2021-05-28T07:27:32,174 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-05-28T07:27:32,850 Created temporary directory: /tmp/pip-ephem-wheel-cache-6ubtpc4m 2021-05-28T07:27:32,855 Created temporary directory: /tmp/pip-req-tracker-t047oppq 2021-05-28T07:27:32,856 Initialized build tracking at /tmp/pip-req-tracker-t047oppq 2021-05-28T07:27:32,856 Created build tracker: /tmp/pip-req-tracker-t047oppq 2021-05-28T07:27:32,856 Entered build tracker: /tmp/pip-req-tracker-t047oppq 2021-05-28T07:27:32,858 Created temporary directory: /tmp/pip-wheel-0j5es3_x 2021-05-28T07:27:32,930 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com 2021-05-28T07:27:32,934 2 location(s) to search for versions of cnvkit: 2021-05-28T07:27:32,934 * https://pypi.org/simple/cnvkit/ 2021-05-28T07:27:32,934 * https://pypi.ngc.nvidia.com/cnvkit/ 2021-05-28T07:27:32,935 Fetching project page and analyzing links: https://pypi.org/simple/cnvkit/ 2021-05-28T07:27:32,937 Getting page https://pypi.org/simple/cnvkit/ 2021-05-28T07:27:32,941 Found index url https://pypi.org/simple 2021-05-28T07:27:33,335 Found link https://files.pythonhosted.org/packages/32/77/621ff6d47c503ccded6fa853e0cd472afed8e7977b0b34ed39172d5bc345/CNVkit-0.2.tar.gz#sha256=cc64082759a0d45f2475c00932ff34394c3881b3878dea7c3351c4843b351439 (from https://pypi.org/simple/cnvkit/), version: 0.2 2021-05-28T07:27:33,336 Found link https://files.pythonhosted.org/packages/71/ff/dbcf0245a0bf19f6ba8d2eaa116e49b5722cb5baec0d67d1102efc464c7d/CNVkit-0.2.1.tar.gz#sha256=e39f32de109c811b49e98aa0a56d16c600b2a4a570cd4dbb85ba8c51c99a0176 (from https://pypi.org/simple/cnvkit/), version: 0.2.1 2021-05-28T07:27:33,337 Found link https://files.pythonhosted.org/packages/0a/b6/4b3691109140a2c4b1e5088ea5c5647757c69b61668ecbbac99c1afe4c79/CNVkit-0.2.2.tar.gz#sha256=1a61fef6ae9e227446e624b5ccddaf66a9444260014a44d63573008b8ac858cf (from 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https://files.pythonhosted.org/packages/67/f2/8989d8ed3163f78b3c8d524f97c9ce3b2d670f76ed17a8473347584d5d65/CNVkit-0.9.7.tar.gz#sha256=d68adc0121e17c61a3aa28c0a9ba6526510a5a0df0f0a6eb1818bab71b7e927a (from https://pypi.org/simple/cnvkit/), version: 0.9.7 2021-05-28T07:27:33,378 Found link https://files.pythonhosted.org/packages/3e/86/13f74ee3d3daccc6dc29420a5ed55dec1263991998ebd43e20c3e3b2a397/CNVkit-0.9.8.tar.gz#sha256=467e638de3302d1db1ae87c4498b40cceb26fab2cb5d7711f2a7d3e32de8bf20 (from https://pypi.org/simple/cnvkit/), version: 0.9.8 2021-05-28T07:27:33,379 Found link https://files.pythonhosted.org/packages/93/d9/ee1f7b814a8a019225f97dfcc3352a3667f60b653cf9671dd7618807bfbe/CNVkit-0.9.9.tar.gz#sha256=2b6c3aa6e735b4a283445549ef51c533da342a56b140c642e90255917abd08c7 (from https://pypi.org/simple/cnvkit/), version: 0.9.9 2021-05-28T07:27:33,380 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/cnvkit/ 2021-05-28T07:27:33,381 Getting page https://pypi.ngc.nvidia.com/cnvkit/ 2021-05-28T07:27:33,384 Found index url https://pypi.ngc.nvidia.com 2021-05-28T07:27:34,421 Could not fetch URL https://pypi.ngc.nvidia.com/cnvkit/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/cnvkit/ - skipping 2021-05-28T07:27:34,479 Given no hashes to check 1 links for project 'cnvkit': discarding no candidates 2021-05-28T07:27:34,512 Collecting cnvkit==0.9.9 2021-05-28T07:27:34,516 Created temporary directory: /tmp/pip-unpack-pgevdumr 2021-05-28T07:27:34,792 Downloading CNVkit-0.9.9.tar.gz (170 kB) 2021-05-28T07:27:35,392 Added cnvkit==0.9.9 from https://files.pythonhosted.org/packages/93/d9/ee1f7b814a8a019225f97dfcc3352a3667f60b653cf9671dd7618807bfbe/CNVkit-0.9.9.tar.gz#sha256=2b6c3aa6e735b4a283445549ef51c533da342a56b140c642e90255917abd08c7 to build tracker '/tmp/pip-req-tracker-t047oppq' 2021-05-28T07:27:35,396 Running setup.py (path:/tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/setup.py) egg_info for package cnvkit 2021-05-28T07:27:35,398 Created temporary directory: /tmp/pip-pip-egg-info-n93e0_wc 2021-05-28T07:27:35,399 Running command python setup.py egg_info 2021-05-28T07:27:37,681 running egg_info 2021-05-28T07:27:37,686 creating /tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info 2021-05-28T07:27:37,689 writing requirements to /tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info/requires.txt 2021-05-28T07:27:37,692 writing dependency_links to /tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info/dependency_links.txt 2021-05-28T07:27:37,695 writing top-level names to /tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info/top_level.txt 2021-05-28T07:27:37,697 writing /tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info/PKG-INFO 2021-05-28T07:27:37,704 writing manifest file '/tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info/SOURCES.txt' 2021-05-28T07:27:38,093 reading manifest file '/tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info/SOURCES.txt' 2021-05-28T07:27:38,107 writing manifest file '/tmp/pip-pip-egg-info-n93e0_wc/CNVkit.egg-info/SOURCES.txt' 2021-05-28T07:27:38,269 Source in /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950 has version 0.9.9, which satisfies requirement cnvkit==0.9.9 from https://files.pythonhosted.org/packages/93/d9/ee1f7b814a8a019225f97dfcc3352a3667f60b653cf9671dd7618807bfbe/CNVkit-0.9.9.tar.gz#sha256=2b6c3aa6e735b4a283445549ef51c533da342a56b140c642e90255917abd08c7 2021-05-28T07:27:38,270 Removed cnvkit==0.9.9 from https://files.pythonhosted.org/packages/93/d9/ee1f7b814a8a019225f97dfcc3352a3667f60b653cf9671dd7618807bfbe/CNVkit-0.9.9.tar.gz#sha256=2b6c3aa6e735b4a283445549ef51c533da342a56b140c642e90255917abd08c7 from build tracker '/tmp/pip-req-tracker-t047oppq' 2021-05-28T07:27:38,279 Created temporary directory: /tmp/pip-unpack-x085u5_v 2021-05-28T07:27:38,280 Building wheels for collected packages: cnvkit 2021-05-28T07:27:38,290 Created temporary directory: /tmp/pip-wheel-_n52ne0m 2021-05-28T07:27:38,291 Building wheel for cnvkit (setup.py): started 2021-05-28T07:27:38,291 Destination directory: /tmp/pip-wheel-_n52ne0m 2021-05-28T07:27:38,292 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_n52ne0m 2021-05-28T07:27:40,542 running bdist_wheel 2021-05-28T07:27:40,558 running build 2021-05-28T07:27:40,559 running build_py 2021-05-28T07:27:40,895 creating build 2021-05-28T07:27:40,895 creating build/lib 2021-05-28T07:27:40,897 creating build/lib/cnvlib 2021-05-28T07:27:40,900 copying cnvlib/bintest.py -> build/lib/cnvlib 2021-05-28T07:27:40,905 copying cnvlib/segfilters.py -> build/lib/cnvlib 2021-05-28T07:27:40,910 copying cnvlib/heatmap.py -> build/lib/cnvlib 2021-05-28T07:27:40,915 copying cnvlib/import_rna.py -> build/lib/cnvlib 2021-05-28T07:27:40,922 copying cnvlib/access.py -> build/lib/cnvlib 2021-05-28T07:27:40,928 copying cnvlib/smoothing.py -> build/lib/cnvlib 2021-05-28T07:27:40,935 copying cnvlib/autobin.py -> build/lib/cnvlib 2021-05-28T07:27:40,941 copying cnvlib/fix.py -> build/lib/cnvlib 2021-05-28T07:27:40,949 copying cnvlib/coverage.py -> build/lib/cnvlib 2021-05-28T07:27:40,955 copying cnvlib/metrics.py -> build/lib/cnvlib 2021-05-28T07:27:40,961 copying cnvlib/importers.py -> build/lib/cnvlib 2021-05-28T07:27:40,967 copying cnvlib/cmdutil.py -> build/lib/cnvlib 2021-05-28T07:27:40,973 copying cnvlib/target.py -> build/lib/cnvlib 2021-05-28T07:27:40,978 copying cnvlib/scatter.py -> build/lib/cnvlib 2021-05-28T07:27:40,987 copying cnvlib/parallel.py -> build/lib/cnvlib 2021-05-28T07:27:40,992 copying cnvlib/segmetrics.py -> build/lib/cnvlib 2021-05-28T07:27:40,999 copying cnvlib/call.py -> build/lib/cnvlib 2021-05-28T07:27:41,006 copying cnvlib/params.py -> build/lib/cnvlib 2021-05-28T07:27:41,011 copying cnvlib/antitarget.py -> build/lib/cnvlib 2021-05-28T07:27:41,017 copying cnvlib/reports.py -> build/lib/cnvlib 2021-05-28T07:27:41,024 copying cnvlib/reference.py -> build/lib/cnvlib 2021-05-28T07:27:41,032 copying cnvlib/diagram.py -> build/lib/cnvlib 2021-05-28T07:27:41,039 copying cnvlib/_version.py -> build/lib/cnvlib 2021-05-28T07:27:41,044 copying cnvlib/core.py -> build/lib/cnvlib 2021-05-28T07:27:41,051 copying cnvlib/plots.py -> build/lib/cnvlib 2021-05-28T07:27:41,058 copying cnvlib/cnary.py -> build/lib/cnvlib 2021-05-28T07:27:41,066 copying cnvlib/export.py -> build/lib/cnvlib 2021-05-28T07:27:41,074 copying cnvlib/commands.py -> build/lib/cnvlib 2021-05-28T07:27:41,090 copying cnvlib/batch.py -> build/lib/cnvlib 2021-05-28T07:27:41,097 copying cnvlib/descriptives.py -> build/lib/cnvlib 2021-05-28T07:27:41,105 copying cnvlib/__init__.py -> build/lib/cnvlib 2021-05-28T07:27:42,275 copying cnvlib/cluster.py -> build/lib/cnvlib 2021-05-28T07:27:42,282 copying cnvlib/samutil.py -> build/lib/cnvlib 2021-05-28T07:27:42,289 copying cnvlib/vary.py -> build/lib/cnvlib 2021-05-28T07:27:42,295 copying cnvlib/rna.py -> build/lib/cnvlib 2021-05-28T07:27:42,306 creating build/lib/cnvlib/segmentation 2021-05-28T07:27:42,309 copying cnvlib/segmentation/haar.py -> build/lib/cnvlib/segmentation 2021-05-28T07:27:42,317 copying cnvlib/segmentation/cbs.py -> build/lib/cnvlib/segmentation 2021-05-28T07:27:42,321 copying cnvlib/segmentation/hmm.py -> build/lib/cnvlib/segmentation 2021-05-28T07:27:42,326 copying cnvlib/segmentation/__init__.py -> build/lib/cnvlib/segmentation 2021-05-28T07:27:42,331 copying cnvlib/segmentation/none.py -> build/lib/cnvlib/segmentation 2021-05-28T07:27:42,336 copying cnvlib/segmentation/flasso.py -> build/lib/cnvlib/segmentation 2021-05-28T07:27:42,345 creating build/lib/skgenome 2021-05-28T07:27:42,348 copying skgenome/chromsort.py -> build/lib/skgenome 2021-05-28T07:27:42,353 copying skgenome/combiners.py -> build/lib/skgenome 2021-05-28T07:27:42,358 copying skgenome/intersect.py -> build/lib/skgenome 2021-05-28T07:27:42,363 copying skgenome/rangelabel.py -> build/lib/skgenome 2021-05-28T07:27:42,367 copying skgenome/subtract.py -> build/lib/skgenome 2021-05-28T07:27:42,371 copying skgenome/merge.py -> build/lib/skgenome 2021-05-28T07:27:42,376 copying skgenome/__init__.py -> build/lib/skgenome 2021-05-28T07:27:42,381 copying skgenome/subdivide.py -> build/lib/skgenome 2021-05-28T07:27:42,386 copying skgenome/gary.py -> build/lib/skgenome 2021-05-28T07:27:42,398 creating build/lib/skgenome/tabio 2021-05-28T07:27:42,400 copying skgenome/tabio/vcfsimple.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,405 copying skgenome/tabio/textcoord.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,408 copying skgenome/tabio/bedio.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,413 copying skgenome/tabio/util.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,417 copying skgenome/tabio/seg.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,423 copying skgenome/tabio/picard.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,429 copying skgenome/tabio/vcfio.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,436 copying skgenome/tabio/tab.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,441 copying skgenome/tabio/__init__.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,446 copying skgenome/tabio/seqdict.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,450 copying skgenome/tabio/genepred.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,455 copying skgenome/tabio/gff.py -> build/lib/skgenome/tabio 2021-05-28T07:27:42,480 running build_scripts 2021-05-28T07:27:42,481 creating build/scripts-3.5 2021-05-28T07:27:42,485 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/cnvkit.py -> build/scripts-3.5 2021-05-28T07:27:42,489 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/scripts/cnv_expression_correlate.py -> build/scripts-3.5 2021-05-28T07:27:42,494 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/scripts/genome_instability_index.py -> build/scripts-3.5 2021-05-28T07:27:42,498 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/scripts/reference2targets.py -> build/scripts-3.5 2021-05-28T07:27:42,502 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/scripts/skg_convert.py -> build/scripts-3.5 2021-05-28T07:27:42,507 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/scripts/cnv_updater.py -> build/scripts-3.5 2021-05-28T07:27:42,513 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/scripts/guess_baits.py -> build/scripts-3.5 2021-05-28T07:27:42,520 copying and adjusting /tmp/pip-wheel-0j5es3_x/cnvkit_c6aa840ce4324701b587c2bd29926950/scripts/cnv_annotate.py -> build/scripts-3.5 2021-05-28T07:27:42,523 changing mode of build/scripts-3.5/cnvkit.py from 644 to 755 2021-05-28T07:27:42,524 changing mode of build/scripts-3.5/cnv_expression_correlate.py from 644 to 755 2021-05-28T07:27:42,526 changing mode of build/scripts-3.5/genome_instability_index.py from 644 to 755 2021-05-28T07:27:42,527 changing mode of build/scripts-3.5/reference2targets.py from 644 to 755 2021-05-28T07:27:42,528 changing mode of build/scripts-3.5/skg_convert.py from 644 to 755 2021-05-28T07:27:42,529 changing mode of build/scripts-3.5/cnv_updater.py from 644 to 755 2021-05-28T07:27:42,531 changing mode of build/scripts-3.5/guess_baits.py from 644 to 755 2021-05-28T07:27:42,532 changing mode of build/scripts-3.5/cnv_annotate.py from 644 to 755 2021-05-28T07:27:42,541 installing to build/bdist.linux-armv7l/wheel 2021-05-28T07:27:42,542 running install 2021-05-28T07:27:42,544 running install_lib 2021-05-28T07:27:42,552 creating build/bdist.linux-armv7l 2021-05-28T07:27:42,553 creating build/bdist.linux-armv7l/wheel 2021-05-28T07:27:42,558 creating build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,561 copying build/lib/cnvlib/bintest.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,566 copying build/lib/cnvlib/segfilters.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,571 copying build/lib/cnvlib/heatmap.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,577 copying build/lib/cnvlib/import_rna.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,584 creating build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2021-05-28T07:27:42,587 copying build/lib/cnvlib/segmentation/haar.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2021-05-28T07:27:42,595 copying build/lib/cnvlib/segmentation/cbs.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2021-05-28T07:27:42,601 copying build/lib/cnvlib/segmentation/hmm.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2021-05-28T07:27:42,608 copying build/lib/cnvlib/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2021-05-28T07:27:42,615 copying build/lib/cnvlib/segmentation/none.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2021-05-28T07:27:42,621 copying build/lib/cnvlib/segmentation/flasso.py -> build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2021-05-28T07:27:42,627 copying build/lib/cnvlib/access.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,633 copying build/lib/cnvlib/smoothing.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,641 copying build/lib/cnvlib/autobin.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,648 copying build/lib/cnvlib/fix.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,656 copying build/lib/cnvlib/coverage.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,663 copying build/lib/cnvlib/metrics.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,669 copying build/lib/cnvlib/importers.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,675 copying build/lib/cnvlib/cmdutil.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,681 copying build/lib/cnvlib/target.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,687 copying build/lib/cnvlib/scatter.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,696 copying build/lib/cnvlib/parallel.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,701 copying build/lib/cnvlib/segmetrics.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,708 copying build/lib/cnvlib/call.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,715 copying build/lib/cnvlib/params.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,721 copying build/lib/cnvlib/antitarget.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,727 copying build/lib/cnvlib/reports.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,734 copying build/lib/cnvlib/reference.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,742 copying build/lib/cnvlib/diagram.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,749 copying build/lib/cnvlib/_version.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,754 copying build/lib/cnvlib/core.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,761 copying build/lib/cnvlib/plots.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,768 copying build/lib/cnvlib/cnary.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,776 copying build/lib/cnvlib/export.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,785 copying build/lib/cnvlib/commands.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,800 copying build/lib/cnvlib/batch.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,807 copying build/lib/cnvlib/descriptives.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,814 copying build/lib/cnvlib/__init__.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,819 copying build/lib/cnvlib/cluster.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,826 copying build/lib/cnvlib/samutil.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,831 copying build/lib/cnvlib/vary.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,836 copying build/lib/cnvlib/rna.py -> build/bdist.linux-armv7l/wheel/cnvlib 2021-05-28T07:27:42,843 creating build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,845 copying build/lib/skgenome/chromsort.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,851 copying build/lib/skgenome/combiners.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,856 copying build/lib/skgenome/intersect.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,863 copying build/lib/skgenome/rangelabel.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,871 creating build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,873 copying build/lib/skgenome/tabio/vcfsimple.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,879 copying build/lib/skgenome/tabio/textcoord.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,884 copying build/lib/skgenome/tabio/bedio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,890 copying build/lib/skgenome/tabio/util.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,896 copying build/lib/skgenome/tabio/seg.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,903 copying build/lib/skgenome/tabio/picard.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,908 copying build/lib/skgenome/tabio/vcfio.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,915 copying build/lib/skgenome/tabio/tab.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,921 copying build/lib/skgenome/tabio/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,928 copying build/lib/skgenome/tabio/seqdict.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,934 copying build/lib/skgenome/tabio/genepred.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,941 copying build/lib/skgenome/tabio/gff.py -> build/bdist.linux-armv7l/wheel/skgenome/tabio 2021-05-28T07:27:42,947 copying build/lib/skgenome/subtract.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,953 copying build/lib/skgenome/merge.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,960 copying build/lib/skgenome/__init__.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,966 copying build/lib/skgenome/subdivide.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,971 copying build/lib/skgenome/gary.py -> build/bdist.linux-armv7l/wheel/skgenome 2021-05-28T07:27:42,980 running install_egg_info 2021-05-28T07:27:43,027 running egg_info 2021-05-28T07:27:43,029 writing dependency_links to CNVkit.egg-info/dependency_links.txt 2021-05-28T07:27:43,032 writing CNVkit.egg-info/PKG-INFO 2021-05-28T07:27:43,036 writing top-level names to CNVkit.egg-info/top_level.txt 2021-05-28T07:27:43,039 writing requirements to CNVkit.egg-info/requires.txt 2021-05-28T07:27:43,073 reading manifest file 'CNVkit.egg-info/SOURCES.txt' 2021-05-28T07:27:43,126 writing manifest file 'CNVkit.egg-info/SOURCES.txt' 2021-05-28T07:27:43,129 Copying CNVkit.egg-info to build/bdist.linux-armv7l/wheel/CNVkit-0.9.9-py3.5.egg-info 2021-05-28T07:27:43,156 running install_scripts 2021-05-28T07:27:43,299 creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data 2021-05-28T07:27:43,300 creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,303 copying build/scripts-3.5/cnv_expression_correlate.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,308 copying build/scripts-3.5/genome_instability_index.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,313 copying build/scripts-3.5/reference2targets.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,317 copying build/scripts-3.5/skg_convert.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,322 copying build/scripts-3.5/cnv_updater.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,328 copying build/scripts-3.5/guess_baits.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,335 copying build/scripts-3.5/cnv_annotate.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,341 copying build/scripts-3.5/cnvkit.py -> build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts 2021-05-28T07:27:43,346 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/cnv_expression_correlate.py to 755 2021-05-28T07:27:43,347 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/genome_instability_index.py to 755 2021-05-28T07:27:43,349 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/reference2targets.py to 755 2021-05-28T07:27:43,350 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/skg_convert.py to 755 2021-05-28T07:27:43,351 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/cnv_updater.py to 755 2021-05-28T07:27:43,353 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/guess_baits.py to 755 2021-05-28T07:27:43,354 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/cnv_annotate.py to 755 2021-05-28T07:27:43,355 changing mode of build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.data/scripts/cnvkit.py to 755 2021-05-28T07:27:43,464 creating build/bdist.linux-armv7l/wheel/CNVkit-0.9.9.dist-info/WHEEL 2021-05-28T07:27:44,066 Building wheel for cnvkit (setup.py): finished with status 'done' 2021-05-28T07:27:44,073 Created wheel for cnvkit: filename=CNVkit-0.9.9-py2.py3-none-any.whl size=187463 sha256=264472f08e6f9272c5b57cb9b0065fcb9eb858f60f7dbd9ec374c5ef1a28b686 2021-05-28T07:27:44,074 Stored in directory: /tmp/pip-ephem-wheel-cache-6ubtpc4m/wheels/9e/b1/70/5d0926670c00d56eeda9ec467bca34c3cdced7e5f6712b4494 2021-05-28T07:27:44,098 Successfully built cnvkit 2021-05-28T07:27:44,136 Removed build tracker: '/tmp/pip-req-tracker-t047oppq'