2021-05-14T12:55:30,435 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-05-14T12:55:31,129 Created temporary directory: /tmp/pip-ephem-wheel-cache-i6aalwjt
2021-05-14T12:55:31,134 Created temporary directory: /tmp/pip-req-tracker-_8tywz4j
2021-05-14T12:55:31,135 Initialized build tracking at /tmp/pip-req-tracker-_8tywz4j
2021-05-14T12:55:31,135 Created build tracker: /tmp/pip-req-tracker-_8tywz4j
2021-05-14T12:55:31,136 Entered build tracker: /tmp/pip-req-tracker-_8tywz4j
2021-05-14T12:55:31,137 Created temporary directory: /tmp/pip-wheel-wzgrp3ag
2021-05-14T12:55:31,200 1 location(s) to search for versions of adaptivepele:
2021-05-14T12:55:31,200 * https://pypi.org/simple/adaptivepele/
2021-05-14T12:55:31,201 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2021-05-14T12:55:31,204 Getting page https://pypi.org/simple/adaptivepele/
2021-05-14T12:55:31,208 Found index url https://pypi.org/simple
2021-05-14T12:55:31,532   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2021-05-14T12:55:31,533   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2021-05-14T12:55:31,534   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2021-05-14T12:55:31,535   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2021-05-14T12:55:31,536   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2021-05-14T12:55:31,536   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb (from https://pypi.org/simple/adaptivepele/), version: 1.7
2021-05-14T12:55:31,537   Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 (from https://pypi.org/simple/adaptivepele/), version: 1.7.1
2021-05-14T12:55:31,567 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2021-05-14T12:55:31,597 Collecting adaptivepele==1.7.1
2021-05-14T12:55:31,601   Created temporary directory: /tmp/pip-unpack-wp6x7ba5
2021-05-14T12:55:32,338   Downloading AdaptivePELE-1.7.1.tar.gz (3.0 MB)
2021-05-14T12:55:35,848   Added adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 to build tracker '/tmp/pip-req-tracker-_8tywz4j'
2021-05-14T12:55:35,852     Running setup.py (path:/tmp/pip-wheel-wzgrp3ag/adaptivepele_83aad112f6e9454a9b53edfcdd267fad/setup.py) egg_info for package adaptivepele
2021-05-14T12:55:35,855     Created temporary directory: /tmp/pip-pip-egg-info-wwuv25d1
2021-05-14T12:55:35,856     Running command python setup.py egg_info
2021-05-14T12:55:39,426     running egg_info
2021-05-14T12:55:39,431     creating /tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info
2021-05-14T12:55:39,435     writing dependency_links to /tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info/dependency_links.txt
2021-05-14T12:55:39,437     writing top-level names to /tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info/top_level.txt
2021-05-14T12:55:39,440     writing /tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info/PKG-INFO
2021-05-14T12:55:39,445     writing requirements to /tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info/requires.txt
2021-05-14T12:55:39,451     writing manifest file '/tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T12:55:39,818     reading manifest file '/tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T12:55:39,821     reading manifest template 'MANIFEST.in'
2021-05-14T12:55:39,925     writing manifest file '/tmp/pip-pip-egg-info-wwuv25d1/AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T12:55:40,163   Source in /tmp/pip-wheel-wzgrp3ag/adaptivepele_83aad112f6e9454a9b53edfcdd267fad has version 1.7.1, which satisfies requirement adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155
2021-05-14T12:55:40,165   Removed adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 from build tracker '/tmp/pip-req-tracker-_8tywz4j'
2021-05-14T12:55:40,175 Created temporary directory: /tmp/pip-unpack-yait3ihf
2021-05-14T12:55:40,176 Building wheels for collected packages: adaptivepele
2021-05-14T12:55:40,185   Created temporary directory: /tmp/pip-wheel-t0w7much
2021-05-14T12:55:40,186   Building wheel for adaptivepele (setup.py): started
2021-05-14T12:55:40,187   Destination directory: /tmp/pip-wheel-t0w7much
2021-05-14T12:55:40,187   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wzgrp3ag/adaptivepele_83aad112f6e9454a9b53edfcdd267fad/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wzgrp3ag/adaptivepele_83aad112f6e9454a9b53edfcdd267fad/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-t0w7much
2021-05-14T12:55:43,768   running bdist_wheel
2021-05-14T12:55:43,779   running build
2021-05-14T12:55:43,780   running build_py
2021-05-14T12:55:44,161   creating build
2021-05-14T12:55:44,162   creating build/lib.linux-armv7l-3.5
2021-05-14T12:55:44,163   creating build/lib.linux-armv7l-3.5/AdaptivePELE
2021-05-14T12:55:44,166   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-05-14T12:55:44,171   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-05-14T12:55:44,176   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-05-14T12:55:44,180   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-05-14T12:55:44,189   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE
2021-05-14T12:55:44,196   creating build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2021-05-14T12:55:44,199   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2021-05-14T12:55:44,205   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/atomset
2021-05-14T12:55:44,213   creating build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,216   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,225   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,229   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,234   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,240   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,244   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,250   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,257   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,263   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,266   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/tests
2021-05-14T12:55:44,275   creating build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-05-14T12:55:44,277   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-05-14T12:55:44,282   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-05-14T12:55:44,287   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-05-14T12:55:44,293   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-05-14T12:55:44,306   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/spawning
2021-05-14T12:55:44,310   creating build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-05-14T12:55:44,312   copying AdaptivePELE/constants/buildEnvironments.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-05-14T12:55:44,317   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-05-14T12:55:44,321   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-05-14T12:55:44,327   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-05-14T12:55:44,333   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/constants
2021-05-14T12:55:44,349   creating build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,351   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,357   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,362   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,366   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,372   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,378   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,384   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,391   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,396   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,403   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,411   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,416   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,422   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,429   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,436   copying AdaptivePELE/analysis/calculateDistances.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,443   copying AdaptivePELE/analysis/reportSimulation.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,449   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,454   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,460   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,467   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,474   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,479   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,485   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,492   copying AdaptivePELE/analysis/simulationToCsv.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,497   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,504   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,510   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,515   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,522   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,527   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,534   copying AdaptivePELE/analysis/unbinding.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,540   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,545   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,551   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,557   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,561   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,565   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,569   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,574   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,580   copying AdaptivePELE/analysis/cluster.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,588   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,593   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,599   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,604   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,610   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,618   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/analysis
2021-05-14T12:55:44,625   creating build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-05-14T12:55:44,627   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-05-14T12:55:44,633   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-05-14T12:55:44,640   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/validator
2021-05-14T12:55:44,646   creating build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-05-14T12:55:44,649   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-05-14T12:55:44,664   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-05-14T12:55:44,668   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-05-14T12:55:44,677   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/simulation
2021-05-14T12:55:44,685   creating build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,688   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,694   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,701   copying AdaptivePELE/utilities/conda_deployment.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,705   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,709   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,719   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,723   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/utilities
2021-05-14T12:55:44,735   creating build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,737   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,742   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,747   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,754   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,760   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,765   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,773   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,779   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,785   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,791   copying AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,796   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,803   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,810   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,815   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,820   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,826   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,832   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,839   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:55:44,848   creating build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-05-14T12:55:44,851   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-05-14T12:55:44,856   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-05-14T12:55:44,860   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-05-14T12:55:44,873   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-05-14T12:55:44,879   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.5/AdaptivePELE/clustering
2021-05-14T12:55:44,913   running build_ext
2021-05-14T12:55:44,923   cythoning AdaptivePELE/atomset/atomset.pyx to AdaptivePELE/atomset/atomset.c
2021-05-14T12:55:46,524   /usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-wzgrp3ag/adaptivepele_83aad112f6e9454a9b53edfcdd267fad/AdaptivePELE/atomset/atomset.pxd
2021-05-14T12:55:46,526     tree = Parsing.p_module(s, pxd, full_module_name)
2021-05-14T12:55:54,288   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2021-05-14T12:55:54,291   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2021-05-14T12:55:54,294   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2021-05-14T12:55:54,295   building 'AdaptivePELE.atomset.atomset' extension
2021-05-14T12:55:54,296   creating build/temp.linux-armv7l-3.5
2021-05-14T12:55:54,297   creating build/temp.linux-armv7l-3.5/AdaptivePELE
2021-05-14T12:55:54,299   creating build/temp.linux-armv7l-3.5/AdaptivePELE/atomset
2021-05-14T12:55:54,300   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o
2021-05-14T12:55:55,173   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-05-14T12:55:55,174                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T12:55:55,175                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T12:55:55,175                    from AdaptivePELE/atomset/atomset.c:612:
2021-05-14T12:55:55,176   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T12:55:55,176    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T12:55:55,176     ^~~~~~~
2021-05-14T12:56:57,200   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so
2021-05-14T12:56:57,752   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2021-05-14T12:56:57,753   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2021-05-14T12:56:58,402   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-05-14T12:56:58,403                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T12:56:58,404                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T12:56:58,405                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2021-05-14T12:56:58,405   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T12:56:58,406    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T12:56:58,406     ^~~~~~~
2021-05-14T12:57:21,072   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so
2021-05-14T12:57:21,366   building 'AdaptivePELE.atomset.RMSDCalculator' extension
2021-05-14T12:57:21,367   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o
2021-05-14T12:57:21,950   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-05-14T12:57:21,951                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T12:57:21,951                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T12:57:21,952                    from AdaptivePELE/atomset/RMSDCalculator.c:610:
2021-05-14T12:57:21,952   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T12:57:21,953    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T12:57:21,954     ^~~~~~~
2021-05-14T12:57:35,432   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so
2021-05-14T12:57:35,688   building 'AdaptivePELE.freeEnergies.utils' extension
2021-05-14T12:57:35,690   creating build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies
2021-05-14T12:57:35,692   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/freeEnergies -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o
2021-05-14T12:57:36,313   In file included from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
2021-05-14T12:57:36,314                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T12:57:36,315                    from /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T12:57:36,315                    from AdaptivePELE/freeEnergies/utils.c:610:
2021-05-14T12:57:36,316   /usr/local/lib/python3.5/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T12:57:36,317    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T12:57:36,317     ^~~~~~~
2021-05-14T12:58:03,525   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fdebug-prefix-map=/build/python3.5-Fw9FZV/python3.5-3.5.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so
2021-05-14T12:58:03,868   installing to build/bdist.linux-armv7l/wheel
2021-05-14T12:58:03,869   running install
2021-05-14T12:58:03,871   running install_lib
2021-05-14T12:58:03,879   creating build/bdist.linux-armv7l
2021-05-14T12:58:03,880   creating build/bdist.linux-armv7l/wheel
2021-05-14T12:58:03,884   creating build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T12:58:03,887   copying build/lib.linux-armv7l-3.5/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T12:58:04,025   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T12:58:04,028   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/atomset.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T12:58:04,176   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/setup.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T12:58:04,183   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T12:58:04,188   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/RMSDCalculator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T12:58:04,226   copying build/lib.linux-armv7l-3.5/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T12:58:04,291   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,294   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,303   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,308   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testReporter.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,312   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,318   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testMD_CUDA.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,322   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,328   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,339   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,344   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,348   copying build/lib.linux-armv7l-3.5/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T12:58:04,353   copying build/lib.linux-armv7l-3.5/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T12:58:04,359   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T12:58:04,361   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T12:58:04,365   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T12:58:04,371   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T12:58:04,378   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T12:58:04,389   copying build/lib.linux-armv7l-3.5/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T12:58:04,393   copying build/lib.linux-armv7l-3.5/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T12:58:04,398   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T12:58:04,400   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/buildEnvironments.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T12:58:04,405   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T12:58:04,410   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T12:58:04,417   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T12:58:04,424   copying build/lib.linux-armv7l-3.5/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T12:58:04,432   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,434   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,441   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,445   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,451   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/count_clusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,458   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,464   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,470   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/calculateSASAvalues.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,475   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,480   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/standarize_MD_energies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,485   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/interactivePlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,493   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,500   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analysis_utils.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,506   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,514   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,520   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/calculateDistances.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,526   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/reportSimulation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,533   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,540   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,545   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/trajectory_processing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,552   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,558   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/simple_postprocessing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,564   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/extract_ligand_traj.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,570   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/autoCorrelation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,575   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/simulationToCsv.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,580   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/bestStructs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,586   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,592   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/convertTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,599   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,607   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,613   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,619   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/unbinding.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,624   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,629   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/generateBox.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,637   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,644   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,651   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/crossValidationClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,657   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,661   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/filter_by_radius.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,666   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,672   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,680   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/dehidratate_and_align.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,686   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,692   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,696   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,700   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,705   copying build/lib.linux-armv7l-3.5/AdaptivePELE/analysis/selectOnPlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T12:58:04,713   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T12:58:04,715   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T12:58:04,722   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T12:58:04,729   copying build/lib.linux-armv7l-3.5/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T12:58:04,735   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T12:58:04,736   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T12:58:04,749   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T12:58:04,753   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/openmm_simulations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T12:58:04,764   copying build/lib.linux-armv7l-3.5/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T12:58:04,769   copying build/lib.linux-armv7l-3.5/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T12:58:04,779   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,781   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,786   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/PDBLoader.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,794   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/conda_deployment.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,800   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/generate_topology_object.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,806   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,815   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,820   copying build/lib.linux-armv7l-3.5/AdaptivePELE/utilities/synchronization.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T12:58:04,827   copying build/lib.linux-armv7l-3.5/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T12:58:04,835   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,838   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,844   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,851   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,860   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,865   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,871   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,878   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,885   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,891   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,897   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,902   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,909   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,916   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,921   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,926   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:04,932   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/utils.cpython-35m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:05,008   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:05,014   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:05,021   copying build/lib.linux-armv7l-3.5/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T12:58:05,028   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T12:58:05,030   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T12:58:05,034   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T12:58:05,038   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T12:58:05,053   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T12:58:05,059   copying build/lib.linux-armv7l-3.5/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T12:58:05,063   running install_egg_info
2021-05-14T12:58:05,119   running egg_info
2021-05-14T12:58:05,122   writing top-level names to AdaptivePELE.egg-info/top_level.txt
2021-05-14T12:58:05,125   writing requirements to AdaptivePELE.egg-info/requires.txt
2021-05-14T12:58:05,127   writing AdaptivePELE.egg-info/PKG-INFO
2021-05-14T12:58:05,133   writing dependency_links to AdaptivePELE.egg-info/dependency_links.txt
2021-05-14T12:58:05,229   reading manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T12:58:05,250   reading manifest template 'MANIFEST.in'
2021-05-14T12:58:05,367   writing manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T12:58:05,371   Copying AdaptivePELE.egg-info to build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7.1-py3.5.egg-info
2021-05-14T12:58:05,399   running install_scripts
2021-05-14T12:58:05,530   creating build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7.1.dist-info/WHEEL
2021-05-14T12:58:08,029   Building wheel for adaptivepele (setup.py): finished with status 'done'
2021-05-14T12:58:08,058   Created wheel for adaptivepele: filename=AdaptivePELE-1.7.1-cp35-cp35m-linux_armv7l.whl size=1409339 sha256=0208e16fec704fe2c144f233c3bcad9bd699844776c4d69a84cbeea650e527cf
2021-05-14T12:58:08,059   Stored in directory: /tmp/pip-ephem-wheel-cache-i6aalwjt/wheels/0d/d9/9a/4e21c32636281eef8146c7090f0ed9ca3c1df663a394bec95b
2021-05-14T12:58:08,088 Successfully built adaptivepele
2021-05-14T12:58:08,338 Removed build tracker: '/tmp/pip-req-tracker-_8tywz4j'