-info-0ubkjqys 2021-04-22T23:40:12,507 Running command python setup.py egg_info 2021-04-22T23:40:14,960 running egg_info 2021-04-22T23:40:14,965 creating /tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info 2021-04-22T23:40:14,970 writing entry points to /tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info/entry_points.txt 2021-04-22T23:40:14,973 writing /tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info/PKG-INFO 2021-04-22T23:40:14,979 writing top-level names to /tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info/top_level.txt 2021-04-22T23:40:14,982 writing dependency_links to /tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info/dependency_links.txt 2021-04-22T23:40:14,987 writing manifest file '/tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info/SOURCES.txt' 2021-04-22T23:40:15,421 reading manifest file '/tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info/SOURCES.txt' 2021-04-22T23:40:15,425 reading manifest template 'MANIFEST.in' 2021-04-22T23:40:15,430 warning: no files found matching 'humann/tools/README.txt' 2021-04-22T23:40:15,431 warning: no files found matching 'humann/maintenance/README.md' 2021-04-22T23:40:15,432 warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' 2021-04-22T23:40:15,434 no previously-included directories found matching 'humann/quantify/MinPath' 2021-04-22T23:40:15,436 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' 2021-04-22T23:40:15,440 warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' 2021-04-22T23:40:15,443 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' 2021-04-22T23:40:15,446 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' 2021-04-22T23:40:15,448 warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' 2021-04-22T23:40:15,451 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' 2021-04-22T23:40:15,454 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' 2021-04-22T23:40:15,456 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' 2021-04-22T23:40:15,459 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' 2021-04-22T23:40:15,462 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' 2021-04-22T23:40:15,464 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' 2021-04-22T23:40:15,467 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' 2021-04-22T23:40:15,470 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' 2021-04-22T23:40:15,472 warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' 2021-04-22T23:40:15,475 warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' 2021-04-22T23:40:15,478 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' 2021-04-22T23:40:15,480 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' 2021-04-22T23:40:15,504 writing manifest file '/tmp/pip-pip-egg-info-0ubkjqys/humann.egg-info/SOURCES.txt' 2021-04-22T23:40:15,654 Source in /tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b has version 3.0.0, which satisfies requirement humann==3.0.0 from https://files.pythonhosted.org/packages/36/b5/9bc5bf8c3dc5fe5db3fb10337d5a1381eb4e01b127054e7b65cc54bf66d3/humann-3.0.0.tar.gz#sha256=e9dd31f95f3402d87068ad9288d061b17e5369044aca715502feda71b7633fa4 2021-04-22T23:40:15,656 Removed humann==3.0.0 from https://files.pythonhosted.org/packages/36/b5/9bc5bf8c3dc5fe5db3fb10337d5a1381eb4e01b127054e7b65cc54bf66d3/humann-3.0.0.tar.gz#sha256=e9dd31f95f3402d87068ad9288d061b17e5369044aca715502feda71b7633fa4 from build tracker '/tmp/pip-req-tracker-8h8wy2lj' 2021-04-22T23:40:15,664 Created temporary directory: /tmp/pip-unpack-obz19mk3 2021-04-22T23:40:15,665 Building wheels for collected packages: humann 2021-04-22T23:40:15,675 Created temporary directory: /tmp/pip-wheel-0go1tu_p 2021-04-22T23:40:15,676 Building wheel for humann (setup.py): started 2021-04-22T23:40:15,676 Destination directory: /tmp/pip-wheel-0go1tu_p 2021-04-22T23:40:15,677 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0go1tu_p 2021-04-22T23:40:18,079 running bdist_wheel 2021-04-22T23:40:18,091 running build 2021-04-22T23:40:18,092 running build_py 2021-04-22T23:40:18,422 creating build 2021-04-22T23:40:18,423 creating build/lib 2021-04-22T23:40:18,424 creating build/lib/humann 2021-04-22T23:40:18,427 copying humann/store.py -> build/lib/humann 2021-04-22T23:40:18,436 copying humann/config.py -> build/lib/humann 2021-04-22T23:40:18,443 copying humann/check.py -> build/lib/humann 2021-04-22T23:40:18,449 copying humann/utilities.py -> build/lib/humann 2021-04-22T23:40:18,459 copying humann/__init__.py -> build/lib/humann 2021-04-22T23:40:18,464 copying humann/humann.py -> build/lib/humann 2021-04-22T23:40:18,480 creating build/lib/humann/tests 2021-04-22T23:40:18,483 copying humann/tests/functional_tests_tools.py -> build/lib/humann/tests 2021-04-22T23:40:18,489 copying humann/tests/advanced_tests_translated_search.py -> build/lib/humann/tests 2021-04-22T23:40:18,495 copying humann/tests/advanced_tests_quantify_modules.py -> build/lib/humann/tests 2021-04-22T23:40:18,504 copying humann/tests/functional_tests_humann.py -> build/lib/humann/tests 2021-04-22T23:40:18,511 copying humann/tests/basic_tests_nucleotide_search.py -> build/lib/humann/tests 2021-04-22T23:40:18,518 copying humann/tests/functional_tests_biom_tools.py -> build/lib/humann/tests 2021-04-22T23:40:18,525 copying humann/tests/advanced_tests_store.py -> build/lib/humann/tests 2021-04-22T23:40:18,533 copying humann/tests/basic_tests_quantify_modules.py -> build/lib/humann/tests 2021-04-22T23:40:18,541 copying humann/tests/utils.py -> build/lib/humann/tests 2021-04-22T23:40:18,547 copying humann/tests/basic_tests_store.py -> build/lib/humann/tests 2021-04-22T23:40:18,558 copying humann/tests/humann_test.py -> build/lib/humann/tests 2021-04-22T23:40:18,564 copying humann/tests/advanced_tests_blastx_coverage.py -> build/lib/humann/tests 2021-04-22T23:40:18,571 copying humann/tests/__init__.py -> build/lib/humann/tests 2021-04-22T23:40:18,576 copying humann/tests/basic_tests_utilities.py -> build/lib/humann/tests 2021-04-22T23:40:18,583 copying humann/tests/advanced_tests_nucleotide_search.py -> build/lib/humann/tests 2021-04-22T23:40:18,591 copying humann/tests/advanced_tests_utilities.py -> build/lib/humann/tests 2021-04-22T23:40:18,597 copying humann/tests/functional_tests_biom_humann.py -> build/lib/humann/tests 2021-04-22T23:40:18,603 copying humann/tests/advanced_tests_quantify_families.py -> build/lib/humann/tests 2021-04-22T23:40:18,609 copying humann/tests/cfg.py -> build/lib/humann/tests 2021-04-22T23:40:18,619 creating build/lib/humann/search 2021-04-22T23:40:18,622 copying humann/search/translated.py -> build/lib/humann/search 2021-04-22T23:40:18,630 copying humann/search/nucleotide.py -> build/lib/humann/search 2021-04-22T23:40:18,637 copying humann/search/prescreen.py -> build/lib/humann/search 2021-04-22T23:40:18,644 copying humann/search/__init__.py -> build/lib/humann/search 2021-04-22T23:40:18,648 copying humann/search/pick_frames.py -> build/lib/humann/search 2021-04-22T23:40:18,655 copying humann/search/blastx_coverage.py -> build/lib/humann/search 2021-04-22T23:40:18,664 creating build/lib/humann/quantify 2021-04-22T23:40:18,666 copying humann/quantify/families.py -> build/lib/humann/quantify 2021-04-22T23:40:18,671 copying humann/quantify/modules.py -> build/lib/humann/quantify 2021-04-22T23:40:18,677 copying humann/quantify/chi2cdf.py -> build/lib/humann/quantify 2021-04-22T23:40:18,682 copying humann/quantify/xipe.py -> build/lib/humann/quantify 2021-04-22T23:40:18,689 copying humann/quantify/__init__.py -> build/lib/humann/quantify 2021-04-22T23:40:18,693 copying humann/quantify/MinPath12hmp.py -> build/lib/humann/quantify 2021-04-22T23:40:18,708 creating build/lib/humann/tools 2021-04-22T23:40:18,710 copying humann/tools/rna_dna_norm.py -> build/lib/humann/tools 2021-04-22T23:40:18,716 copying humann/tools/reduce_table.py -> build/lib/humann/tools 2021-04-22T23:40:18,722 copying humann/tools/split_stratified_table.py -> build/lib/humann/tools 2021-04-22T23:40:18,727 copying humann/tools/humann_databases.py -> build/lib/humann/tools 2021-04-22T23:40:18,734 copying humann/tools/humann_config.py -> build/lib/humann/tools 2021-04-22T23:40:18,741 copying humann/tools/humann_expand_results_taxonomy.py -> build/lib/humann/tools 2021-04-22T23:40:18,748 copying humann/tools/genefamilies_genus_level.py -> build/lib/humann/tools 2021-04-22T23:40:18,754 copying humann/tools/humann_humann1_kegg.py -> build/lib/humann/tools 2021-04-22T23:40:18,762 copying humann/tools/humann_barplot.py -> build/lib/humann/tools 2021-04-22T23:40:18,771 copying humann/tools/rename_table.py -> build/lib/humann/tools 2021-04-22T23:40:18,778 copying humann/tools/join_tables.py -> build/lib/humann/tools 2021-04-22T23:40:18,785 copying humann/tools/build_custom_database.py -> build/lib/humann/tools 2021-04-22T23:40:18,792 copying humann/tools/strain_profiler.py -> build/lib/humann/tools 2021-04-22T23:40:18,797 copying humann/tools/util.py -> build/lib/humann/tools 2021-04-22T23:40:18,803 copying humann/tools/renorm_table.py -> build/lib/humann/tools 2021-04-22T23:40:18,809 copying humann/tools/humann_benchmark.py -> build/lib/humann/tools 2021-04-22T23:40:18,814 copying humann/tools/infer_taxonomy.py -> build/lib/humann/tools 2021-04-22T23:40:18,822 copying humann/tools/humann_associate.py -> build/lib/humann/tools 2021-04-22T23:40:18,829 copying humann/tools/split_table.py -> build/lib/humann/tools 2021-04-22T23:40:18,836 copying humann/tools/__init__.py -> build/lib/humann/tools 2021-04-22T23:40:18,841 copying humann/tools/regroup_table.py -> build/lib/humann/tools 2021-04-22T23:40:18,849 copying humann/tools/merge_abundance.py -> build/lib/humann/tools 2021-04-22T23:40:18,906 copying humann/humann.cfg -> build/lib/humann 2021-04-22T23:40:18,911 creating build/lib/humann/data 2021-04-22T23:40:18,912 creating build/lib/humann/data/pathways 2021-04-22T23:40:18,915 copying humann/data/pathways/metacyc_structured_pathways_filtered -> build/lib/humann/data/pathways 2021-04-22T23:40:18,938 copying humann/data/pathways/metacyc_pathways_to_organisms -> build/lib/humann/data/pathways 2021-04-22T23:40:18,964 copying humann/data/pathways/unipathway_pathways -> build/lib/humann/data/pathways 2021-04-22T23:40:19,067 copying humann/data/pathways/metacyc_pathways_structured_filtered -> build/lib/humann/data/pathways 2021-04-22T23:40:19,088 copying humann/data/pathways/unipathway_uniprots.uniref.bz2 -> build/lib/humann/data/pathways 2021-04-22T23:40:19,194 copying humann/data/pathways/metacyc_pathways -> build/lib/humann/data/pathways 2021-04-22T23:40:19,223 copying humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/lib/humann/data/pathways 2021-04-22T23:40:24,479 copying humann/data/pathways/metacyc_pathways_structured -> build/lib/humann/data/pathways 2021-04-22T23:40:24,510 creating build/lib/humann/data/misc 2021-04-22T23:40:24,512 copying humann/data/misc/map_kegg-pwy_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,519 copying humann/data/misc/map_metacyc-pwy_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,528 copying humann/data/misc/map_pfam_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,553 copying humann/data/misc/map_ko_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,576 copying humann/data/misc/map_go_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,626 copying humann/data/misc/map_kegg-mdl_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,646 copying humann/data/misc/map_level4ec_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,659 copying humann/data/misc/KeggOrgId2OrgNameTable.txt -> build/lib/humann/data/misc 2021-04-22T23:40:24,678 copying humann/data/misc/README.txt -> build/lib/humann/data/misc 2021-04-22T23:40:24,683 copying humann/data/misc/map_metacyc-rxn_name.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,703 copying humann/data/misc/map_transporter_uniref50.txt.gz -> build/lib/humann/data/misc 2021-04-22T23:40:24,708 copying humann/data/misc/map_uniref50_name.txt.bz2 -> build/lib/humann/data/misc 2021-04-22T23:40:27,781 creating build/lib/humann/data/uniref_DEMO 2021-04-22T23:40:27,783 copying humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna -> build/lib/humann/data/uniref_DEMO 2021-04-22T23:40:27,791 copying humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd -> build/lib/humann/data/uniref_DEMO 2021-04-22T23:40:27,801 creating build/lib/humann/data/chocophlan_DEMO 2021-04-22T23:40:27,804 copying humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v296_201901b.ffn.gz -> build/lib/humann/data/chocophlan_DEMO 2021-04-22T23:40:28,384 copying humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v296_201901b.ffn.gz -> build/lib/humann/data/chocophlan_DEMO 2021-04-22T23:40:28,740 creating build/lib/humann/tests/data 2021-04-22T23:40:28,743 copying humann/tests/data/demo_genefamilies_with_names.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,774 copying humann/tests/data/demo_genefamilies.biom -> build/lib/humann/tests/data 2021-04-22T23:40:28,811 copying humann/tests/data/demo_genefamilies.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,839 copying humann/tests/data/id_mapping_gene_table.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,845 copying humann/tests/data/multi_sample_genefamilies_sample1.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,850 copying humann/tests/data/file.fastq -> build/lib/humann/tests/data 2021-04-22T23:40:28,857 copying humann/tests/data/genefamilies_biom_match.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,864 copying humann/tests/data/test_pathways.dat -> build/lib/humann/tests/data 2021-04-22T23:40:28,875 copying humann/tests/data/2_aligned_3_unaligned.sam -> build/lib/humann/tests/data 2021-04-22T23:40:28,883 copying humann/tests/data/convert_file.fasta -> build/lib/humann/tests/data 2021-04-22T23:40:28,891 copying humann/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/lib/humann/tests/data 2021-04-22T23:40:28,902 copying humann/tests/data/multi_sample_genefamilies_sample2.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,910 copying humann/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:28,918 copying humann/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/lib/humann/tests/data 2021-04-22T23:40:28,929 copying humann/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:28,937 copying humann/tests/data/gene_families.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,944 copying humann/tests/data/genefamilies.biom -> build/lib/humann/tests/data 2021-04-22T23:40:28,956 copying humann/tests/data/multi_sample_genefamilies.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:28,964 copying humann/tests/data/demo.fastq -> build/lib/humann/tests/data 2021-04-22T23:40:29,719 copying humann/tests/data/rapsearch2_output_without_header.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:29,728 copying humann/tests/data/usearch_with_uniref50_output.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:29,735 copying humann/tests/data/usearch_output.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:29,741 copying humann/tests/data/file_single_line_sequences.fasta -> build/lib/humann/tests/data 2021-04-22T23:40:29,747 copying humann/tests/data/id_mapping.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:29,752 copying humann/tests/data/annotations.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:29,758 copying humann/tests/data/demo_pathabundance_with_names.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:29,765 copying humann/tests/data/demo.fasta -> build/lib/humann/tests/data 2021-04-22T23:40:30,088 copying humann/tests/data/test_pathways_results.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:30,094 copying humann/tests/data/reactions.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:30,101 copying humann/tests/data/file_space_identifier.fastq -> build/lib/humann/tests/data 2021-04-22T23:40:30,109 copying humann/tests/data/convert_file_at_character.fastq -> build/lib/humann/tests/data 2021-04-22T23:40:30,116 copying humann/tests/data/file.fasta -> build/lib/humann/tests/data 2021-04-22T23:40:30,123 copying humann/tests/data/file.bam -> build/lib/humann/tests/data 2021-04-22T23:40:30,128 copying humann/tests/data/convert_file_pick_frames.fasta -> build/lib/humann/tests/data 2021-04-22T23:40:30,134 copying humann/tests/data/gene_families_uniref50_with_names.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:30,142 copying humann/tests/data/multi_sample_genefamilies.biom -> build/lib/humann/tests/data 2021-04-22T23:40:30,153 copying humann/tests/data/small_map_uniref50_name.txt.gz -> build/lib/humann/tests/data 2021-04-22T23:40:30,161 copying humann/tests/data/file_without_header_with_tags.sam -> build/lib/humann/tests/data 2021-04-22T23:40:30,170 copying humann/tests/data/demo.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:30,187 copying humann/tests/data/file_no_space_identifier.fastq -> build/lib/humann/tests/data 2021-04-22T23:40:30,194 copying humann/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:30,201 copying humann/tests/data/rapsearch2_output_with_header.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:30,208 copying humann/tests/data/demo.sam -> build/lib/humann/tests/data 2021-04-22T23:40:30,468 copying humann/tests/data/demo_pathcoverage_with_names.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:30,473 copying humann/tests/data/demo_metaphlan_bugs_list.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:30,479 copying humann/tests/data/convert_file_multiline.fasta -> build/lib/humann/tests/data 2021-04-22T23:40:30,486 copying humann/tests/data/test_pathways_flat.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:30,494 copying humann/tests/data/file_without_header.sam -> build/lib/humann/tests/data 2021-04-22T23:40:30,501 copying humann/tests/data/file_with_header.sam -> build/lib/humann/tests/data 2021-04-22T23:40:30,508 copying humann/tests/data/id_mapping_coverage_filter.tsv -> build/lib/humann/tests/data 2021-04-22T23:40:30,516 copying humann/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/lib/humann/tests/data 2021-04-22T23:40:30,523 copying humann/tests/data/convert_file.fastq -> build/lib/humann/tests/data 2021-04-22T23:40:30,531 copying humann/tests/data/annotations.sam -> build/lib/humann/tests/data 2021-04-22T23:40:30,538 creating build/lib/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:30,541 copying humann/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/lib/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:30,550 copying humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/lib/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:30,562 copying humann/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/lib/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:30,570 copying humann/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/lib/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:30,580 copying humann/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/lib/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:30,719 copying humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/lib/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:30,726 creating build/lib/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:30,729 copying humann/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/lib/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:30,738 copying humann/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/lib/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:30,745 copying humann/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/lib/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:30,753 copying humann/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/lib/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:30,759 creating build/lib/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:30,762 copying humann/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:30,770 copying humann/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:30,797 copying humann/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:30,803 copying humann/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:30,810 copying humann/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/lib/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:30,816 creating build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,819 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,826 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,833 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,844 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,851 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,858 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,865 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,872 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,879 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,886 copying humann/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,895 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,902 copying humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/lib/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:30,909 creating build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,912 copying humann/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,918 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,923 copying humann/tests/data/tooltest-rename_table/rename_table-input.biom -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,932 copying humann/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,938 copying humann/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,945 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,953 copying humann/tests/data/tooltest-rename_table/rename_table-input.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,961 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,968 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,976 copying humann/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,983 copying humann/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,991 copying humann/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:30,998 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:31,006 copying humann/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:31,013 copying humann/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:31,021 copying humann/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/lib/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:31,028 creating build/lib/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:31,032 copying humann/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/lib/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:31,040 copying humann/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/lib/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:31,048 copying humann/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/lib/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:31,054 creating build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,057 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,066 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,073 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,081 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,088 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,097 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,105 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,241 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,249 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,257 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,264 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,271 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,279 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:31,286 copying humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/lib/humann/tests/data/tooltest-rna_dna_norm 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2021-04-22T23:40:48,056 12.65 MB 2021-04-22T23:40:48,056 12.66 MB 2021-04-22T23:40:48,056 12.66 MB 2021-04-22T23:40:48,056 12.67 MB 2021-04-22T23:40:48,056 12.68 MB 2021-04-22T23:40:48,056 12.69 MB 2021-04-22T23:40:48,056 12.70 MB 2021-04-22T23:40:48,056 12.70 MB 2021-04-22T23:40:48,056 12.71 MB 2021-04-22T23:40:48,056 12.72 MB 2021-04-22T23:40:48,056 12.73 MB 2021-04-22T23:40:48,056 12.73 MB 2021-04-22T23:40:48,056 12.74 MB 2021-04-22T23:40:55,754 running install_lib 2021-04-22T23:40:55,769 creating build/bdist.linux-armv7l 2021-04-22T23:40:55,770 creating build/bdist.linux-armv7l/wheel 2021-04-22T23:40:55,774 creating build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:55,778 creating build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,780 copying build/lib/humann/tests/functional_tests_tools.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,786 copying build/lib/humann/tests/advanced_tests_translated_search.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,793 copying build/lib/humann/tests/advanced_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,804 copying build/lib/humann/tests/functional_tests_humann.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,811 copying build/lib/humann/tests/basic_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,816 copying build/lib/humann/tests/functional_tests_biom_tools.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,821 copying build/lib/humann/tests/advanced_tests_store.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,828 copying build/lib/humann/tests/basic_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,834 copying build/lib/humann/tests/utils.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,840 copying build/lib/humann/tests/basic_tests_store.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,851 copying build/lib/humann/tests/humann_test.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,856 copying build/lib/humann/tests/advanced_tests_blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,862 copying build/lib/humann/tests/__init__.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,865 copying build/lib/humann/tests/basic_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,871 copying build/lib/humann/tests/advanced_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,880 copying build/lib/humann/tests/advanced_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,885 copying build/lib/humann/tests/functional_tests_biom_humann.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,891 copying build/lib/humann/tests/advanced_tests_quantify_families.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,898 copying build/lib/humann/tests/cfg.py -> build/bdist.linux-armv7l/wheel/humann/tests 2021-04-22T23:40:55,908 creating build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:55,909 copying build/lib/humann/tests/data/demo_genefamilies_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:55,937 copying build/lib/humann/tests/data/demo_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:55,971 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:55,975 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:55,981 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:55,991 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:55,997 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:56,001 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:56,009 copying build/lib/humann/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-renorm_table 2021-04-22T23:40:56,013 copying build/lib/humann/tests/data/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,038 copying build/lib/humann/tests/data/id_mapping_gene_table.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,042 copying build/lib/humann/tests/data/multi_sample_genefamilies_sample1.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,047 copying build/lib/humann/tests/data/file.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,051 copying build/lib/humann/tests/data/genefamilies_biom_match.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,056 copying build/lib/humann/tests/data/test_pathways.dat -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,064 copying build/lib/humann/tests/data/2_aligned_3_unaligned.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,072 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:56,074 copying build/lib/humann/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:56,080 copying build/lib/humann/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:56,084 copying build/lib/humann/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:56,088 copying build/lib/humann/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-strain_profiler 2021-04-22T23:40:56,092 copying build/lib/humann/tests/data/convert_file.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,096 copying build/lib/humann/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,106 copying build/lib/humann/tests/data/multi_sample_genefamilies_sample2.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,112 copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,117 copying build/lib/humann/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,125 copying build/lib/humann/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,130 copying build/lib/humann/tests/data/gene_families.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,134 copying build/lib/humann/tests/data/genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,143 copying build/lib/humann/tests/data/multi_sample_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,149 copying build/lib/humann/tests/data/demo.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,613 copying build/lib/humann/tests/data/rapsearch2_output_without_header.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,617 copying build/lib/humann/tests/data/usearch_with_uniref50_output.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,621 copying build/lib/humann/tests/data/usearch_output.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,628 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:56,630 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:56,637 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:56,663 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:56,669 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:56,677 copying build/lib/humann/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-merge_abundance_tables 2021-04-22T23:40:56,683 copying build/lib/humann/tests/data/file_single_line_sequences.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,689 copying build/lib/humann/tests/data/id_mapping.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,697 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,699 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,705 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,710 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,718 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,722 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,726 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,732 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,738 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,744 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,749 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,753 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,757 copying build/lib/humann/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-regroup_table 2021-04-22T23:40:56,761 copying build/lib/humann/tests/data/annotations.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,765 copying build/lib/humann/tests/data/demo_pathabundance_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:56,771 copying build/lib/humann/tests/data/demo.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,044 copying build/lib/humann/tests/data/test_pathways_results.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,050 copying build/lib/humann/tests/data/reactions.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,056 copying build/lib/humann/tests/data/file_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,061 copying build/lib/humann/tests/data/convert_file_at_character.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,067 copying build/lib/humann/tests/data/file.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,072 copying build/lib/humann/tests/data/file.bam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,077 copying build/lib/humann/tests/data/convert_file_pick_frames.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,081 copying build/lib/humann/tests/data/gene_families_uniref50_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,087 copying build/lib/humann/tests/data/multi_sample_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,096 copying build/lib/humann/tests/data/small_map_uniref50_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,101 copying build/lib/humann/tests/data/file_without_header_with_tags.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,107 copying build/lib/humann/tests/data/demo.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,122 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,124 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,129 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,134 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input.biom -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,145 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,151 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,157 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,162 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,168 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,174 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,179 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,185 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,191 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,196 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,202 copying build/lib/humann/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,208 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,213 copying build/lib/humann/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rename_table 2021-04-22T23:40:57,220 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:57,222 copying build/lib/humann/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:57,226 copying build/lib/humann/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:57,230 copying build/lib/humann/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-infer_taxonomy 2021-04-22T23:40:57,235 copying build/lib/humann/tests/data/file_no_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,240 copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,245 copying build/lib/humann/tests/data/rapsearch2_output_with_header.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,251 copying build/lib/humann/tests/data/demo.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,467 copying build/lib/humann/tests/data/demo_pathcoverage_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,471 copying build/lib/humann/tests/data/demo_metaphlan_bugs_list.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,476 copying build/lib/humann/tests/data/convert_file_multiline.fasta -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,480 copying build/lib/humann/tests/data/test_pathways_flat.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,485 copying build/lib/humann/tests/data/file_without_header.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,491 copying build/lib/humann/tests/data/file_with_header.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,497 copying build/lib/humann/tests/data/id_mapping_coverage_filter.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,504 creating build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,506 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,511 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,515 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,519 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,524 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,530 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,535 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,541 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,546 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,550 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,554 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,558 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,562 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,568 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,573 copying build/lib/humann/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann/tests/data/tooltest-rna_dna_norm 2021-04-22T23:40:57,579 copying build/lib/humann/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,584 copying build/lib/humann/tests/data/convert_file.fastq -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,588 copying build/lib/humann/tests/data/annotations.sam -> build/bdist.linux-armv7l/wheel/humann/tests/data 2021-04-22T23:40:57,593 copying build/lib/humann/store.py -> build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:57,603 creating build/bdist.linux-armv7l/wheel/humann/search 2021-04-22T23:40:57,606 copying build/lib/humann/search/translated.py -> build/bdist.linux-armv7l/wheel/humann/search 2021-04-22T23:40:57,618 copying build/lib/humann/search/nucleotide.py -> build/bdist.linux-armv7l/wheel/humann/search 2021-04-22T23:40:57,626 copying build/lib/humann/search/prescreen.py -> build/bdist.linux-armv7l/wheel/humann/search 2021-04-22T23:40:57,633 copying build/lib/humann/search/__init__.py -> build/bdist.linux-armv7l/wheel/humann/search 2021-04-22T23:40:57,637 copying build/lib/humann/search/pick_frames.py -> build/bdist.linux-armv7l/wheel/humann/search 2021-04-22T23:40:57,644 copying build/lib/humann/search/blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann/search 2021-04-22T23:40:57,649 copying build/lib/humann/config.py -> build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:57,656 copying build/lib/humann/check.py -> build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:57,660 copying build/lib/humann/utilities.py -> build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:57,672 creating build/bdist.linux-armv7l/wheel/humann/quantify 2021-04-22T23:40:57,676 copying build/lib/humann/quantify/families.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2021-04-22T23:40:57,684 copying build/lib/humann/quantify/modules.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2021-04-22T23:40:57,692 copying build/lib/humann/quantify/chi2cdf.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2021-04-22T23:40:57,698 copying build/lib/humann/quantify/xipe.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2021-04-22T23:40:57,704 copying build/lib/humann/quantify/__init__.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2021-04-22T23:40:57,710 copying build/lib/humann/quantify/MinPath12hmp.py -> build/bdist.linux-armv7l/wheel/humann/quantify 2021-04-22T23:40:57,720 copying build/lib/humann/__init__.py -> build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:57,726 copying build/lib/humann/humann.cfg -> build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:57,731 copying build/lib/humann/humann.py -> build/bdist.linux-armv7l/wheel/humann 2021-04-22T23:40:57,743 creating build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,746 copying build/lib/humann/tools/rna_dna_norm.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,754 copying build/lib/humann/tools/reduce_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,761 copying build/lib/humann/tools/split_stratified_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,769 copying build/lib/humann/tools/humann_databases.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,775 copying build/lib/humann/tools/humann_config.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,780 copying build/lib/humann/tools/humann_expand_results_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,786 copying build/lib/humann/tools/genefamilies_genus_level.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,792 copying build/lib/humann/tools/humann_humann1_kegg.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,801 copying build/lib/humann/tools/humann_barplot.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,810 copying build/lib/humann/tools/rename_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,817 copying build/lib/humann/tools/join_tables.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,823 copying build/lib/humann/tools/build_custom_database.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,829 copying build/lib/humann/tools/strain_profiler.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,837 copying build/lib/humann/tools/util.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,846 copying build/lib/humann/tools/renorm_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,853 copying build/lib/humann/tools/humann_benchmark.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,858 copying build/lib/humann/tools/infer_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,865 copying build/lib/humann/tools/humann_associate.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,872 copying build/lib/humann/tools/split_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,880 copying build/lib/humann/tools/__init__.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,886 copying build/lib/humann/tools/regroup_table.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,894 copying build/lib/humann/tools/merge_abundance.py -> build/bdist.linux-armv7l/wheel/humann/tools 2021-04-22T23:40:57,901 creating build/bdist.linux-armv7l/wheel/humann/data 2021-04-22T23:40:57,905 creating build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:57,908 copying build/lib/humann/data/misc/map_kegg-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:57,916 copying build/lib/humann/data/misc/map_metacyc-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:57,928 copying build/lib/humann/data/misc/map_pfam_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:57,953 copying build/lib/humann/data/misc/map_ko_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:57,977 copying build/lib/humann/data/misc/map_go_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:58,032 copying build/lib/humann/data/misc/map_kegg-mdl_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:58,054 copying build/lib/humann/data/misc/map_level4ec_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:58,067 copying build/lib/humann/data/misc/KeggOrgId2OrgNameTable.txt -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:58,085 copying build/lib/humann/data/misc/README.txt -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:58,092 copying build/lib/humann/data/misc/map_metacyc-rxn_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:58,114 copying build/lib/humann/data/misc/map_transporter_uniref50.txt.gz -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:40:58,120 copying build/lib/humann/data/misc/map_uniref50_name.txt.bz2 -> build/bdist.linux-armv7l/wheel/humann/data/misc 2021-04-22T23:41:01,194 creating build/bdist.linux-armv7l/wheel/humann/data/uniref_DEMO 2021-04-22T23:41:01,196 copying build/lib/humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.fna -> build/bdist.linux-armv7l/wheel/humann/data/uniref_DEMO 2021-04-22T23:41:01,203 copying build/lib/humann/data/uniref_DEMO/uniref90_demo_prots_v201901b.dmnd -> build/bdist.linux-armv7l/wheel/humann/data/uniref_DEMO 2021-04-22T23:41:01,213 creating build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:01,215 copying build/lib/humann/data/pathways/metacyc_structured_pathways_filtered -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:01,238 copying build/lib/humann/data/pathways/metacyc_pathways_to_organisms -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:01,266 copying build/lib/humann/data/pathways/unipathway_pathways -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:01,377 copying build/lib/humann/data/pathways/metacyc_pathways_structured_filtered -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:01,399 copying build/lib/humann/data/pathways/unipathway_uniprots.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:01,502 copying build/lib/humann/data/pathways/metacyc_pathways -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:01,531 copying build/lib/humann/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:06,874 copying build/lib/humann/data/pathways/metacyc_pathways_structured -> build/bdist.linux-armv7l/wheel/humann/data/pathways 2021-04-22T23:41:06,909 creating build/bdist.linux-armv7l/wheel/humann/data/chocophlan_DEMO 2021-04-22T23:41:06,912 copying build/lib/humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v296_201901b.ffn.gz -> build/bdist.linux-armv7l/wheel/humann/data/chocophlan_DEMO 2021-04-22T23:41:07,330 copying build/lib/humann/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v296_201901b.ffn.gz -> build/bdist.linux-armv7l/wheel/humann/data/chocophlan_DEMO 2021-04-22T23:41:07,652 running install_egg_info 2021-04-22T23:41:07,691 running egg_info 2021-04-22T23:41:07,695 writing humann.egg-info/PKG-INFO 2021-04-22T23:41:07,702 writing entry points to humann.egg-info/entry_points.txt 2021-04-22T23:41:07,705 writing dependency_links to humann.egg-info/dependency_links.txt 2021-04-22T23:41:07,709 writing top-level names to humann.egg-info/top_level.txt 2021-04-22T23:41:07,832 reading manifest file 'humann.egg-info/SOURCES.txt' 2021-04-22T23:41:07,858 reading manifest template 'MANIFEST.in' 2021-04-22T23:41:07,862 warning: no files found matching 'humann/tools/README.txt' 2021-04-22T23:41:07,863 warning: no files found matching 'humann/maintenance/README.md' 2021-04-22T23:41:07,864 warning: no files found matching 'humann/maintenance/metacyc_swissprot_trembl_reference_databases.md' 2021-04-22T23:41:07,868 no previously-included directories found matching 'humann/quantify/MinPath' 2021-04-22T23:41:07,872 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_name.txt.gz' 2021-04-22T23:41:07,877 warning: no previously-included files found matching 'humann/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' 2021-04-22T23:41:07,881 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref50.txt.gz' 2021-04-22T23:41:07,886 warning: no previously-included files found matching 'humann/data/misc/map_infogo1000_uniref90.txt.gz' 2021-04-22T23:41:07,890 warning: no previously-included files found matching 'humann/data/misc/map_uniref90_name.txt.bz2' 2021-04-22T23:41:07,894 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref50.txt.gz' 2021-04-22T23:41:07,898 warning: no previously-included files found matching 'humann/data/misc/map_go_uniref90.txt.gz' 2021-04-22T23:41:07,902 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref50.txt.gz' 2021-04-22T23:41:07,906 warning: no previously-included files found matching 'humann/data/misc/map_ko_uniref90.txt.gz' 2021-04-22T23:41:07,911 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref50.txt.gz' 2021-04-22T23:41:07,915 warning: no previously-included files found matching 'humann/data/misc/map_level4ec_uniref90.txt.gz' 2021-04-22T23:41:07,919 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref50.txt.gz' 2021-04-22T23:41:07,923 warning: no previously-included files found matching 'humann/data/misc/map_pfam_uniref90.txt.gz' 2021-04-22T23:41:07,927 warning: no previously-included files found matching 'humann/data/misc/uniref50-tol-lca.dat.gz' 2021-04-22T23:41:07,931 warning: no previously-included files found matching 'humann/data/misc/uniref90-tol-lca.dat.gz' 2021-04-22T23:41:07,935 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref50.txt.gz' 2021-04-22T23:41:07,939 warning: no previously-included files found matching 'humann/data/misc/map_eggnog_uniref90.txt.gz' 2021-04-22T23:41:07,974 writing manifest file 'humann.egg-info/SOURCES.txt' 2021-04-22T23:41:07,980 Copying humann.egg-info to build/bdist.linux-armv7l/wheel/humann-3.0.0-py3.5.egg-info 2021-04-22T23:41:08,014 running install_scripts 2021-04-22T23:41:08,089 Installing latest glpk. 2021-04-22T23:41:08,090 Downloading http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz 2021-04-22T23:41:08,323 Downloading file of size: 3.27 MB 2021-04-22T23:41:09,309 0.01 MB 0.24 % 12.81 MB/sec 0 min 0 sec 2021-04-22T23:41:09,309 0.02 MB 0.48 % 0.23 MB/sec 0 min 14 sec 2021-04-22T23:41:09,309 0.02 MB 0.72 % 0.34 MB/sec 0 min 9 sec 2021-04-22T23:41:09,309 0.03 MB 0.96 % 0.45 MB/sec 0 min 7 sec 2021-04-22T23:41:09,309 0.04 MB 1.20 % 0.56 MB/sec 0 min 6 sec 2021-04-22T23:41:09,309 0.05 MB 1.44 % 0.33 MB/sec 0 min 10 sec 2021-04-22T23:41:09,309 0.05 MB 1.67 % 0.39 MB/sec 0 min 8 sec 2021-04-22T23:41:09,309 0.06 MB 1.91 % 0.44 MB/sec 0 min 7 sec 2021-04-22T23:41:09,309 0.07 MB 2.15 % 0.49 MB/sec 0 min 6 sec 2021-04-22T23:41:09,309 0.08 MB 2.39 % 0.54 MB/sec 0 min 6 sec 2021-04-22T23:41:09,309 0.09 MB 2.63 % 0.60 MB/sec 0 min 5 sec 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for suffix of object files... o 2021-04-22T23:41:16,427 checking whether we are using the GNU C compiler... yes 2021-04-22T23:41:16,587 checking whether gcc accepts -g... yes 2021-04-22T23:41:16,824 checking for gcc option to accept ISO C89... none needed 2021-04-22T23:41:16,878 checking for style of include used by make... GNU 2021-04-22T23:41:17,307 checking dependency style of gcc... gcc3 2021-04-22T23:41:17,797 checking build system type... armv7l-unknown-linux-gnueabihf 2021-04-22T23:41:17,800 checking host system type... armv7l-unknown-linux-gnueabihf 2021-04-22T23:41:17,972 checking how to print strings... printf 2021-04-22T23:41:18,012 checking for a sed that does not truncate output... /bin/sed 2021-04-22T23:41:18,048 checking for grep that handles long lines and -e... /bin/grep 2021-04-22T23:41:18,066 checking for egrep... /bin/grep -E 2021-04-22T23:41:18,078 checking for fgrep... /bin/grep -F 2021-04-22T23:41:18,116 checking for ld used by gcc... /usr/bin/ld 2021-04-22T23:41:18,134 checking if the linker (/usr/bin/ld) is GNU ld... yes 2021-04-22T23:41:18,241 checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B 2021-04-22T23:41:18,430 checking the name lister (/usr/bin/nm -B) interface... BSD nm 2021-04-22T23:41:18,433 checking whether ln -s works... yes 2021-04-22T23:41:18,685 checking the maximum length of command line arguments... 1572864 2021-04-22T23:41:18,694 checking whether the shell understands some XSI constructs... yes 2021-04-22T23:41:18,702 checking whether the shell understands "+="... yes 2021-04-22T23:41:18,727 checking how to convert armv7l-unknown-linux-gnueabihf file names to armv7l-unknown-linux-gnueabihf format... func_convert_file_noop 2021-04-22T23:41:18,731 checking how to convert armv7l-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop 2021-04-22T23:41:18,734 checking for /usr/bin/ld option to reload object files... -r 2021-04-22T23:41:18,743 checking for objdump... objdump 2021-04-22T23:41:18,750 checking how to recognize dependent libraries... pass_all 2021-04-22T23:41:18,759 checking for dlltool... no 2021-04-22T23:41:18,762 checking how to associate runtime and link libraries... printf %s\n 2021-04-22T23:41:18,770 checking for ar... ar 2021-04-22T23:41:19,002 checking for archiver @FILE support... @ 2021-04-22T23:41:19,012 checking for strip... strip 2021-04-22T23:41:19,021 checking for ranlib... ranlib 2021-04-22T23:41:19,637 checking command to parse /usr/bin/nm -B output from gcc object... ok 2021-04-22T23:41:19,654 checking for sysroot... no 2021-04-22T23:41:19,671 checking for mt... mt 2021-04-22T23:41:19,736 checking if mt is a manifest tool... no 2021-04-22T23:41:19,958 checking how to run the C preprocessor... gcc -E 2021-04-22T23:41:20,992 checking for ANSI C header files... yes 2021-04-22T23:41:21,228 checking for sys/types.h... yes 2021-04-22T23:41:21,519 checking for sys/stat.h... yes 2021-04-22T23:41:21,801 checking for stdlib.h... yes 2021-04-22T23:41:22,114 checking for string.h... yes 2021-04-22T23:41:22,432 checking for memory.h... yes 2021-04-22T23:41:22,786 checking for strings.h... yes 2021-04-22T23:41:23,099 checking for inttypes.h... yes 2021-04-22T23:41:23,394 checking for stdint.h... yes 2021-04-22T23:41:23,719 checking for unistd.h... yes 2021-04-22T23:41:24,034 checking for dlfcn.h... yes 2021-04-22T23:41:24,078 checking for objdir... .libs 2021-04-22T23:41:24,833 checking if gcc supports -fno-rtti -fno-exceptions... no 2021-04-22T23:41:24,837 checking for gcc option to produce PIC... -fPIC -DPIC 2021-04-22T23:41:25,012 checking if gcc PIC flag -fPIC -DPIC works... yes 2021-04-22T23:41:25,910 checking if gcc static flag -static works... yes 2021-04-22T23:41:26,154 checking if gcc supports -c -o file.o... yes 2021-04-22T23:41:26,156 checking if gcc supports -c -o file.o... (cached) yes 2021-04-22T23:41:26,230 checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes 2021-04-22T23:41:26,523 checking whether -lc should be explicitly linked in... no 2021-04-22T23:41:27,177 checking dynamic linker characteristics... GNU/Linux ld.so 2021-04-22T23:41:27,180 checking how to hardcode library paths into programs... immediate 2021-04-22T23:41:27,195 checking whether stripping libraries is possible... yes 2021-04-22T23:41:27,197 checking if libtool supports shared libraries... yes 2021-04-22T23:41:27,199 checking whether to build shared libraries... yes 2021-04-22T23:41:27,201 checking whether to build static libraries... yes 2021-04-22T23:41:27,590 checking for exp in -lm... yes 2021-04-22T23:41:27,871 checking sys/time.h usability... yes 2021-04-22T23:41:27,954 checking sys/time.h presence... yes 2021-04-22T23:41:27,956 checking for sys/time.h... yes 2021-04-22T23:41:28,333 checking for gettimeofday... yes 2021-04-22T23:41:28,339 checking whether to use GNU MP bignum library... no 2021-04-22T23:41:28,344 checking whether to enable shared library support... no 2021-04-22T23:41:28,349 checking whether to enable MathProg ODBC support... no 2021-04-22T23:41:28,353 checking whether to enable MathProg MySQL support... no 2021-04-22T23:41:28,512 checking that generated files are newer than configure... done 2021-04-22T23:41:28,515 configure: creating ./config.status 2021-04-22T23:41:31,801 config.status: creating src/Makefile 2021-04-22T23:41:31,983 config.status: creating examples/Makefile 2021-04-22T23:41:32,100 config.status: creating Makefile 2021-04-22T23:41:32,197 config.status: creating config.h 2021-04-22T23:41:32,286 config.status: executing depfiles commands 2021-04-22T23:41:35,834 config.status: executing libtool commands 2021-04-22T23:41:37,368 make all-recursive 2021-04-22T23:41:37,394 make[1]: Entering directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55' 2021-04-22T23:41:37,412 Making all in src 2021-04-22T23:41:37,639 make[2]: Entering directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/src' 2021-04-22T23:41:37,640 /bin/bash ../libtool --tag=CC --mode=compile gcc 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-DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_preprocess.lo -MD -MP -MF .deps/libglpk_la-amd_preprocess.Tpo -c amd/amd_preprocess.c -fPIC -DPIC -o .libs/libglpk_la-amd_preprocess.o 2021-04-22T23:46:12,665 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_preprocess.lo -MD -MP -MF .deps/libglpk_la-amd_preprocess.Tpo -c amd/amd_preprocess.c -o libglpk_la-amd_preprocess.o >/dev/null 2>&1 2021-04-22T23:46:13,116 mv -f .deps/libglpk_la-amd_preprocess.Tpo .deps/libglpk_la-amd_preprocess.Plo 2021-04-22T23:46:13,140 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c -o libglpk_la-amd_valid.lo 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2021-04-22T23:46:44,007 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-cfg.lo -MD -MP -MF .deps/libglpk_la-cfg.Tpo -c cglib/cfg.c -fPIC -DPIC -o .libs/libglpk_la-cfg.o 2021-04-22T23:46:45,137 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-cfg.lo -MD -MP -MF .deps/libglpk_la-cfg.Tpo -c cglib/cfg.c -o libglpk_la-cfg.o >/dev/null 2>&1 2021-04-22T23:46:46,139 mv -f .deps/libglpk_la-cfg.Tpo .deps/libglpk_la-cfg.Plo 2021-04-22T23:46:46,161 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-cfg1.lo -MD -MP -MF .deps/libglpk_la-cfg1.Tpo -c -o libglpk_la-cfg1.lo `test -f 'cglib/cfg1.c' || echo './'`cglib/cfg1.c 2021-04-22T23:46:46,287 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2021-04-22T23:47:09,952 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-bignum.lo -MD -MP -MF .deps/libglpk_la-bignum.Tpo -c misc/bignum.c -fPIC -DPIC -o .libs/libglpk_la-bignum.o 2021-04-22T23:47:10,612 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-bignum.lo -MD -MP -MF .deps/libglpk_la-bignum.Tpo -c misc/bignum.c -o libglpk_la-bignum.o >/dev/null 2>&1 2021-04-22T23:47:11,264 mv -f .deps/libglpk_la-bignum.Tpo .deps/libglpk_la-bignum.Plo 2021-04-22T23:47:11,284 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-dmp.lo -MD -MP -MF .deps/libglpk_la-dmp.Tpo -c -o libglpk_la-dmp.lo `test -f 'misc/dmp.c' || echo './'`misc/dmp.c 2021-04-22T23:47:11,399 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-dmp.lo -MD -MP -MF .deps/libglpk_la-dmp.Tpo -c misc/dmp.c -fPIC -DPIC -o .libs/libglpk_la-dmp.o 2021-04-22T23:47:11,857 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-dmp.lo -MD -MP -MF .deps/libglpk_la-dmp.Tpo -c misc/dmp.c -o libglpk_la-dmp.o >/dev/null 2>&1 2021-04-22T23:47:12,322 mv -f .deps/libglpk_la-dmp.Tpo .deps/libglpk_la-dmp.Plo 2021-04-22T23:47:12,340 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ffalg.lo -MD -MP -MF .deps/libglpk_la-ffalg.Tpo -c -o libglpk_la-ffalg.lo `test -f 'misc/ffalg.c' || echo './'`misc/ffalg.c 2021-04-22T23:47:12,456 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2021-04-22T23:48:26,521 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c -o libglpk_la-zutil.lo `test -f 'zlib/zutil.c' || echo './'`zlib/zutil.c 2021-04-22T23:48:26,646 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -fPIC -DPIC -o .libs/libglpk_la-zutil.o 2021-04-22T23:48:26,896 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -o libglpk_la-zutil.o >/dev/null 2>&1 2021-04-22T23:48:27,160 mv -f .deps/libglpk_la-zutil.Tpo .deps/libglpk_la-zutil.Plo 2021-04-22T23:48:27,182 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -version-info 37:2:1 -export-symbols-regex '^glp_*' -o libglpk.la -rpath /usr/lib libglpk_la-avl.lo libglpk_la-bfd.lo libglpk_la-bfx.lo libglpk_la-glpapi01.lo libglpk_la-glpapi02.lo libglpk_la-glpapi03.lo libglpk_la-glpapi04.lo libglpk_la-glpapi05.lo libglpk_la-glpapi06.lo libglpk_la-glpapi07.lo libglpk_la-glpapi08.lo libglpk_la-glpapi09.lo libglpk_la-glpapi10.lo libglpk_la-glpapi11.lo libglpk_la-glpapi12.lo libglpk_la-glpapi13.lo libglpk_la-glpapi14.lo libglpk_la-glpapi15.lo libglpk_la-glpapi16.lo libglpk_la-glpapi17.lo libglpk_la-glpapi18.lo libglpk_la-glpapi19.lo libglpk_la-glpapi20.lo libglpk_la-glpapi21.lo libglpk_la-glpcpx.lo libglpk_la-glpdmx.lo libglpk_la-glpgmp.lo libglpk_la-glphbm.lo libglpk_la-glpini01.lo libglpk_la-glpini02.lo libglpk_la-glpios01.lo libglpk_la-glpios02.lo libglpk_la-glpios03.lo libglpk_la-glpios04.lo libglpk_la-glpios05.lo libglpk_la-glpios06.lo libglpk_la-glpios07.lo libglpk_la-glpios08.lo libglpk_la-glpios09.lo libglpk_la-glpios10.lo libglpk_la-glpios11.lo libglpk_la-glpios12.lo libglpk_la-glpipm.lo libglpk_la-glpmat.lo libglpk_la-glpmpl01.lo libglpk_la-glpmpl02.lo libglpk_la-glpmpl03.lo libglpk_la-glpmpl04.lo libglpk_la-glpmpl05.lo libglpk_la-glpmpl06.lo libglpk_la-glpmps.lo libglpk_la-glpnet03.lo libglpk_la-glpnet04.lo libglpk_la-glpnet05.lo libglpk_la-glpnpp01.lo libglpk_la-glpnpp02.lo libglpk_la-glpnpp03.lo libglpk_la-glpnpp04.lo libglpk_la-glpnpp05.lo libglpk_la-glpnpp06.lo libglpk_la-glprgr.lo libglpk_la-glpscl.lo libglpk_la-glpsdf.lo libglpk_la-glpspm.lo libglpk_la-glpspx01.lo libglpk_la-glpspx02.lo libglpk_la-glpsql.lo libglpk_la-glpssx01.lo libglpk_la-glpssx02.lo libglpk_la-glptsp.lo libglpk_la-lux.lo libglpk_la-amd_1.lo libglpk_la-amd_2.lo libglpk_la-amd_aat.lo libglpk_la-amd_control.lo libglpk_la-amd_defaults.lo libglpk_la-amd_dump.lo libglpk_la-amd_info.lo libglpk_la-amd_order.lo libglpk_la-amd_post_tree.lo libglpk_la-amd_postorder.lo libglpk_la-amd_preprocess.lo libglpk_la-amd_valid.lo libglpk_la-btf.lo libglpk_la-btfint.lo libglpk_la-fhv.lo libglpk_la-fhvint.lo libglpk_la-ifu.lo libglpk_la-luf.lo libglpk_la-lufint.lo libglpk_la-scf.lo libglpk_la-scfint.lo libglpk_la-sgf.lo libglpk_la-sva.lo libglpk_la-cfg.lo libglpk_la-cfg1.lo libglpk_la-colamd.lo libglpk_la-alloc.lo libglpk_la-dlsup.lo libglpk_la-env.lo libglpk_la-error.lo libglpk_la-stdout.lo libglpk_la-stream.lo libglpk_la-time.lo libglpk_la-tls.lo libglpk_la-minisat.lo libglpk_la-bignum.lo libglpk_la-dmp.lo libglpk_la-ffalg.lo libglpk_la-fp2rat.lo libglpk_la-gcd.lo libglpk_la-jd.lo libglpk_la-keller.lo libglpk_la-mc13d.lo libglpk_la-mc21a.lo libglpk_la-okalg.lo libglpk_la-qmd.lo libglpk_la-relax4.lo libglpk_la-rng.lo libglpk_la-rng1.lo libglpk_la-round2n.lo libglpk_la-str2int.lo libglpk_la-str2num.lo libglpk_la-strspx.lo libglpk_la-strtrim.lo libglpk_la-triang.lo libglpk_la-wclique.lo libglpk_la-wclique1.lo libglpk_la-proxy.lo libglpk_la-proxy1.lo libglpk_la-adler32.lo libglpk_la-compress.lo libglpk_la-crc32.lo libglpk_la-deflate.lo libglpk_la-gzclose.lo libglpk_la-gzlib.lo libglpk_la-gzread.lo libglpk_la-gzwrite.lo libglpk_la-inffast.lo libglpk_la-inflate.lo libglpk_la-inftrees.lo libglpk_la-trees.lo libglpk_la-uncompr.lo libglpk_la-zio.lo libglpk_la-zutil.lo -lm 2021-04-22T23:48:28,342 libtool: link: /usr/bin/nm -B .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o | sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' | /bin/sed 's/.* //' | sort | uniq > .libs/libglpk.exp 2021-04-22T23:48:28,609 libtool: link: /bin/grep -E -e "^glp_*" ".libs/libglpk.exp" > ".libs/libglpk.expT" 2021-04-22T23:48:28,644 libtool: link: mv -f ".libs/libglpk.expT" ".libs/libglpk.exp" 2021-04-22T23:48:28,682 libtool: link: echo "{ global:" > .libs/libglpk.ver 2021-04-22T23:48:28,698 libtool: link: cat .libs/libglpk.exp | sed -e "s/\(.*\)/\1;/" >> .libs/libglpk.ver 2021-04-22T23:48:28,738 libtool: link: echo "local: *; };" >> .libs/libglpk.ver 2021-04-22T23:48:28,748 libtool: link: gcc -shared -fPIC -DPIC .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o -lm -O2 -Wl,-soname -Wl,libglpk.so.36 -Wl,-version-script -Wl,.libs/libglpk.ver -o .libs/libglpk.so.36.1.2 2021-04-22T23:48:30,144 libtool: link: (cd ".libs" && rm -f "libglpk.so.36" && ln -s "libglpk.so.36.1.2" "libglpk.so.36") 2021-04-22T23:48:30,177 libtool: link: (cd ".libs" && rm -f "libglpk.so" && ln -s "libglpk.so.36.1.2" "libglpk.so") 2021-04-22T23:48:30,232 libtool: link: ar cru .libs/libglpk.a libglpk_la-avl.o libglpk_la-bfd.o libglpk_la-bfx.o libglpk_la-glpapi01.o libglpk_la-glpapi02.o libglpk_la-glpapi03.o libglpk_la-glpapi04.o libglpk_la-glpapi05.o libglpk_la-glpapi06.o libglpk_la-glpapi07.o libglpk_la-glpapi08.o libglpk_la-glpapi09.o libglpk_la-glpapi10.o libglpk_la-glpapi11.o libglpk_la-glpapi12.o libglpk_la-glpapi13.o libglpk_la-glpapi14.o libglpk_la-glpapi15.o libglpk_la-glpapi16.o libglpk_la-glpapi17.o libglpk_la-glpapi18.o libglpk_la-glpapi19.o libglpk_la-glpapi20.o libglpk_la-glpapi21.o libglpk_la-glpcpx.o libglpk_la-glpdmx.o libglpk_la-glpgmp.o libglpk_la-glphbm.o libglpk_la-glpini01.o libglpk_la-glpini02.o libglpk_la-glpios01.o libglpk_la-glpios02.o libglpk_la-glpios03.o libglpk_la-glpios04.o libglpk_la-glpios05.o libglpk_la-glpios06.o libglpk_la-glpios07.o libglpk_la-glpios08.o libglpk_la-glpios09.o libglpk_la-glpios10.o libglpk_la-glpios11.o libglpk_la-glpios12.o libglpk_la-glpipm.o libglpk_la-glpmat.o libglpk_la-glpmpl01.o libglpk_la-glpmpl02.o libglpk_la-glpmpl03.o libglpk_la-glpmpl04.o libglpk_la-glpmpl05.o libglpk_la-glpmpl06.o libglpk_la-glpmps.o libglpk_la-glpnet03.o libglpk_la-glpnet04.o libglpk_la-glpnet05.o libglpk_la-glpnpp01.o libglpk_la-glpnpp02.o libglpk_la-glpnpp03.o libglpk_la-glpnpp04.o libglpk_la-glpnpp05.o libglpk_la-glpnpp06.o libglpk_la-glprgr.o libglpk_la-glpscl.o libglpk_la-glpsdf.o libglpk_la-glpspm.o libglpk_la-glpspx01.o libglpk_la-glpspx02.o libglpk_la-glpsql.o libglpk_la-glpssx01.o libglpk_la-glpssx02.o libglpk_la-glptsp.o libglpk_la-lux.o libglpk_la-amd_1.o libglpk_la-amd_2.o libglpk_la-amd_aat.o libglpk_la-amd_control.o libglpk_la-amd_defaults.o libglpk_la-amd_dump.o libglpk_la-amd_info.o libglpk_la-amd_order.o libglpk_la-amd_post_tree.o libglpk_la-amd_postorder.o libglpk_la-amd_preprocess.o libglpk_la-amd_valid.o libglpk_la-btf.o libglpk_la-btfint.o libglpk_la-fhv.o libglpk_la-fhvint.o libglpk_la-ifu.o libglpk_la-luf.o libglpk_la-lufint.o libglpk_la-scf.o libglpk_la-scfint.o libglpk_la-sgf.o libglpk_la-sva.o libglpk_la-cfg.o libglpk_la-cfg1.o libglpk_la-colamd.o libglpk_la-alloc.o libglpk_la-dlsup.o libglpk_la-env.o libglpk_la-error.o libglpk_la-stdout.o libglpk_la-stream.o libglpk_la-time.o libglpk_la-tls.o libglpk_la-minisat.o libglpk_la-bignum.o libglpk_la-dmp.o libglpk_la-ffalg.o libglpk_la-fp2rat.o libglpk_la-gcd.o libglpk_la-jd.o libglpk_la-keller.o libglpk_la-mc13d.o libglpk_la-mc21a.o libglpk_la-okalg.o libglpk_la-qmd.o libglpk_la-relax4.o libglpk_la-rng.o libglpk_la-rng1.o libglpk_la-round2n.o libglpk_la-str2int.o libglpk_la-str2num.o libglpk_la-strspx.o libglpk_la-strtrim.o libglpk_la-triang.o libglpk_la-wclique.o libglpk_la-wclique1.o libglpk_la-proxy.o libglpk_la-proxy1.o libglpk_la-adler32.o libglpk_la-compress.o libglpk_la-crc32.o libglpk_la-deflate.o libglpk_la-gzclose.o libglpk_la-gzlib.o libglpk_la-gzread.o libglpk_la-gzwrite.o libglpk_la-inffast.o libglpk_la-inflate.o libglpk_la-inftrees.o libglpk_la-trees.o libglpk_la-uncompr.o libglpk_la-zio.o libglpk_la-zutil.o 2021-04-22T23:48:30,245 ar: `u' modifier ignored since `D' is the default (see `U') 2021-04-22T23:48:31,214 libtool: link: ranlib .libs/libglpk.a 2021-04-22T23:48:32,210 libtool: link: ( cd ".libs" && rm -f "libglpk.la" && ln -s "../libglpk.la" "libglpk.la" ) 2021-04-22T23:48:32,239 make[2]: Leaving directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/src' 2021-04-22T23:48:32,240 Making all in examples 2021-04-22T23:48:32,276 make[2]: Entering directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/examples' 2021-04-22T23:48:32,277 gcc -DHAVE_CONFIG_H -I. -I.. -I./../src -g -O2 -MT glpsol.o -MD -MP -MF .deps/glpsol.Tpo -c -o glpsol.o glpsol.c 2021-04-22T23:48:32,417 mv -f .deps/glpsol.Tpo .deps/glpsol.Po 2021-04-22T23:48:32,473 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -o glpsol glpsol.o ../src/libglpk.la -lm 2021-04-22T23:48:32,908 libtool: link: gcc -g -O2 -o .libs/glpsol glpsol.o ../src/.libs/libglpk.so -lm 2021-04-22T23:48:33,147 make[2]: Leaving directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/examples' 2021-04-22T23:48:33,168 make[2]: Entering directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55' 2021-04-22T23:48:33,184 make[2]: Leaving directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55' 2021-04-22T23:48:33,186 make[1]: Leaving directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55' 2021-04-22T23:48:33,227 Making install in src 2021-04-22T23:48:33,951 make[1]: Entering directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/src' 2021-04-22T23:48:34,315 make[2]: Entering directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/src' 2021-04-22T23:48:34,324 /bin/mkdir -p '/usr/lib' 2021-04-22T23:48:34,335 /bin/bash ../libtool --mode=install /usr/bin/install -c libglpk.la '/usr/lib' 2021-04-22T23:48:34,439 libtool: install: /usr/bin/install -c .libs/libglpk.so.36.1.2 /usr/lib/libglpk.so.36.1.2 2021-04-22T23:48:34,450 /usr/bin/install: cannot create regular file '/usr/lib/libglpk.so.36.1.2': Permission denied 2021-04-22T23:48:34,455 Makefile:502: recipe for target 'install-libLTLIBRARIES' failed 2021-04-22T23:48:34,456 make[2]: *** [install-libLTLIBRARIES] Error 1 2021-04-22T23:48:34,457 make[2]: Leaving directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/src' 2021-04-22T23:48:34,457 Makefile:1862: recipe for target 'install-am' failed 2021-04-22T23:48:34,458 make[1]: *** [install-am] Error 2 2021-04-22T23:48:34,458 make[1]: Leaving directory '/tmp/pip-wheel-aabv33bj/humann_5b2ce89191e34daf905602017460266b/glpk_download_uz1fczrw/glpk-4.55/src' 2021-04-22T23:48:34,460 Makefile:320: recipe for target 'install-recursive' failed 2021-04-22T23:48:34,461 make: *** [install-recursive] Error 1 2021-04-22T23:48:35,256 Installing diamond. 2021-04-22T23:48:35,260 Downloading http://github.com/bbuchfink/diamond/releases/download/v0.9.36/diamond-linux64.tar.gz 2021-04-22T23:48:35,757 Downloading file of size: 1.56 MB 2021-04-22T23:48:36,055 0.01 MB 0.50 % 1.68 MB/sec 0 min 1 sec 2021-04-22T23:48:36,055 0.02 MB 1.00 % 2.32 MB/sec 0 min 1 sec 2021-04-22T23:48:36,055 0.02 MB 1.50 % 2.69 MB/sec 0 min 1 sec 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Please install diamond. 2021-04-22T23:48:36,608 Installing bowtie2. 2021-04-22T23:48:36,610 Downloading http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip 2021-04-22T23:48:39,857 Downloading file of size: 25.18 MB 2021-04-22T23:48:56,903 0.01 MB 0.03 % 2.50 MB/sec 0 min 10 sec 2021-04-22T23:48:56,903 0.02 MB 0.06 % 2.83 MB/sec 0 min 9 sec 2021-04-22T23:48:56,903 0.02 MB 0.09 % 3.90 MB/sec 0 min 6 sec 2021-04-22T23:48:56,903 0.03 MB 0.12 % 0.86 MB/sec 0 min 29 sec 2021-04-22T23:48:56,903 0.04 MB 0.16 % 1.07 MB/sec 0 min 24 sec 2021-04-22T23:48:56,903 0.05 MB 0.19 % 1.23 MB/sec 0 min 20 sec 2021-04-22T23:48:56,903 0.05 MB 0.22 % 1.41 MB/sec 0 min 18 sec 2021-04-22T23:48:56,903 0.06 MB 0.25 % 1.52 MB/sec 0 min 17 sec 2021-04-22T23:48:56,903 0.07 MB 0.28 % 1.69 MB/sec 0 min 15 sec 2021-04-22T23:48:56,903 0.08 MB 0.31 % 1.78 MB/sec 0 min 14 sec 2021-04-22T23:48:56,903 0.09 MB 0.34 % 1.94 MB/sec 0 min 13 sec 2021-04-22T23:48:56,903 0.09 MB 0.37 % 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Please install bowtie2. 2021-04-22T23:49:07,195 creating build/bdist.linux-armv7l/wheel/humann-3.0.0.dist-info/WHEEL 2021-04-22T23:49:42,438 Building wheel for humann (setup.py): finished with status 'done' 2021-04-22T23:49:44,142 Created wheel for humann: filename=humann-3.0.0-py3-none-any.whl size=104256182 sha256=3772cfdcae8a82be794eebf43e2f1a961d808403de544ac283efefd618ff9c1f 2021-04-22T23:49:44,143 Stored in directory: /tmp/pip-ephem-wheel-cache-_1_d9ofi/wheels/ad/4a/ef/2e5c1f3a147eb953c5a5d6d23360a5f699d6192e2c8090d475 2021-04-22T23:49:44,229 Successfully built humann 2021-04-22T23:50:02,145 Removed build tracker: '/tmp/pip-req-tracker-8h8wy2lj'