2021-05-23T06:50:24,622 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-05-23T06:50:25,282 Created temporary directory: /tmp/pip-ephem-wheel-cache-ftw0jbg_ 2021-05-23T06:50:25,287 Created temporary directory: /tmp/pip-req-tracker-xwi3i5y0 2021-05-23T06:50:25,288 Initialized build tracking at /tmp/pip-req-tracker-xwi3i5y0 2021-05-23T06:50:25,289 Created build tracker: /tmp/pip-req-tracker-xwi3i5y0 2021-05-23T06:50:25,289 Entered build tracker: /tmp/pip-req-tracker-xwi3i5y0 2021-05-23T06:50:25,290 Created temporary directory: /tmp/pip-wheel-50pslqox 2021-05-23T06:50:25,363 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2021-05-23T06:50:25,367 2 location(s) to search for versions of apples: 2021-05-23T06:50:25,367 * https://pypi.org/simple/apples/ 2021-05-23T06:50:25,367 * https://pypi.ngc.nvidia.com/apples/ 2021-05-23T06:50:25,368 Fetching project page and analyzing links: https://pypi.org/simple/apples/ 2021-05-23T06:50:25,370 Getting page https://pypi.org/simple/apples/ 2021-05-23T06:50:25,374 Found index url https://pypi.org/simple 2021-05-23T06:50:25,698 Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1 2021-05-23T06:50:25,699 Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3 2021-05-23T06:50:25,700 Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4 2021-05-23T06:50:25,701 Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0 2021-05-23T06:50:25,702 Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0 2021-05-23T06:50:25,703 Found link https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df (from https://pypi.org/simple/apples/), version: 2.0.1 2021-05-23T06:50:25,703 Found link https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 (from https://pypi.org/simple/apples/), version: 2.0.2 2021-05-23T06:50:25,704 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/apples/ 2021-05-23T06:50:25,705 Getting page https://pypi.ngc.nvidia.com/apples/ 2021-05-23T06:50:25,708 Found index url https://pypi.ngc.nvidia.com 2021-05-23T06:50:26,738 Could not fetch URL https://pypi.ngc.nvidia.com/apples/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/apples/ - skipping 2021-05-23T06:50:26,775 Given no hashes to check 1 links for project 'apples': discarding no candidates 2021-05-23T06:50:26,807 Collecting apples==2.0.2 2021-05-23T06:50:26,810 Created temporary directory: /tmp/pip-unpack-10ai0t9f 2021-05-23T06:50:27,231 Downloading apples-2.0.2.tar.gz (757 kB) 2021-05-23T06:50:27,892 Added apples==2.0.2 from https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 to build tracker '/tmp/pip-req-tracker-xwi3i5y0' 2021-05-23T06:50:27,896 Running setup.py (path:/tmp/pip-wheel-50pslqox/apples_13256776355649858f9fe75f05fc13ef/setup.py) egg_info for package apples 2021-05-23T06:50:27,898 Created temporary directory: /tmp/pip-pip-egg-info-wupj8z9l 2021-05-23T06:50:27,900 Running command python setup.py egg_info 2021-05-23T06:50:30,104 running egg_info 2021-05-23T06:50:30,110 creating /tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info 2021-05-23T06:50:30,114 writing dependency_links to /tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info/dependency_links.txt 2021-05-23T06:50:30,118 writing top-level names to /tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info/top_level.txt 2021-05-23T06:50:30,121 writing requirements to /tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info/requires.txt 2021-05-23T06:50:30,125 writing /tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info/PKG-INFO 2021-05-23T06:50:30,134 writing manifest file '/tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info/SOURCES.txt' 2021-05-23T06:50:30,508 reading manifest file '/tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info/SOURCES.txt' 2021-05-23T06:50:30,512 reading manifest template 'MANIFEST.in' 2021-05-23T06:50:30,526 writing manifest file '/tmp/pip-pip-egg-info-wupj8z9l/apples.egg-info/SOURCES.txt' 2021-05-23T06:50:30,660 Source in /tmp/pip-wheel-50pslqox/apples_13256776355649858f9fe75f05fc13ef has version 2.0.2, which satisfies requirement apples==2.0.2 from https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 2021-05-23T06:50:30,662 Removed apples==2.0.2 from https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 from build tracker '/tmp/pip-req-tracker-xwi3i5y0' 2021-05-23T06:50:30,670 Created temporary directory: /tmp/pip-unpack-w45_3shu 2021-05-23T06:50:30,671 Building wheels for collected packages: apples 2021-05-23T06:50:30,680 Created temporary directory: /tmp/pip-wheel-h2lr3c10 2021-05-23T06:50:30,681 Building wheel for apples (setup.py): started 2021-05-23T06:50:30,681 Destination directory: /tmp/pip-wheel-h2lr3c10 2021-05-23T06:50:30,682 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-50pslqox/apples_13256776355649858f9fe75f05fc13ef/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-50pslqox/apples_13256776355649858f9fe75f05fc13ef/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-h2lr3c10 2021-05-23T06:50:32,828 running bdist_wheel 2021-05-23T06:50:32,843 running build 2021-05-23T06:50:32,844 running build_py 2021-05-23T06:50:33,183 creating build 2021-05-23T06:50:33,184 creating build/lib 2021-05-23T06:50:33,185 creating build/lib/apples 2021-05-23T06:50:33,188 copying apples/prepareTree.py -> build/lib/apples 2021-05-23T06:50:33,193 copying apples/FM.py -> build/lib/apples 2021-05-23T06:50:33,198 copying apples/Reference.py -> build/lib/apples 2021-05-23T06:50:33,203 copying apples/reestimateBackbone.py -> build/lib/apples 2021-05-23T06:50:33,209 copying apples/Algorithm.py -> build/lib/apples 2021-05-23T06:50:33,215 copying apples/Subtree.py -> build/lib/apples 2021-05-23T06:50:33,221 copying apples/OptionsBuild.py -> build/lib/apples 2021-05-23T06:50:33,227 copying apples/BME.py -> build/lib/apples 2021-05-23T06:50:33,234 copying apples/fasta2dic.py -> build/lib/apples 2021-05-23T06:50:33,240 copying apples/util.py -> build/lib/apples 2021-05-23T06:50:33,246 copying apples/BE.py -> build/lib/apples 2021-05-23T06:50:33,252 copying apples/OptionsRun.py -> build/lib/apples 2021-05-23T06:50:33,258 copying apples/PrioritySet.py -> build/lib/apples 2021-05-23T06:50:33,264 copying apples/distance.py -> build/lib/apples 2021-05-23T06:50:33,271 copying apples/jutil.py -> build/lib/apples 2021-05-23T06:50:33,277 copying apples/OptionsBasic.py -> build/lib/apples 2021-05-23T06:50:33,283 copying apples/OLS.py -> build/lib/apples 2021-05-23T06:50:33,289 copying apples/__init__.py -> build/lib/apples 2021-05-23T06:50:33,294 copying apples/PoolRepresentativeWorker.py -> build/lib/apples 2021-05-23T06:50:33,300 copying apples/PoolQueryWorker.py -> build/lib/apples 2021-05-23T06:50:33,307 creating build/lib/apples/tools 2021-05-23T06:50:33,309 copying apples/tools/__init__.py -> build/lib/apples/tools 2021-05-23T06:50:33,312 running egg_info 2021-05-23T06:50:33,340 writing requirements to apples.egg-info/requires.txt 2021-05-23T06:50:33,343 writing top-level names to apples.egg-info/top_level.txt 2021-05-23T06:50:33,346 writing apples.egg-info/PKG-INFO 2021-05-23T06:50:33,351 writing dependency_links to apples.egg-info/dependency_links.txt 2021-05-23T06:50:33,364 reading manifest file 'apples.egg-info/SOURCES.txt' 2021-05-23T06:50:33,370 reading manifest template 'MANIFEST.in' 2021-05-23T06:50:33,385 writing manifest file 'apples.egg-info/SOURCES.txt' 2021-05-23T06:50:33,390 copying apples/tools/FastTree-darwin -> build/lib/apples/tools 2021-05-23T06:50:33,479 copying apples/tools/FastTree-linux -> build/lib/apples/tools 2021-05-23T06:50:33,522 copying apples/tools/FastTree.exe -> build/lib/apples/tools 2021-05-23T06:50:33,565 running build_scripts 2021-05-23T06:50:33,567 creating build/scripts-3.5 2021-05-23T06:50:33,570 copying and adjusting run_apples.py -> build/scripts-3.5 2021-05-23T06:50:33,575 copying and adjusting build_applesdtb.py -> build/scripts-3.5 2021-05-23T06:50:33,577 changing mode of build/scripts-3.5/run_apples.py from 644 to 755 2021-05-23T06:50:33,578 changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755 2021-05-23T06:50:33,586 installing to build/bdist.linux-armv7l/wheel 2021-05-23T06:50:33,587 running install 2021-05-23T06:50:33,589 running install_lib 2021-05-23T06:50:33,597 creating build/bdist.linux-armv7l 2021-05-23T06:50:33,598 creating build/bdist.linux-armv7l/wheel 2021-05-23T06:50:33,602 creating build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,604 copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,609 copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,614 copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,618 copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,623 copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,627 copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,631 copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,637 copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,644 copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,649 copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,655 copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,661 copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,667 copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,673 copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,678 copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,683 copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,687 copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,692 copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,696 copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,702 copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples 2021-05-23T06:50:33,709 creating build/bdist.linux-armv7l/wheel/apples/tools 2021-05-23T06:50:33,712 copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools 2021-05-23T06:50:33,755 copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools 2021-05-23T06:50:33,849 copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools 2021-05-23T06:50:33,855 copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools 2021-05-23T06:50:33,889 running install_egg_info 2021-05-23T06:50:33,914 Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.2-py3.5.egg-info 2021-05-23T06:50:33,945 running install_scripts 2021-05-23T06:50:34,088 creating build/bdist.linux-armv7l/wheel/apples-2.0.2.data 2021-05-23T06:50:34,089 creating build/bdist.linux-armv7l/wheel/apples-2.0.2.data/scripts 2021-05-23T06:50:34,092 copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.2.data/scripts 2021-05-23T06:50:34,097 copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.2.data/scripts 2021-05-23T06:50:34,100 changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.2.data/scripts/run_apples.py to 755 2021-05-23T06:50:34,101 changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.2.data/scripts/build_applesdtb.py to 755 2021-05-23T06:50:34,163 creating build/bdist.linux-armv7l/wheel/apples-2.0.2.dist-info/WHEEL 2021-05-23T06:50:35,017 Building wheel for apples (setup.py): finished with status 'done' 2021-05-23T06:50:35,033 Created wheel for apples: filename=apples-2.0.2-py3-none-any.whl size=765327 sha256=7b2a3b37bf6ba42ec3506ba65bbbf1961ea2a2540100d9bfed4f901a6edd1cf7 2021-05-23T06:50:35,034 Stored in directory: /tmp/pip-ephem-wheel-cache-ftw0jbg_/wheels/35/56/08/54bb4ed015b655cf32dd7436777fa1e21f1e0b5d8ab9ed548c 2021-05-23T06:50:35,054 Successfully built apples 2021-05-23T06:50:35,193 Removed build tracker: '/tmp/pip-req-tracker-xwi3i5y0'