2021-05-11T11:52:59,803 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-05-11T11:53:00,847 Created temporary directory: /tmp/pip-ephem-wheel-cache-uxbw3li3
2021-05-11T11:53:00,855 Created temporary directory: /tmp/pip-req-tracker-hfb_srqb
2021-05-11T11:53:00,857 Initialized build tracking at /tmp/pip-req-tracker-hfb_srqb
2021-05-11T11:53:00,858 Created build tracker: /tmp/pip-req-tracker-hfb_srqb
2021-05-11T11:53:00,858 Entered build tracker: /tmp/pip-req-tracker-hfb_srqb
2021-05-11T11:53:00,861 Created temporary directory: /tmp/pip-wheel-ckh6ug3v
2021-05-11T11:53:00,959 1 location(s) to search for versions of rcsb-utils-io:
2021-05-11T11:53:00,959 * https://pypi.org/simple/rcsb-utils-io/
2021-05-11T11:53:00,960 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-utils-io/
2021-05-11T11:53:00,962 Getting page https://pypi.org/simple/rcsb-utils-io/
2021-05-11T11:53:00,965 Found index url https://pypi.org/simple
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2021-05-11T11:53:01,653   Found link https://files.pythonhosted.org/packages/5c/45/33be2731d7e32dda6e43bb3c30b8663b0cab75f7c6d887f78305a6bbbc31/rcsb.utils.io-0.84.tar.gz#sha256=01a91f5c2c53f2eb03349c15b970e55c7ef59289ae7b21c04ff4bc9cfdfacb7f (from https://pypi.org/simple/rcsb-utils-io/), version: 0.84
2021-05-11T11:53:01,654   Found link https://files.pythonhosted.org/packages/be/d5/ef96a6daac0922a71ba8bba2ceaa80f3c31dddf2edee2bed6c0dbfb4d4b3/rcsb.utils.io-0.85.tar.gz#sha256=340ae463fe301b5fb441ab7d20590d205785cb85dd7fa7062c041400d41a7785 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.85
2021-05-11T11:53:01,655   Found link https://files.pythonhosted.org/packages/66/88/491404d1520c2f43b0b63cd4ae4f80893ce809ecfe1f492be44fed4d5bce/rcsb.utils.io-0.86.tar.gz#sha256=cfc6124828c0d30ceb133f6c55d6a82dee9046c92fea699f891d3809fbcbf98b (from https://pypi.org/simple/rcsb-utils-io/), version: 0.86
2021-05-11T11:53:01,656   Found link https://files.pythonhosted.org/packages/07/a1/f0418a61eb598e3a7eca4a510f7d10ad3068714795fda318acf9dae06b14/rcsb.utils.io-0.87.tar.gz#sha256=4ddd4e3ab56898bbf9a9a6fbcd97197b7787209d9aa9735a052073e6e7a46006 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.87
2021-05-11T11:53:01,657   Found link https://files.pythonhosted.org/packages/63/50/51561974332cede710526ffe7b04044cb1f8489cbced008175b8fa33b676/rcsb.utils.io-0.88.tar.gz#sha256=438235865135f06f1171f764af0501dcffdb7dfd90ade55a5f732acbe84d9127 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.88
2021-05-11T11:53:01,658   Found link https://files.pythonhosted.org/packages/76/e8/cfadda42810526c8e13302a013f2e406da5bcc04568a7a7c0e8522881a90/rcsb.utils.io-0.89.tar.gz#sha256=43b45b7eddab477c8d348d31ca81af82946b3990c47298330136e86ec49de21d (from https://pypi.org/simple/rcsb-utils-io/), version: 0.89
2021-05-11T11:53:01,659   Found link https://files.pythonhosted.org/packages/ef/d9/bb3c093beb77fde8e276f3683310c304bdaa05bd09f725338ce48a954536/rcsb.utils.io-0.90.tar.gz#sha256=304f81533c0f1761220bc0defb971f9487ce099a58bf2ecc232c3773a3446b2c (from https://pypi.org/simple/rcsb-utils-io/), version: 0.90
2021-05-11T11:53:01,660   Found link https://files.pythonhosted.org/packages/0f/cc/903d34c5275a4bce0df3e0d4e749210444842d73f67899c9d75d8e16556b/rcsb.utils.io-0.91.tar.gz#sha256=9d19ffacef0ff8e4ec05432aeb10dd191afd4f0c220dc0c541c2a1a0faa9ffb8 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.91
2021-05-11T11:53:01,661   Found link https://files.pythonhosted.org/packages/73/0a/121275705deb6ca9341aabeb7d8e5295150353ba74f5e6a9902cd72873db/rcsb.utils.io-0.92.tar.gz#sha256=bc1cc50b7752d631b73b4accccd36003d20f2253a3c37bedba95e786e4897e8d (from https://pypi.org/simple/rcsb-utils-io/), version: 0.92
2021-05-11T11:53:01,662   Found link https://files.pythonhosted.org/packages/4b/a0/927f5344d2ce0e937f7682d305c62de945799d09148a7633e4d154b87119/rcsb.utils.io-0.93.tar.gz#sha256=680d76bb52cbd8e832c21b73dfea9a4df59d008d163a620307f613cf94353db1 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.93
2021-05-11T11:53:01,663   Found link https://files.pythonhosted.org/packages/b5/9d/a7680f1a20d9c53ad32e7a4d297897e2c43259d46e98b82788fe713ce650/rcsb.utils.io-0.94.tar.gz#sha256=76217444e94b8e61abc02302fa4a568a787d59a784b8bc2e285377bee4dd240e (from https://pypi.org/simple/rcsb-utils-io/), version: 0.94
2021-05-11T11:53:01,664   Found link https://files.pythonhosted.org/packages/1d/89/83e1b43f37119230edc73a21271edca1ea15541805a7a6f2c75ca62cfb57/rcsb.utils.io-0.95.tar.gz#sha256=97860914579377fa06396ba69d4a25bf27c19394bb8eae3b4ce68d6996e9e4a6 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.95
2021-05-11T11:53:01,666   Found link https://files.pythonhosted.org/packages/b7/4c/b8f291404b3f9c4cc298ed2b3ec290723e579d6d8b63b572b43772e02e96/rcsb.utils.io-0.96.tar.gz#sha256=ed789fc14a40b1297a46a18c11bd41465d21b8db4e77d94ad40499e788cdc80a (from https://pypi.org/simple/rcsb-utils-io/), version: 0.96
2021-05-11T11:53:01,667   Found link https://files.pythonhosted.org/packages/ca/d9/4edc06fd4a6060b13a4946c46a7c1a14874e6fea31e588fc6f5be5d97c1a/rcsb.utils.io-0.97.tar.gz#sha256=c8c0426e9f5c867968aeb7aa5fd2ad48cef782853a1612d5906d53a767862243 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.97
2021-05-11T11:53:01,668   Found link https://files.pythonhosted.org/packages/66/2c/30caec87cb56569b6fab30e0ab986807cae29771cb3596ad27298958b431/rcsb.utils.io-0.98.tar.gz#sha256=c5316601a36c627f3468fc8acae6336dc251037a26b0596354907a75354c14fd (from https://pypi.org/simple/rcsb-utils-io/), version: 0.98
2021-05-11T11:53:01,669   Found link https://files.pythonhosted.org/packages/05/96/ef59130abd39948d7e21adbedc4b3bbf1531a8ead93aad5b24e5938d253b/rcsb.utils.io-0.99.tar.gz#sha256=5ad80c48b234b905ad4eb8012536ef4ed5e52aab6060a604c0466cdf544fe647 (from https://pypi.org/simple/rcsb-utils-io/), version: 0.99
2021-05-11T11:53:01,670   Found link https://files.pythonhosted.org/packages/f4/fe/005801477f635b30d0e7a0106ada96c18f45e1350c7831dc1073a54a1a5f/rcsb.utils.io-1.0.tar.gz#sha256=2227bf3379f4347252709b0baad388e61d513bf881be3f1270acf3be7888fa33 (from https://pypi.org/simple/rcsb-utils-io/), version: 1.0
2021-05-11T11:53:01,671   Found link https://files.pythonhosted.org/packages/62/62/eaad668ad4f124a8fed7a43bcd54c9b9121d331dde9429cb31a8cb6f6963/rcsb.utils.io-1.1.tar.gz#sha256=adfd2ec2056013da534e0ee5df809a298a56608072ca1fe81e16646d1d05b261 (from https://pypi.org/simple/rcsb-utils-io/), version: 1.1
2021-05-11T11:53:01,673   Found link https://files.pythonhosted.org/packages/31/02/097cc64a99eb91ba3328207989ebd27a391108cbc77ae1ca4857607ec217/rcsb.utils.io-1.11.tar.gz#sha256=63088ed9cb0ef0c78cc8e49f8baae76efde12476e0001268e1da9184a1412f10 (from https://pypi.org/simple/rcsb-utils-io/), version: 1.11
2021-05-11T11:53:01,674   Found link https://files.pythonhosted.org/packages/c1/0a/925fb78709a9ba11836cb33d6336cbd697db923958fe6308971bc959e05d/rcsb.utils.io-1.12.tar.gz#sha256=344f9a0a0fdc3a90d17668bd3f3c562919f3435fab8b03484138806216814750 (from https://pypi.org/simple/rcsb-utils-io/), version: 1.12
2021-05-11T11:53:01,742 Given no hashes to check 1 links for project 'rcsb-utils-io': discarding no candidates
2021-05-11T11:53:01,785 Collecting rcsb-utils-io==1.12
2021-05-11T11:53:01,794   Created temporary directory: /tmp/pip-unpack-ca45o6l2
2021-05-11T11:53:01,872   Downloading rcsb.utils.io-1.12.tar.gz (31 kB)
2021-05-11T11:53:02,299   Added rcsb-utils-io==1.12 from https://files.pythonhosted.org/packages/c1/0a/925fb78709a9ba11836cb33d6336cbd697db923958fe6308971bc959e05d/rcsb.utils.io-1.12.tar.gz#sha256=344f9a0a0fdc3a90d17668bd3f3c562919f3435fab8b03484138806216814750 to build tracker '/tmp/pip-req-tracker-hfb_srqb'
2021-05-11T11:53:02,303     Running setup.py (path:/tmp/pip-wheel-ckh6ug3v/rcsb-utils-io_e3612d60325c40d08f8de2eca45c2193/setup.py) egg_info for package rcsb-utils-io
2021-05-11T11:53:02,306     Created temporary directory: /tmp/pip-pip-egg-info-l81qelpc
2021-05-11T11:53:02,307     Running command python setup.py egg_info
2021-05-11T11:53:05,249     running egg_info
2021-05-11T11:53:05,263     creating /tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info
2021-05-11T11:53:05,275     writing top-level names to /tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/top_level.txt
2021-05-11T11:53:05,284     writing dependency_links to /tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/dependency_links.txt
2021-05-11T11:53:05,291     writing requirements to /tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/requires.txt
2021-05-11T11:53:05,296     writing entry points to /tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/entry_points.txt
2021-05-11T11:53:05,306     writing /tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/PKG-INFO
2021-05-11T11:53:05,327     writing manifest file '/tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/SOURCES.txt'
2021-05-11T11:53:05,789     reading manifest file '/tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/SOURCES.txt'
2021-05-11T11:53:05,794     reading manifest template 'MANIFEST.in'
2021-05-11T11:53:05,807     writing manifest file '/tmp/pip-pip-egg-info-l81qelpc/rcsb.utils.io.egg-info/SOURCES.txt'
2021-05-11T11:53:05,937   Source in /tmp/pip-wheel-ckh6ug3v/rcsb-utils-io_e3612d60325c40d08f8de2eca45c2193 has version 1.12, which satisfies requirement rcsb-utils-io==1.12 from https://files.pythonhosted.org/packages/c1/0a/925fb78709a9ba11836cb33d6336cbd697db923958fe6308971bc959e05d/rcsb.utils.io-1.12.tar.gz#sha256=344f9a0a0fdc3a90d17668bd3f3c562919f3435fab8b03484138806216814750
2021-05-11T11:53:05,939   Removed rcsb-utils-io==1.12 from https://files.pythonhosted.org/packages/c1/0a/925fb78709a9ba11836cb33d6336cbd697db923958fe6308971bc959e05d/rcsb.utils.io-1.12.tar.gz#sha256=344f9a0a0fdc3a90d17668bd3f3c562919f3435fab8b03484138806216814750 from build tracker '/tmp/pip-req-tracker-hfb_srqb'
2021-05-11T11:53:05,949 Created temporary directory: /tmp/pip-unpack-ay11pxho
2021-05-11T11:53:05,950 Building wheels for collected packages: rcsb-utils-io
2021-05-11T11:53:05,956   Created temporary directory: /tmp/pip-wheel-19hc6b0k
2021-05-11T11:53:05,957   Building wheel for rcsb-utils-io (setup.py): started
2021-05-11T11:53:05,958   Destination directory: /tmp/pip-wheel-19hc6b0k
2021-05-11T11:53:05,958   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ckh6ug3v/rcsb-utils-io_e3612d60325c40d08f8de2eca45c2193/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ckh6ug3v/rcsb-utils-io_e3612d60325c40d08f8de2eca45c2193/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-19hc6b0k
2021-05-11T11:53:08,794   running bdist_wheel
2021-05-11T11:53:08,814   running build
2021-05-11T11:53:08,814   running build_py
2021-05-11T11:53:09,128   creating build
2021-05-11T11:53:09,129   creating build/lib
2021-05-11T11:53:09,130   creating build/lib/rcsb
2021-05-11T11:53:09,136   copying rcsb/__init__.py -> build/lib/rcsb
2021-05-11T11:53:09,141   creating build/lib/rcsb/utils
2021-05-11T11:53:09,144   copying rcsb/utils/__init__.py -> build/lib/rcsb/utils
2021-05-11T11:53:09,155   creating build/lib/rcsb/utils/io
2021-05-11T11:53:09,160   copying rcsb/utils/io/ProcessStatusUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,167   copying rcsb/utils/io/__init__.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,172   copying rcsb/utils/io/FileUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,180   copying rcsb/utils/io/IoUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,189   copying rcsb/utils/io/MarshalUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,200   copying rcsb/utils/io/CryptUtils.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,207   copying rcsb/utils/io/HashableDict.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,215   copying rcsb/utils/io/StashUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,222   copying rcsb/utils/io/decorators.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,232   copying rcsb/utils/io/TimeUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,244   copying rcsb/utils/io/IndexUtils.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,253   copying rcsb/utils/io/CacheUtils.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,259   copying rcsb/utils/io/ExecUtils.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,267   copying rcsb/utils/io/SingletonClass.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,275   copying rcsb/utils/io/FastaUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,289   copying rcsb/utils/io/UrlRequestUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,303   copying rcsb/utils/io/SftpUtil.py -> build/lib/rcsb/utils/io
2021-05-11T11:53:09,337   installing to build/bdist.linux-armv7l/wheel
2021-05-11T11:53:09,338   running install
2021-05-11T11:53:09,339   running install_lib
2021-05-11T11:53:09,356   creating build/bdist.linux-armv7l
2021-05-11T11:53:09,359   creating build/bdist.linux-armv7l/wheel
2021-05-11T11:53:09,368   creating build/bdist.linux-armv7l/wheel/rcsb
2021-05-11T11:53:09,371   copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb
2021-05-11T11:53:09,378   creating build/bdist.linux-armv7l/wheel/rcsb/utils
2021-05-11T11:53:09,380   copying build/lib/rcsb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils
2021-05-11T11:53:09,390   creating build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,393   copying build/lib/rcsb/utils/io/ProcessStatusUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,406   copying build/lib/rcsb/utils/io/__init__.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,413   copying build/lib/rcsb/utils/io/FileUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,421   copying build/lib/rcsb/utils/io/IoUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,434   copying build/lib/rcsb/utils/io/MarshalUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,446   copying build/lib/rcsb/utils/io/CryptUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,456   copying build/lib/rcsb/utils/io/HashableDict.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,462   copying build/lib/rcsb/utils/io/StashUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,468   copying build/lib/rcsb/utils/io/decorators.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,475   copying build/lib/rcsb/utils/io/TimeUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,482   copying build/lib/rcsb/utils/io/IndexUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,493   copying build/lib/rcsb/utils/io/CacheUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,503   copying build/lib/rcsb/utils/io/ExecUtils.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,510   copying build/lib/rcsb/utils/io/SingletonClass.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,522   copying build/lib/rcsb/utils/io/FastaUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,533   copying build/lib/rcsb/utils/io/UrlRequestUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,543   copying build/lib/rcsb/utils/io/SftpUtil.py -> build/bdist.linux-armv7l/wheel/rcsb/utils/io
2021-05-11T11:53:09,552   running install_egg_info
2021-05-11T11:53:09,608   running egg_info
2021-05-11T11:53:09,609   writing top-level names to rcsb.utils.io.egg-info/top_level.txt
2021-05-11T11:53:09,613   writing rcsb.utils.io.egg-info/PKG-INFO
2021-05-11T11:53:09,618   writing dependency_links to rcsb.utils.io.egg-info/dependency_links.txt
2021-05-11T11:53:09,620   writing entry points to rcsb.utils.io.egg-info/entry_points.txt
2021-05-11T11:53:09,622   writing requirements to rcsb.utils.io.egg-info/requires.txt
2021-05-11T11:53:09,640   reading manifest file 'rcsb.utils.io.egg-info/SOURCES.txt'
2021-05-11T11:53:09,649   reading manifest template 'MANIFEST.in'
2021-05-11T11:53:09,658   writing manifest file 'rcsb.utils.io.egg-info/SOURCES.txt'
2021-05-11T11:53:09,660   Copying rcsb.utils.io.egg-info to build/bdist.linux-armv7l/wheel/rcsb.utils.io-1.12-py3.5.egg-info
2021-05-11T11:53:09,719   running install_scripts
2021-05-11T11:53:09,988   creating build/bdist.linux-armv7l/wheel/rcsb.utils.io-1.12.dist-info/WHEEL
2021-05-11T11:53:10,333   Building wheel for rcsb-utils-io (setup.py): finished with status 'done'
2021-05-11T11:53:10,337   Created wheel for rcsb-utils-io: filename=rcsb.utils.io-1.12-py2.py3-none-any.whl size=35854 sha256=dbde282d37ee981d18557bbc80f723e8d9522e63dd6a7c4c98e25d3ae1ef1291
2021-05-11T11:53:10,338   Stored in directory: /tmp/pip-ephem-wheel-cache-uxbw3li3/wheels/d0/18/52/08d39621476c37a6b916fe324af56b02eb426d20ac2b9d9f3b
2021-05-11T11:53:10,356 Successfully built rcsb-utils-io
2021-05-11T11:53:10,368 Removed build tracker: '/tmp/pip-req-tracker-hfb_srqb'