2021-05-20T14:21:30,114 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-05-20T14:21:30,835 Created temporary directory: /tmp/pip-ephem-wheel-cache-fyhl8l3p
2021-05-20T14:21:30,841 Created temporary directory: /tmp/pip-req-tracker-fedlxpd7
2021-05-20T14:21:30,842 Initialized build tracking at /tmp/pip-req-tracker-fedlxpd7
2021-05-20T14:21:30,842 Created build tracker: /tmp/pip-req-tracker-fedlxpd7
2021-05-20T14:21:30,842 Entered build tracker: /tmp/pip-req-tracker-fedlxpd7
2021-05-20T14:21:30,844 Created temporary directory: /tmp/pip-wheel-r9ognl3x
2021-05-20T14:21:30,909 1 location(s) to search for versions of ebi-eva-common-pyutils:
2021-05-20T14:21:30,909 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-05-20T14:21:30,909 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-05-20T14:21:30,912 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-05-20T14:21:30,916 Found index url https://pypi.org/simple
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2021-05-20T14:21:31,392 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-05-20T14:21:31,428 Collecting ebi-eva-common-pyutils==0.3.13
2021-05-20T14:21:31,431   Created temporary directory: /tmp/pip-unpack-3od5hfs9
2021-05-20T14:21:31,652   Downloading ebi_eva_common_pyutils-0.3.13.tar.gz (23 kB)
2021-05-20T14:21:31,897   Added ebi-eva-common-pyutils==0.3.13 from https://files.pythonhosted.org/packages/a6/7f/22f9f9552421c60c9474d3fe05fe34cb7df2ebaa72133c188c811af298da/ebi_eva_common_pyutils-0.3.13.tar.gz#sha256=81f1cb691661e8665319dc0715afb3c066962e92646b9fbf3dfcccda0335a40e to build tracker '/tmp/pip-req-tracker-fedlxpd7'
2021-05-20T14:21:31,900     Running setup.py (path:/tmp/pip-wheel-r9ognl3x/ebi-eva-common-pyutils_e741a9eea1974fe6b217ccd2151189da/setup.py) egg_info for package ebi-eva-common-pyutils
2021-05-20T14:21:31,901     Created temporary directory: /tmp/pip-pip-egg-info-t9jrbikv
2021-05-20T14:21:31,902     Running command python setup.py egg_info
2021-05-20T14:21:34,350     running egg_info
2021-05-20T14:21:34,357     creating /tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info
2021-05-20T14:21:34,361     writing /tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-05-20T14:21:34,365     writing top-level names to /tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-05-20T14:21:34,368     writing dependency_links to /tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-05-20T14:21:34,370     writing requirements to /tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info/requires.txt
2021-05-20T14:21:34,376     writing manifest file '/tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-20T14:21:34,740     reading manifest file '/tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-20T14:21:34,750     writing manifest file '/tmp/pip-pip-egg-info-t9jrbikv/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-20T14:21:34,884   Source in /tmp/pip-wheel-r9ognl3x/ebi-eva-common-pyutils_e741a9eea1974fe6b217ccd2151189da has version 0.3.13, which satisfies requirement ebi-eva-common-pyutils==0.3.13 from https://files.pythonhosted.org/packages/a6/7f/22f9f9552421c60c9474d3fe05fe34cb7df2ebaa72133c188c811af298da/ebi_eva_common_pyutils-0.3.13.tar.gz#sha256=81f1cb691661e8665319dc0715afb3c066962e92646b9fbf3dfcccda0335a40e
2021-05-20T14:21:34,886   Removed ebi-eva-common-pyutils==0.3.13 from https://files.pythonhosted.org/packages/a6/7f/22f9f9552421c60c9474d3fe05fe34cb7df2ebaa72133c188c811af298da/ebi_eva_common_pyutils-0.3.13.tar.gz#sha256=81f1cb691661e8665319dc0715afb3c066962e92646b9fbf3dfcccda0335a40e from build tracker '/tmp/pip-req-tracker-fedlxpd7'
2021-05-20T14:21:34,894 Created temporary directory: /tmp/pip-unpack-e0q0gvq4
2021-05-20T14:21:34,895 Building wheels for collected packages: ebi-eva-common-pyutils
2021-05-20T14:21:34,903   Created temporary directory: /tmp/pip-wheel-6p0ed8o9
2021-05-20T14:21:34,904   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-05-20T14:21:34,905   Destination directory: /tmp/pip-wheel-6p0ed8o9
2021-05-20T14:21:34,906   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-r9ognl3x/ebi-eva-common-pyutils_e741a9eea1974fe6b217ccd2151189da/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-r9ognl3x/ebi-eva-common-pyutils_e741a9eea1974fe6b217ccd2151189da/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6p0ed8o9
2021-05-20T14:21:37,271   running bdist_wheel
2021-05-20T14:21:37,287   running build
2021-05-20T14:21:37,288   running build_py
2021-05-20T14:21:37,630   creating build
2021-05-20T14:21:37,631   creating build/lib
2021-05-20T14:21:37,633   creating build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,635   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,639   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,644   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,648   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,653   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,657   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,662   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,667   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,673   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,680   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,685   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-05-20T14:21:37,692   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-05-20T14:21:37,694   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-05-20T14:21:37,699   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-05-20T14:21:37,705   creating build/lib/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,708   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,713   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,717   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,722   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-05-20T14:21:37,724   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-05-20T14:21:37,729   copying ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-05-20T14:21:37,738   creating build/lib/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,741   copying ebi_eva_common_pyutils/reference/assembly.py -> build/lib/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,748   copying ebi_eva_common_pyutils/reference/__init__.py -> build/lib/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,753   copying ebi_eva_common_pyutils/reference/sequence.py -> build/lib/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,759   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-05-20T14:21:37,761   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-05-20T14:21:37,765   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-05-20T14:21:37,770   creating build/lib/ebi_eva_common_pyutils/assembly
2021-05-20T14:21:37,772   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-05-20T14:21:37,776   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-05-20T14:21:37,796   installing to build/bdist.linux-armv7l/wheel
2021-05-20T14:21:37,798   running install
2021-05-20T14:21:37,799   running install_lib
2021-05-20T14:21:37,807   creating build/bdist.linux-armv7l
2021-05-20T14:21:37,808   creating build/bdist.linux-armv7l/wheel
2021-05-20T14:21:37,812   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,816   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-05-20T14:21:37,818   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-05-20T14:21:37,822   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-05-20T14:21:37,828   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,831   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,838   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,841   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,848   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,853   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-05-20T14:21:37,858   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-05-20T14:21:37,860   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-05-20T14:21:37,865   copying build/lib/ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-05-20T14:21:37,870   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,875   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,881   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,887   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,894   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,896   copying build/lib/ebi_eva_common_pyutils/reference/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,902   copying build/lib/ebi_eva_common_pyutils/reference/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,906   copying build/lib/ebi_eva_common_pyutils/reference/sequence.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-05-20T14:21:37,911   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,918   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-05-20T14:21:37,921   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-05-20T14:21:37,926   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-05-20T14:21:37,931   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,936   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,941   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,947   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-05-20T14:21:37,949   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-05-20T14:21:37,953   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-05-20T14:21:37,958   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-05-20T14:21:37,963   running install_egg_info
2021-05-20T14:21:38,018   running egg_info
2021-05-20T14:21:38,019   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-05-20T14:21:38,023   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-05-20T14:21:38,025   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-05-20T14:21:38,029   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-05-20T14:21:38,046   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-20T14:21:38,060   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-05-20T14:21:38,063   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.13-py3.5.egg-info
2021-05-20T14:21:38,086   running install_scripts
2021-05-20T14:21:38,294   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.13.dist-info/WHEEL
2021-05-20T14:21:38,617   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-05-20T14:21:38,622   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.13-py3-none-any.whl size=33112 sha256=99dc0c4934b617b995f220f28c6eeec821ccb65af1eea120d3c91d805554dd5e
2021-05-20T14:21:38,623   Stored in directory: /tmp/pip-ephem-wheel-cache-fyhl8l3p/wheels/c4/1e/34/120eda66c74f0f6d4bd01057b319d322990eae7b6f1250be8f
2021-05-20T14:21:38,652 Successfully built ebi-eva-common-pyutils
2021-05-20T14:21:38,663 Removed build tracker: '/tmp/pip-req-tracker-fedlxpd7'