2021-05-08T04:46:44,497 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-05-08T04:46:45,226 Created temporary directory: /tmp/pip-ephem-wheel-cache-8b8vysse
2021-05-08T04:46:45,231 Created temporary directory: /tmp/pip-req-tracker-63h0bdeb
2021-05-08T04:46:45,232 Initialized build tracking at /tmp/pip-req-tracker-63h0bdeb
2021-05-08T04:46:45,232 Created build tracker: /tmp/pip-req-tracker-63h0bdeb
2021-05-08T04:46:45,233 Entered build tracker: /tmp/pip-req-tracker-63h0bdeb
2021-05-08T04:46:45,234 Created temporary directory: /tmp/pip-wheel-5u7yhb6w
2021-05-08T04:46:45,300 1 location(s) to search for versions of ebi-eva-common-pyutils:
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2021-05-08T04:46:45,301 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-05-08T04:46:45,303 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-05-08T04:46:45,307 Found index url https://pypi.org/simple
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2021-05-08T04:46:45,779 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-05-08T04:46:45,815 Collecting ebi-eva-common-pyutils==0.3.12
2021-05-08T04:46:45,819   Created temporary directory: /tmp/pip-unpack-i2z9e22k
2021-05-08T04:46:45,900   Downloading ebi_eva_common_pyutils-0.3.12.tar.gz (19 kB)
2021-05-08T04:46:46,142   Added ebi-eva-common-pyutils==0.3.12 from https://files.pythonhosted.org/packages/bf/99/8247536c58b0ac882a9f8f1f67729339d4fdf10049a2947fb807ea6301e5/ebi_eva_common_pyutils-0.3.12.tar.gz#sha256=7b46982ce00172cc3a8df0e8f1e4e49b60413712a76d7d04c192a150b855a803 to build tracker '/tmp/pip-req-tracker-63h0bdeb'
2021-05-08T04:46:46,145     Running setup.py (path:/tmp/pip-wheel-5u7yhb6w/ebi-eva-common-pyutils_0e3efc5d0d9f4b04840a8eb7f2ac280a/setup.py) egg_info for package ebi-eva-common-pyutils
2021-05-08T04:46:46,147     Created temporary directory: /tmp/pip-pip-egg-info-6uyns6op
2021-05-08T04:46:46,148     Running command python setup.py egg_info
2021-05-08T04:46:48,626     running egg_info
2021-05-08T04:46:48,633     creating /tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info
2021-05-08T04:46:48,635     writing /tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-05-08T04:46:48,641     writing top-level names to /tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-05-08T04:46:48,644     writing dependency_links to /tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-05-08T04:46:48,647     writing requirements to /tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info/requires.txt
2021-05-08T04:46:48,651     writing manifest file '/tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-08T04:46:49,151     reading manifest file '/tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-08T04:46:49,161     writing manifest file '/tmp/pip-pip-egg-info-6uyns6op/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-08T04:46:49,295   Source in /tmp/pip-wheel-5u7yhb6w/ebi-eva-common-pyutils_0e3efc5d0d9f4b04840a8eb7f2ac280a has version 0.3.12, which satisfies requirement ebi-eva-common-pyutils==0.3.12 from https://files.pythonhosted.org/packages/bf/99/8247536c58b0ac882a9f8f1f67729339d4fdf10049a2947fb807ea6301e5/ebi_eva_common_pyutils-0.3.12.tar.gz#sha256=7b46982ce00172cc3a8df0e8f1e4e49b60413712a76d7d04c192a150b855a803
2021-05-08T04:46:49,296   Removed ebi-eva-common-pyutils==0.3.12 from https://files.pythonhosted.org/packages/bf/99/8247536c58b0ac882a9f8f1f67729339d4fdf10049a2947fb807ea6301e5/ebi_eva_common_pyutils-0.3.12.tar.gz#sha256=7b46982ce00172cc3a8df0e8f1e4e49b60413712a76d7d04c192a150b855a803 from build tracker '/tmp/pip-req-tracker-63h0bdeb'
2021-05-08T04:46:49,305 Created temporary directory: /tmp/pip-unpack-wn2i_xe5
2021-05-08T04:46:49,306 Building wheels for collected packages: ebi-eva-common-pyutils
2021-05-08T04:46:49,315   Created temporary directory: /tmp/pip-wheel-jymx7bj4
2021-05-08T04:46:49,316   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-05-08T04:46:49,317   Destination directory: /tmp/pip-wheel-jymx7bj4
2021-05-08T04:46:49,318   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5u7yhb6w/ebi-eva-common-pyutils_0e3efc5d0d9f4b04840a8eb7f2ac280a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5u7yhb6w/ebi-eva-common-pyutils_0e3efc5d0d9f4b04840a8eb7f2ac280a/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jymx7bj4
2021-05-08T04:46:51,722   running bdist_wheel
2021-05-08T04:46:51,738   running build
2021-05-08T04:46:51,739   running build_py
2021-05-08T04:46:52,096   creating build
2021-05-08T04:46:52,097   creating build/lib
2021-05-08T04:46:52,099   creating build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,102   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,106   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,111   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,116   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,120   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,125   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,131   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,138   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,144   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,150   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,155   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-08T04:46:52,161   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-05-08T04:46:52,163   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-05-08T04:46:52,167   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-05-08T04:46:52,176   creating build/lib/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,179   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,186   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,191   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,197   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-05-08T04:46:52,199   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-05-08T04:46:52,204   copying ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-05-08T04:46:52,210   creating build/lib/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,213   copying ebi_eva_common_pyutils/reference/assembly.py -> build/lib/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,221   copying ebi_eva_common_pyutils/reference/__init__.py -> build/lib/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,227   copying ebi_eva_common_pyutils/reference/sequence.py -> build/lib/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,234   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-05-08T04:46:52,237   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-05-08T04:46:52,242   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-05-08T04:46:52,249   creating build/lib/ebi_eva_common_pyutils/assembly
2021-05-08T04:46:52,252   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-05-08T04:46:52,257   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-05-08T04:46:52,276   installing to build/bdist.linux-armv7l/wheel
2021-05-08T04:46:52,277   running install
2021-05-08T04:46:52,279   running install_lib
2021-05-08T04:46:52,287   creating build/bdist.linux-armv7l
2021-05-08T04:46:52,288   creating build/bdist.linux-armv7l/wheel
2021-05-08T04:46:52,292   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,295   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-05-08T04:46:52,298   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-05-08T04:46:52,302   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-05-08T04:46:52,308   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,311   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,318   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,321   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,329   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,334   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-08T04:46:52,342   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-05-08T04:46:52,344   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-05-08T04:46:52,351   copying build/lib/ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-05-08T04:46:52,358   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,364   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,370   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,375   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,383   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,386   copying build/lib/ebi_eva_common_pyutils/reference/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,394   copying build/lib/ebi_eva_common_pyutils/reference/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,399   copying build/lib/ebi_eva_common_pyutils/reference/sequence.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-08T04:46:52,405   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,413   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-05-08T04:46:52,416   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-05-08T04:46:52,421   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-05-08T04:46:52,427   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,433   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,439   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,446   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-05-08T04:46:52,448   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-05-08T04:46:52,455   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-05-08T04:46:52,460   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-08T04:46:52,465   running install_egg_info
2021-05-08T04:46:52,516   running egg_info
2021-05-08T04:46:52,518   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-05-08T04:46:52,522   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-05-08T04:46:52,524   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-05-08T04:46:52,527   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-05-08T04:46:52,544   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-08T04:46:52,557   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-08T04:46:52,560   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.12-py3.5.egg-info
2021-05-08T04:46:52,586   running install_scripts
2021-05-08T04:46:52,788   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.12.dist-info/WHEEL
2021-05-08T04:46:53,126   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-05-08T04:46:53,131   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.12-py3-none-any.whl size=32901 sha256=eed4ff0e2403e8711ca0609f56e40d5cc407d9bb624111b635caae9348ebb4b0
2021-05-08T04:46:53,132   Stored in directory: /tmp/pip-ephem-wheel-cache-8b8vysse/wheels/e4/af/14/413fa7f484cad5816962f511a74c17b76b6cc8542be19a337c
2021-05-08T04:46:53,151 Successfully built ebi-eva-common-pyutils
2021-05-08T04:46:53,162 Removed build tracker: '/tmp/pip-req-tracker-63h0bdeb'