2021-05-14T13:02:48,168 Created temporary directory: /tmp/pip-ephem-wheel-cache-b7ayjpce
2021-05-14T13:02:48,172 Created temporary directory: /tmp/pip-req-tracker-37lkp5c2
2021-05-14T13:02:48,173 Initialized build tracking at /tmp/pip-req-tracker-37lkp5c2
2021-05-14T13:02:48,173 Created build tracker: /tmp/pip-req-tracker-37lkp5c2
2021-05-14T13:02:48,173 Entered build tracker: /tmp/pip-req-tracker-37lkp5c2
2021-05-14T13:02:48,174 Created temporary directory: /tmp/pip-wheel-cikphzo1
2021-05-14T13:02:48,208 1 location(s) to search for versions of adaptivepele:
2021-05-14T13:02:48,208 * https://pypi.org/simple/adaptivepele/
2021-05-14T13:02:48,208 Fetching project page and analyzing links: https://pypi.org/simple/adaptivepele/
2021-05-14T13:02:48,209 Getting page https://pypi.org/simple/adaptivepele/
2021-05-14T13:02:48,210 Found index url https://pypi.org/simple
2021-05-14T13:02:48,299   Found link https://files.pythonhosted.org/packages/33/ee/476a691d254663e61362e5c2754180ff0b92980e6db1afc829265f001706/AdaptivePELE-1.5.1.tar.gz#sha256=5f96081e47a08fa4040ba21a477ba77d590f7feba4980aef9468305fe9f5f282 (from https://pypi.org/simple/adaptivepele/), version: 1.5.1
2021-05-14T13:02:48,299   Found link https://files.pythonhosted.org/packages/d9/82/be65cbae39642401f6e6923e5511fd466d107920ee9673bb84581a243a4e/AdaptivePELE-1.5.2.tar.gz#sha256=7df75c5c57821492d1ba86e44d41b65e6a9105afe6048e85e993741579683848 (from https://pypi.org/simple/adaptivepele/), version: 1.5.2
2021-05-14T13:02:48,299   Found link https://files.pythonhosted.org/packages/48/3b/f12bfdcfd7f0fdcb2f58d659ff94c26666767eec4ca8454750a3241c395e/AdaptivePELE-1.6.tar.gz#sha256=afc51a35222361e6c0caf880e1d52e91b5658dbe4740f82a3460a97ebaa48bf5 (from https://pypi.org/simple/adaptivepele/), version: 1.6
2021-05-14T13:02:48,300   Found link https://files.pythonhosted.org/packages/d0/1b/f731952d133f4a684ae4376f67513af80d1f759b9ef4d6137767e0fc8ed9/AdaptivePELE-1.6.2.tar.gz#sha256=01891c877f6615a876c61c6bf1d68930d4af63750eb3f1a4e7e23ff0f962bbd5 (from https://pypi.org/simple/adaptivepele/), version: 1.6.2
2021-05-14T13:02:48,300   Found link https://files.pythonhosted.org/packages/25/2c/65b787dc210294855b8f27abeb4a7761f25fce34e0b8bfd56779c679440d/AdaptivePELE-1.6.3.tar.gz#sha256=34be232bc04bde2dcc4ebd900dd9c71e6f25eed93b7c875463c07d3dd8ce1aa9 (from https://pypi.org/simple/adaptivepele/), version: 1.6.3
2021-05-14T13:02:48,300   Found link https://files.pythonhosted.org/packages/2b/34/d4545814438fa2992d83f5be0389f6465ab3e542ada0c02f90dbc4cc5695/AdaptivePELE-1.7.tar.gz#sha256=21d8643eb2fbf9ffe733a996fa8851cd569d9ca6f77f303211813eeb856bc5eb (from https://pypi.org/simple/adaptivepele/), version: 1.7
2021-05-14T13:02:48,300   Found link https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 (from https://pypi.org/simple/adaptivepele/), version: 1.7.1
2021-05-14T13:02:48,301 Skipping link: not a file: https://pypi.org/simple/adaptivepele/
2021-05-14T13:02:48,315 Given no hashes to check 1 links for project 'adaptivepele': discarding no candidates
2021-05-14T13:02:48,330 Collecting adaptivepele==1.7.1
2021-05-14T13:02:48,332   Created temporary directory: /tmp/pip-unpack-778r4m2s
2021-05-14T13:02:48,376   Downloading AdaptivePELE-1.7.1.tar.gz (3.0 MB)
2021-05-14T13:02:49,546   Added adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 to build tracker '/tmp/pip-req-tracker-37lkp5c2'
2021-05-14T13:02:49,547     Running setup.py (path:/tmp/pip-wheel-cikphzo1/adaptivepele_f8ebe87ac49a4a5d8d7b9edcf44d6db9/setup.py) egg_info for package adaptivepele
2021-05-14T13:02:49,548     Created temporary directory: /tmp/pip-pip-egg-info-dnwg_jy2
2021-05-14T13:02:49,548     Running command python setup.py egg_info
2021-05-14T13:02:50,935     Warning: 'classifiers' should be a list, got type 'tuple'
2021-05-14T13:02:51,054     running egg_info
2021-05-14T13:02:51,057     creating /tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info
2021-05-14T13:02:51,058     writing /tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info/PKG-INFO
2021-05-14T13:02:51,062     writing dependency_links to /tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info/dependency_links.txt
2021-05-14T13:02:51,064     writing requirements to /tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info/requires.txt
2021-05-14T13:02:51,065     writing top-level names to /tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info/top_level.txt
2021-05-14T13:02:51,067     writing manifest file '/tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T13:02:51,215     reading manifest file '/tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T13:02:51,217     reading manifest template 'MANIFEST.in'
2021-05-14T13:02:51,264     writing manifest file '/tmp/pip-pip-egg-info-dnwg_jy2/AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T13:02:51,367   Source in /tmp/pip-wheel-cikphzo1/adaptivepele_f8ebe87ac49a4a5d8d7b9edcf44d6db9 has version 1.7.1, which satisfies requirement adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155
2021-05-14T13:02:51,368   Removed adaptivepele==1.7.1 from https://files.pythonhosted.org/packages/21/7d/8c8eb27cbe21dfcfbf80d5f16c889ee2d5bf0eec8dd8bcd03567d06bef98/AdaptivePELE-1.7.1.tar.gz#sha256=4d6c1a5eecbc779828f162541ee7e308190152c4a871569d66fb3f7ab0673155 from build tracker '/tmp/pip-req-tracker-37lkp5c2'
2021-05-14T13:02:51,373 Created temporary directory: /tmp/pip-unpack-dsut1y1z
2021-05-14T13:02:51,373 Building wheels for collected packages: adaptivepele
2021-05-14T13:02:51,378   Created temporary directory: /tmp/pip-wheel-842el24b
2021-05-14T13:02:51,379   Building wheel for adaptivepele (setup.py): started
2021-05-14T13:02:51,379   Destination directory: /tmp/pip-wheel-842el24b
2021-05-14T13:02:51,379   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cikphzo1/adaptivepele_f8ebe87ac49a4a5d8d7b9edcf44d6db9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cikphzo1/adaptivepele_f8ebe87ac49a4a5d8d7b9edcf44d6db9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-842el24b
2021-05-14T13:02:52,925   Warning: 'classifiers' should be a list, got type 'tuple'
2021-05-14T13:02:53,055   running bdist_wheel
2021-05-14T13:02:53,060   running build
2021-05-14T13:02:53,060   running build_py
2021-05-14T13:02:53,184   creating build
2021-05-14T13:02:53,184   creating build/lib.linux-armv7l-3.7
2021-05-14T13:02:53,185   creating build/lib.linux-armv7l-3.7/AdaptivePELE
2021-05-14T13:02:53,187   copying AdaptivePELE/automateRoundsAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2021-05-14T13:02:53,189   copying AdaptivePELE/makeRelease.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2021-05-14T13:02:53,192   copying AdaptivePELE/runAllTests.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2021-05-14T13:02:53,194   copying AdaptivePELE/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2021-05-14T13:02:53,196   copying AdaptivePELE/adaptiveSampling.py -> build/lib.linux-armv7l-3.7/AdaptivePELE
2021-05-14T13:02:53,203   creating build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,204   copying AdaptivePELE/analysis/plot3DNetwork.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,206   copying AdaptivePELE/analysis/makePNGs.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,209   copying AdaptivePELE/analysis/correctRMSD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,211   copying AdaptivePELE/analysis/cluster.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,214   copying AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,217   copying AdaptivePELE/analysis/reportSimulation.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,219   copying AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,222   copying AdaptivePELE/analysis/bestStructs.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,225   copying AdaptivePELE/analysis/extract_ligand_traj.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,227   copying AdaptivePELE/analysis/compareClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,230   copying AdaptivePELE/analysis/count_clusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,233   copying AdaptivePELE/analysis/analysis_utils.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,235   copying AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,237   copying AdaptivePELE/analysis/filter_by_radius.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,240   copying AdaptivePELE/analysis/trajectory_processing.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,243   copying AdaptivePELE/analysis/autoCorrelation.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,245   copying AdaptivePELE/analysis/pathwayRMSD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,247   copying AdaptivePELE/analysis/unbinding.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,250   copying AdaptivePELE/analysis/histCM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,252   copying AdaptivePELE/analysis/analyseClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,254   copying AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,257   copying AdaptivePELE/analysis/plotAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,260   copying AdaptivePELE/analysis/plotRMSF.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,262   copying AdaptivePELE/analysis/writeNetworkFiles.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,265   copying AdaptivePELE/analysis/writeClusteringStructures.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,267   copying AdaptivePELE/analysis/plotSpawningClusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,269   copying AdaptivePELE/analysis/standarize_MD_energies.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,272   copying AdaptivePELE/analysis/analyse.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,275   copying AdaptivePELE/analysis/interactivePlot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,277   copying AdaptivePELE/analysis/simple_postprocessing.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,280   copying AdaptivePELE/analysis/selectOnPlot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,283   copying AdaptivePELE/analysis/networkCM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,285   copying AdaptivePELE/analysis/calculateSASAvalues.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,288   copying AdaptivePELE/analysis/findfirstbindingevent.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,290   copying AdaptivePELE/analysis/calculateDistances.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,292   copying AdaptivePELE/analysis/splitTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,295   copying AdaptivePELE/analysis/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,297   copying AdaptivePELE/analysis/generateBox.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,299   copying AdaptivePELE/analysis/addRejectedSteps.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,302   copying AdaptivePELE/analysis/convertTrajectory.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,304   copying AdaptivePELE/analysis/simulationToCsv.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,306   copying AdaptivePELE/analysis/crossValidationClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,309   copying AdaptivePELE/analysis/numberOfClusters.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,313   copying AdaptivePELE/analysis/dehidratate_and_align.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,315   copying AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,318   copying AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/analysis
2021-05-14T13:02:53,321   creating build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,322   copying AdaptivePELE/utilities/conda_deployment.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,325   copying AdaptivePELE/utilities/generate_topology_object.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,327   copying AdaptivePELE/utilities/PDBLoader.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,330   copying AdaptivePELE/utilities/utilities.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,334   copying AdaptivePELE/utilities/clusteringUtilities.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,336   copying AdaptivePELE/utilities/synchronization.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,339   copying AdaptivePELE/utilities/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/utilities
2021-05-14T13:02:53,342   creating build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2021-05-14T13:02:53,343   copying AdaptivePELE/clustering/clusteringTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2021-05-14T13:02:53,345   copying AdaptivePELE/clustering/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2021-05-14T13:02:53,347   copying AdaptivePELE/clustering/thresholdcalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2021-05-14T13:02:53,350   copying AdaptivePELE/clustering/clustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2021-05-14T13:02:53,354   copying AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/clustering
2021-05-14T13:02:53,357   creating build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2021-05-14T13:02:53,358   copying AdaptivePELE/constants/blockNames.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2021-05-14T13:02:53,362   copying AdaptivePELE/constants/symmetries.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2021-05-14T13:02:53,366   copying AdaptivePELE/constants/buildEnvironments.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2021-05-14T13:02:53,368   copying AdaptivePELE/constants/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2021-05-14T13:02:53,371   copying AdaptivePELE/constants/constants.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/constants
2021-05-14T13:02:53,374   creating build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,375   copying AdaptivePELE/tests/testReporter.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,378   copying AdaptivePELE/tests/testMD.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,380   copying AdaptivePELE/tests/testAtomset.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,383   copying AdaptivePELE/tests/testMD_CUDA.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,386   copying AdaptivePELE/tests/testClustering.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,388   copying AdaptivePELE/tests/testDensityCalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,391   copying AdaptivePELE/tests/testThresholdcalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,394   copying AdaptivePELE/tests/testAdaptiveSampling.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,396   copying AdaptivePELE/tests/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,398   copying AdaptivePELE/tests/testSpawning.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/tests
2021-05-14T13:02:53,403   creating build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2021-05-14T13:02:53,404   copying AdaptivePELE/simulation/simulationrunner.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2021-05-14T13:02:53,409   copying AdaptivePELE/simulation/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2021-05-14T13:02:53,411   copying AdaptivePELE/simulation/simulationTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2021-05-14T13:02:53,414   copying AdaptivePELE/simulation/openmm_simulations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/simulation
2021-05-14T13:02:53,419   creating build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2021-05-14T13:02:53,420   copying AdaptivePELE/atomset/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2021-05-14T13:02:53,423   copying AdaptivePELE/atomset/setup.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/atomset
2021-05-14T13:02:53,428   creating build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2021-05-14T13:02:53,429   copying AdaptivePELE/validator/controlFileValidator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2021-05-14T13:02:53,432   copying AdaptivePELE/validator/validatorBlockNames.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2021-05-14T13:02:53,435   copying AdaptivePELE/validator/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/validator
2021-05-14T13:02:53,438   creating build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2021-05-14T13:02:53,439   copying AdaptivePELE/spawning/densitycalculatortypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2021-05-14T13:02:53,442   copying AdaptivePELE/spawning/densitycalculator.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2021-05-14T13:02:53,445   copying AdaptivePELE/spawning/spawning.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2021-05-14T13:02:53,450   copying AdaptivePELE/spawning/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2021-05-14T13:02:53,452   copying AdaptivePELE/spawning/spawningTypes.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/spawning
2021-05-14T13:02:53,457   creating build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,458   copying AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,461   copying AdaptivePELE/freeEnergies/cluster.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,463   copying AdaptivePELE/freeEnergies/estimate.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,466   copying AdaptivePELE/freeEnergies/extractCoords.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,470   copying AdaptivePELE/freeEnergies/extendTrajectories.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,473   copying AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,475   copying AdaptivePELE/freeEnergies/estimateDG.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,478   copying AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,481   copying AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,483   copying AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,485   copying AdaptivePELE/freeEnergies/computeDGGrid.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,488   copying AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,490   copying AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,493   copying AdaptivePELE/freeEnergies/computeDeltaG.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,496   copying AdaptivePELE/freeEnergies/__init__.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,498   copying AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,500   copying AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,503   copying AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:02:53,518   running build_ext
2021-05-14T13:02:53,524   cythoning AdaptivePELE/atomset/atomset.pyx to AdaptivePELE/atomset/atomset.c
2021-05-14T13:02:54,139   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-cikphzo1/adaptivepele_f8ebe87ac49a4a5d8d7b9edcf44d6db9/AdaptivePELE/atomset/atomset.pxd
2021-05-14T13:02:54,139     tree = Parsing.p_module(s, pxd, full_module_name)
2021-05-14T13:02:56,551   skipping 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.c' Cython extension (up-to-date)
2021-05-14T13:02:56,552   skipping 'AdaptivePELE/atomset/RMSDCalculator.c' Cython extension (up-to-date)
2021-05-14T13:02:56,553   skipping 'AdaptivePELE/freeEnergies/utils.c' Cython extension (up-to-date)
2021-05-14T13:02:56,554   building 'AdaptivePELE.atomset.atomset' extension
2021-05-14T13:02:56,554   creating build/temp.linux-armv7l-3.7
2021-05-14T13:02:56,555   creating build/temp.linux-armv7l-3.7/AdaptivePELE
2021-05-14T13:02:56,555   creating build/temp.linux-armv7l-3.7/AdaptivePELE/atomset
2021-05-14T13:02:56,556   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/atomset.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.o
2021-05-14T13:02:56,991   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-05-14T13:02:56,991                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T13:02:56,991                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T13:02:56,991                    from AdaptivePELE/atomset/atomset.c:612:
2021-05-14T13:02:56,992   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T13:02:56,992    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T13:02:56,992     ^~~~~~~
2021-05-14T13:03:27,426   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.cpython-37m-arm-linux-gnueabihf.so
2021-05-14T13:03:27,684   building 'AdaptivePELE.atomset.SymmetryContactMapEvaluator' extension
2021-05-14T13:03:27,684   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/SymmetryContactMapEvaluator.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o
2021-05-14T13:03:28,040   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-05-14T13:03:28,041                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T13:03:28,041                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T13:03:28,041                    from AdaptivePELE/atomset/SymmetryContactMapEvaluator.c:610:
2021-05-14T13:03:28,041   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T13:03:28,041    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T13:03:28,041     ^~~~~~~
2021-05-14T13:03:39,596   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-arm-linux-gnueabihf.so
2021-05-14T13:03:39,766   building 'AdaptivePELE.atomset.RMSDCalculator' extension
2021-05-14T13:03:39,767   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/atomset -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/atomset/RMSDCalculator.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.o
2021-05-14T13:03:40,124   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-05-14T13:03:40,124                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T13:03:40,124                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T13:03:40,124                    from AdaptivePELE/atomset/RMSDCalculator.c:610:
2021-05-14T13:03:40,124   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T13:03:40,124    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T13:03:40,125     ^~~~~~~
2021-05-14T13:03:47,335   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.cpython-37m-arm-linux-gnueabihf.so
2021-05-14T13:03:47,480   building 'AdaptivePELE.freeEnergies.utils' extension
2021-05-14T13:03:47,481   creating build/temp.linux-armv7l-3.7/AdaptivePELE/freeEnergies
2021-05-14T13:03:47,481   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IAdaptivePELE -IAdaptivePELE/freeEnergies -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c AdaptivePELE/freeEnergies/utils.c -o build/temp.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.o
2021-05-14T13:03:47,860   In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944,
2021-05-14T13:03:47,860                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-05-14T13:03:47,860                    from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-05-14T13:03:47,860                    from AdaptivePELE/freeEnergies/utils.c:610:
2021-05-14T13:03:47,861   /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-05-14T13:03:47,861    #warning "Using deprecated NumPy API, disable it with " \
2021-05-14T13:03:47,861     ^~~~~~~
2021-05-14T13:04:02,452   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.o -o build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.cpython-37m-arm-linux-gnueabihf.so
2021-05-14T13:04:02,652   installing to build/bdist.linux-armv7l/wheel
2021-05-14T13:04:02,652   running install
2021-05-14T13:04:02,654   running install_lib
2021-05-14T13:04:02,658   creating build/bdist.linux-armv7l
2021-05-14T13:04:02,659   creating build/bdist.linux-armv7l/wheel
2021-05-14T13:04:02,661   creating build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T13:04:02,664   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,665   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plot3DNetwork.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,667   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/makePNGs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,670   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/correctRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,673   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,676   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/foldersFirstBindingEvent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,679   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/reportSimulation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,681   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/clusters_lagtime_grid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,684   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/bestStructs.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,687   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/extract_ligand_traj.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,689   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/compareClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,692   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/count_clusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,695   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/analysis_utils.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,697   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,700   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/filter_by_radius.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,702   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/trajectory_processing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,705   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/autoCorrelation.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,708   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/pathwayRMSD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,710   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/unbinding.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,713   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/histCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,715   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/analyseClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,718   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/writeTrajToSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,720   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plotAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,723   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plotRMSF.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,726   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/writeNetworkFiles.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,728   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/writeClusteringStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,730   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/plotSpawningClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,733   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/standarize_MD_energies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,736   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/analyse.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,738   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/interactivePlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,741   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/simple_postprocessing.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,743   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/selectOnPlot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,746   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/networkCM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,749   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/calculateSASAvalues.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,752   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/findfirstbindingevent.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,754   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/calculateDistances.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,757   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/splitTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,759   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,761   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/generateBox.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,764   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/addRejectedSteps.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,766   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/convertTrajectory.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,769   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/simulationToCsv.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,771   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/crossValidationClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,773   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/numberOfClusters.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,776   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/dehidratate_and_align.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,779   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/clusterAdaptiveRun.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,782   copying build/lib.linux-armv7l-3.7/AdaptivePELE/analysis/identifyClusterSnapshot.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/analysis
2021-05-14T13:04:02,784   copying build/lib.linux-armv7l-3.7/AdaptivePELE/automateRoundsAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T13:04:02,787   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,788   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/conda_deployment.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,791   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/generate_topology_object.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,793   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/PDBLoader.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,796   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/utilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,800   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/clusteringUtilities.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,803   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/synchronization.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,806   copying build/lib.linux-armv7l-3.7/AdaptivePELE/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/utilities
2021-05-14T13:04:02,809   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T13:04:02,810   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/clusteringTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T13:04:02,813   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T13:04:02,815   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/thresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T13:04:02,817   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/clustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T13:04:02,823   copying build/lib.linux-armv7l-3.7/AdaptivePELE/clustering/thresholdcalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/clustering
2021-05-14T13:04:02,825   copying build/lib.linux-armv7l-3.7/AdaptivePELE/makeRelease.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T13:04:02,829   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T13:04:02,831   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/blockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T13:04:02,834   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/symmetries.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T13:04:02,836   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/buildEnvironments.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T13:04:02,839   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T13:04:02,842   copying build/lib.linux-armv7l-3.7/AdaptivePELE/constants/constants.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/constants
2021-05-14T13:04:02,846   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,847   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testReporter.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,851   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testMD.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,854   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testAtomset.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,858   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testMD_CUDA.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,861   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testClustering.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,864   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testDensityCalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,868   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testThresholdcalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,870   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testAdaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,874   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,876   copying build/lib.linux-armv7l-3.7/AdaptivePELE/tests/testSpawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/tests
2021-05-14T13:04:02,879   copying build/lib.linux-armv7l-3.7/AdaptivePELE/runAllTests.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T13:04:02,883   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T13:04:02,885   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/simulationrunner.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T13:04:02,890   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T13:04:02,893   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/simulationTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T13:04:02,895   copying build/lib.linux-armv7l-3.7/AdaptivePELE/simulation/openmm_simulations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/simulation
2021-05-14T13:04:02,900   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T13:04:02,902   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/atomset.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T13:04:02,945   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/RMSDCalculator.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T13:04:02,961   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T13:04:02,981   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T13:04:02,985   copying build/lib.linux-armv7l-3.7/AdaptivePELE/atomset/setup.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/atomset
2021-05-14T13:04:02,990   copying build/lib.linux-armv7l-3.7/AdaptivePELE/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T13:04:02,995   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T13:04:02,997   copying build/lib.linux-armv7l-3.7/AdaptivePELE/validator/controlFileValidator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T13:04:03,000   copying build/lib.linux-armv7l-3.7/AdaptivePELE/validator/validatorBlockNames.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T13:04:03,004   copying build/lib.linux-armv7l-3.7/AdaptivePELE/validator/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/validator
2021-05-14T13:04:03,006   copying build/lib.linux-armv7l-3.7/AdaptivePELE/adaptiveSampling.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE
2021-05-14T13:04:03,012   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T13:04:03,014   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/densitycalculatortypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T13:04:03,020   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/densitycalculator.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T13:04:03,026   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/spawning.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T13:04:03,030   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T13:04:03,033   copying build/lib.linux-armv7l-3.7/AdaptivePELE/spawning/spawningTypes.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/spawning
2021-05-14T13:04:03,041   creating build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,044   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/ownBuildMSM.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,048   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/cluster.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,051   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/estimate.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,055   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/extractCoords.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,060   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/extendTrajectories.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,063   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/getRepresentativeStructures.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,066   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/estimateDG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,071   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/runMarkovChainModel.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,075   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,078   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/utils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,108   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,111   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/computeDGGrid.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,114   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/prepareMSMFolders.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,116   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/checkDetailedBalance.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,119   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/computeDeltaG.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,122   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/__init__.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,124   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/calculateDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,127   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,130   copying build/lib.linux-armv7l-3.7/AdaptivePELE/freeEnergies/estimateDGAdaptive.py -> build/bdist.linux-armv7l/wheel/AdaptivePELE/freeEnergies
2021-05-14T13:04:03,132   running install_egg_info
2021-05-14T13:04:03,162   running egg_info
2021-05-14T13:04:03,163   writing AdaptivePELE.egg-info/PKG-INFO
2021-05-14T13:04:03,166   writing dependency_links to AdaptivePELE.egg-info/dependency_links.txt
2021-05-14T13:04:03,168   writing requirements to AdaptivePELE.egg-info/requires.txt
2021-05-14T13:04:03,170   writing top-level names to AdaptivePELE.egg-info/top_level.txt
2021-05-14T13:04:03,214   reading manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T13:04:03,223   reading manifest template 'MANIFEST.in'
2021-05-14T13:04:03,273   writing manifest file 'AdaptivePELE.egg-info/SOURCES.txt'
2021-05-14T13:04:03,276   Copying AdaptivePELE.egg-info to build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7.1-py3.7.egg-info
2021-05-14T13:04:03,290   running install_scripts
2021-05-14T13:04:03,343   creating build/bdist.linux-armv7l/wheel/AdaptivePELE-1.7.1.dist-info/WHEEL
2021-05-14T13:04:03,346   creating '/tmp/pip-wheel-842el24b/AdaptivePELE-1.7.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-05-14T13:04:03,349   adding 'AdaptivePELE/__init__.py'
2021-05-14T13:04:03,355   adding 'AdaptivePELE/adaptiveSampling.py'
2021-05-14T13:04:03,357   adding 'AdaptivePELE/automateRoundsAdaptive.py'
2021-05-14T13:04:03,359   adding 'AdaptivePELE/makeRelease.py'
2021-05-14T13:04:03,361   adding 'AdaptivePELE/runAllTests.py'
2021-05-14T13:04:03,364   adding 'AdaptivePELE/analysis/__init__.py'
2021-05-14T13:04:03,366   adding 'AdaptivePELE/analysis/addRejectedSteps.py'
2021-05-14T13:04:03,368   adding 'AdaptivePELE/analysis/analyse.py'
2021-05-14T13:04:03,370   adding 'AdaptivePELE/analysis/analyseClustering.py'
2021-05-14T13:04:03,372   adding 'AdaptivePELE/analysis/analysis_utils.py'
2021-05-14T13:04:03,374   adding 'AdaptivePELE/analysis/autoCorrelation.py'
2021-05-14T13:04:03,376   adding 'AdaptivePELE/analysis/backtrackAdaptiveTrajectory.py'
2021-05-14T13:04:03,379   adding 'AdaptivePELE/analysis/bestStructs.py'
2021-05-14T13:04:03,381   adding 'AdaptivePELE/analysis/calculateDistances.py'
2021-05-14T13:04:03,384   adding 'AdaptivePELE/analysis/calculateSASAvalues.py'
2021-05-14T13:04:03,386   adding 'AdaptivePELE/analysis/cluster.py'
2021-05-14T13:04:03,389   adding 'AdaptivePELE/analysis/clusterAdaptiveRun.py'
2021-05-14T13:04:03,391   adding 'AdaptivePELE/analysis/clusters_lagtime_grid.py'
2021-05-14T13:04:03,394   adding 'AdaptivePELE/analysis/compareClustering.py'
2021-05-14T13:04:03,395   adding 'AdaptivePELE/analysis/convertTrajectory.py'
2021-05-14T13:04:03,398   adding 'AdaptivePELE/analysis/correctRMSD.py'
2021-05-14T13:04:03,400   adding 'AdaptivePELE/analysis/count_clusters.py'
2021-05-14T13:04:03,402   adding 'AdaptivePELE/analysis/crossValidationClustering.py'
2021-05-14T13:04:03,404   adding 'AdaptivePELE/analysis/dehidratate_and_align.py'
2021-05-14T13:04:03,405   adding 'AdaptivePELE/analysis/extract_ligand_traj.py'
2021-05-14T13:04:03,407   adding 'AdaptivePELE/analysis/filter_by_radius.py'
2021-05-14T13:04:03,409   adding 'AdaptivePELE/analysis/findfirstbindingevent.py'
2021-05-14T13:04:03,411   adding 'AdaptivePELE/analysis/foldersFirstBindingEvent.py'
2021-05-14T13:04:03,412   adding 'AdaptivePELE/analysis/generateBox.py'
2021-05-14T13:04:03,414   adding 'AdaptivePELE/analysis/histCM.py'
2021-05-14T13:04:03,416   adding 'AdaptivePELE/analysis/identifyClusterSnapshot.py'
2021-05-14T13:04:03,419   adding 'AdaptivePELE/analysis/interactivePlot.py'
2021-05-14T13:04:03,421   adding 'AdaptivePELE/analysis/makePNGs.py'
2021-05-14T13:04:03,423   adding 'AdaptivePELE/analysis/networkCM.py'
2021-05-14T13:04:03,425   adding 'AdaptivePELE/analysis/numberOfClusters.py'
2021-05-14T13:04:03,426   adding 'AdaptivePELE/analysis/pathwayRMSD.py'
2021-05-14T13:04:03,428   adding 'AdaptivePELE/analysis/plot3DNetwork.py'
2021-05-14T13:04:03,430   adding 'AdaptivePELE/analysis/plotAdaptive.py'
2021-05-14T13:04:03,432   adding 'AdaptivePELE/analysis/plotRMSF.py'
2021-05-14T13:04:03,433   adding 'AdaptivePELE/analysis/plotSpawningClusters.py'
2021-05-14T13:04:03,435   adding 'AdaptivePELE/analysis/reportSimulation.py'
2021-05-14T13:04:03,437   adding 'AdaptivePELE/analysis/selectOnPlot.py'
2021-05-14T13:04:03,439   adding 'AdaptivePELE/analysis/simple_postprocessing.py'
2021-05-14T13:04:03,440   adding 'AdaptivePELE/analysis/simulationToCsv.py'
2021-05-14T13:04:03,441   adding 'AdaptivePELE/analysis/splitTrajectory.py'
2021-05-14T13:04:03,443   adding 'AdaptivePELE/analysis/standarize_MD_energies.py'
2021-05-14T13:04:03,445   adding 'AdaptivePELE/analysis/trajectory_processing.py'
2021-05-14T13:04:03,446   adding 'AdaptivePELE/analysis/unbinding.py'
2021-05-14T13:04:03,448   adding 'AdaptivePELE/analysis/writeClusteringStructures.py'
2021-05-14T13:04:03,449   adding 'AdaptivePELE/analysis/writeNetworkFiles.py'
2021-05-14T13:04:03,450   adding 'AdaptivePELE/analysis/writeTrajToSnapshot.py'
2021-05-14T13:04:03,539   adding 'AdaptivePELE/atomset/RMSDCalculator.cpython-37m-arm-linux-gnueabihf.so'
2021-05-14T13:04:03,678   adding 'AdaptivePELE/atomset/SymmetryContactMapEvaluator.cpython-37m-arm-linux-gnueabihf.so'
2021-05-14T13:04:03,684   adding 'AdaptivePELE/atomset/__init__.py'
2021-05-14T13:04:03,985   adding 'AdaptivePELE/atomset/atomset.cpython-37m-arm-linux-gnueabihf.so'
2021-05-14T13:04:03,997   adding 'AdaptivePELE/atomset/setup.py'
2021-05-14T13:04:03,999   adding 'AdaptivePELE/clustering/__init__.py'
2021-05-14T13:04:04,008   adding 'AdaptivePELE/clustering/clustering.py'
2021-05-14T13:04:04,010   adding 'AdaptivePELE/clustering/clusteringTypes.py'
2021-05-14T13:04:04,011   adding 'AdaptivePELE/clustering/thresholdcalculator.py'
2021-05-14T13:04:04,013   adding 'AdaptivePELE/clustering/thresholdcalculatortypes.py'
2021-05-14T13:04:04,015   adding 'AdaptivePELE/constants/__init__.py'
2021-05-14T13:04:04,016   adding 'AdaptivePELE/constants/blockNames.py'
2021-05-14T13:04:04,018   adding 'AdaptivePELE/constants/buildEnvironments.py'
2021-05-14T13:04:04,019   adding 'AdaptivePELE/constants/constants.py'
2021-05-14T13:04:04,021   adding 'AdaptivePELE/constants/symmetries.py'
2021-05-14T13:04:04,023   adding 'AdaptivePELE/freeEnergies/__init__.py'
2021-05-14T13:04:04,024   adding 'AdaptivePELE/freeEnergies/calculateAdaptiveDGiterations.py'
2021-05-14T13:04:04,026   adding 'AdaptivePELE/freeEnergies/calculateDGiterations.py'
2021-05-14T13:04:04,028   adding 'AdaptivePELE/freeEnergies/checkDetailedBalance.py'
2021-05-14T13:04:04,029   adding 'AdaptivePELE/freeEnergies/cluster.py'
2021-05-14T13:04:04,031   adding 'AdaptivePELE/freeEnergies/computeDGGrid.py'
2021-05-14T13:04:04,034   adding 'AdaptivePELE/freeEnergies/computeDeltaG.py'
2021-05-14T13:04:04,036   adding 'AdaptivePELE/freeEnergies/estimate.py'
2021-05-14T13:04:04,038   adding 'AdaptivePELE/freeEnergies/estimateDG.py'
2021-05-14T13:04:04,040   adding 'AdaptivePELE/freeEnergies/estimateDGAdaptive.py'
2021-05-14T13:04:04,042   adding 'AdaptivePELE/freeEnergies/extendTrajectories.py'
2021-05-14T13:04:04,046   adding 'AdaptivePELE/freeEnergies/extractCoords.py'
2021-05-14T13:04:04,048   adding 'AdaptivePELE/freeEnergies/getRepresentativeStructures.py'
2021-05-14T13:04:04,049   adding 'AdaptivePELE/freeEnergies/ownBuildMSM.py'
2021-05-14T13:04:04,051   adding 'AdaptivePELE/freeEnergies/prepareMSMFolders.py'
2021-05-14T13:04:04,053   adding 'AdaptivePELE/freeEnergies/runMarkovChainModel.py'
2021-05-14T13:04:04,054   adding 'AdaptivePELE/freeEnergies/utilitiesFreeEnergies.py'
2021-05-14T13:04:04,243   adding 'AdaptivePELE/freeEnergies/utils.cpython-37m-arm-linux-gnueabihf.so'
2021-05-14T13:04:04,250   adding 'AdaptivePELE/freeEnergies/writeExtractedCoordsAsPDB.py'
2021-05-14T13:04:04,252   adding 'AdaptivePELE/simulation/__init__.py'
2021-05-14T13:04:04,257   adding 'AdaptivePELE/simulation/openmm_simulations.py'
2021-05-14T13:04:04,259   adding 'AdaptivePELE/simulation/simulationTypes.py'
2021-05-14T13:04:04,267   adding 'AdaptivePELE/simulation/simulationrunner.py'
2021-05-14T13:04:04,270   adding 'AdaptivePELE/spawning/__init__.py'
2021-05-14T13:04:04,272   adding 'AdaptivePELE/spawning/densitycalculator.py'
2021-05-14T13:04:04,273   adding 'AdaptivePELE/spawning/densitycalculatortypes.py'
2021-05-14T13:04:04,279   adding 'AdaptivePELE/spawning/spawning.py'
2021-05-14T13:04:04,281   adding 'AdaptivePELE/spawning/spawningTypes.py'
2021-05-14T13:04:04,283   adding 'AdaptivePELE/tests/__init__.py'
2021-05-14T13:04:04,285   adding 'AdaptivePELE/tests/testAdaptiveSampling.py'
2021-05-14T13:04:04,288   adding 'AdaptivePELE/tests/testAtomset.py'
2021-05-14T13:04:04,289   adding 'AdaptivePELE/tests/testClustering.py'
2021-05-14T13:04:04,291   adding 'AdaptivePELE/tests/testDensityCalculator.py'
2021-05-14T13:04:04,292   adding 'AdaptivePELE/tests/testMD.py'
2021-05-14T13:04:04,293   adding 'AdaptivePELE/tests/testMD_CUDA.py'
2021-05-14T13:04:04,295   adding 'AdaptivePELE/tests/testReporter.py'
2021-05-14T13:04:04,297   adding 'AdaptivePELE/tests/testSpawning.py'
2021-05-14T13:04:04,298   adding 'AdaptivePELE/tests/testThresholdcalculator.py'
2021-05-14T13:04:04,303   adding 'AdaptivePELE/utilities/PDBLoader.py'
2021-05-14T13:04:04,305   adding 'AdaptivePELE/utilities/__init__.py'
2021-05-14T13:04:04,306   adding 'AdaptivePELE/utilities/clusteringUtilities.py'
2021-05-14T13:04:04,308   adding 'AdaptivePELE/utilities/conda_deployment.py'
2021-05-14T13:04:04,309   adding 'AdaptivePELE/utilities/generate_topology_object.py'
2021-05-14T13:04:04,311   adding 'AdaptivePELE/utilities/synchronization.py'
2021-05-14T13:04:04,316   adding 'AdaptivePELE/utilities/utilities.py'
2021-05-14T13:04:04,318   adding 'AdaptivePELE/validator/__init__.py'
2021-05-14T13:04:04,320   adding 'AdaptivePELE/validator/controlFileValidator.py'
2021-05-14T13:04:04,322   adding 'AdaptivePELE/validator/validatorBlockNames.py'
2021-05-14T13:04:04,324   adding 'AdaptivePELE-1.7.1.dist-info/METADATA'
2021-05-14T13:04:04,325   adding 'AdaptivePELE-1.7.1.dist-info/WHEEL'
2021-05-14T13:04:04,326   adding 'AdaptivePELE-1.7.1.dist-info/top_level.txt'
2021-05-14T13:04:04,328   adding 'AdaptivePELE-1.7.1.dist-info/RECORD'
2021-05-14T13:04:04,352   removing build/bdist.linux-armv7l/wheel
2021-05-14T13:04:04,694   Building wheel for adaptivepele (setup.py): finished with status 'done'
2021-05-14T13:04:04,719   Created wheel for adaptivepele: filename=AdaptivePELE-1.7.1-cp37-cp37m-linux_armv7l.whl size=1616025 sha256=3292b60b31353aeff2e1832f504c186c202729cba0948d5ed44a194fab7eb63d
2021-05-14T13:04:04,719   Stored in directory: /tmp/pip-ephem-wheel-cache-b7ayjpce/wheels/a6/22/08/ba17ebbbb30f832bfe9307a9e50e26fc5f6a53bc03f7d337a4
2021-05-14T13:04:04,735 Successfully built adaptivepele
2021-05-14T13:04:04,794 Removed build tracker: '/tmp/pip-req-tracker-37lkp5c2'