2021-05-28T14:21:17,682 Created temporary directory: /tmp/pip-ephem-wheel-cache-r64op_yk 2021-05-28T14:21:17,685 Created temporary directory: /tmp/pip-req-tracker-dpyyx90o 2021-05-28T14:21:17,686 Initialized build tracking at /tmp/pip-req-tracker-dpyyx90o 2021-05-28T14:21:17,686 Created build tracker: /tmp/pip-req-tracker-dpyyx90o 2021-05-28T14:21:17,686 Entered build tracker: /tmp/pip-req-tracker-dpyyx90o 2021-05-28T14:21:17,687 Created temporary directory: /tmp/pip-wheel-vnmzimdz 2021-05-28T14:21:17,721 1 location(s) to search for versions of ngs-tools: 2021-05-28T14:21:17,721 * https://pypi.org/simple/ngs-tools/ 2021-05-28T14:21:17,722 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2021-05-28T14:21:17,722 Getting page https://pypi.org/simple/ngs-tools/ 2021-05-28T14:21:17,724 Found index url https://pypi.org/simple 2021-05-28T14:21:17,814 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2021-05-28T14:21:17,815 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2021-05-28T14:21:17,815 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2021-05-28T14:21:17,816 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2021-05-28T14:21:17,829 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2021-05-28T14:21:17,844 Collecting ngs-tools==1.2.1 2021-05-28T14:21:17,846 Created temporary directory: /tmp/pip-unpack-t045g10g 2021-05-28T14:21:22,386 Downloading ngs-tools-1.2.1.tar.gz (20.4 MB) 2021-05-28T14:21:25,105 Added ngs-tools==1.2.1 from https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f to build tracker '/tmp/pip-req-tracker-dpyyx90o' 2021-05-28T14:21:25,106 Running setup.py (path:/tmp/pip-wheel-vnmzimdz/ngs-tools_3769de573742431289a4e8ac1cc889c0/setup.py) egg_info for package ngs-tools 2021-05-28T14:21:25,107 Created temporary directory: /tmp/pip-pip-egg-info-lk1evun5 2021-05-28T14:21:25,107 Running command python setup.py egg_info 2021-05-28T14:21:26,257 running egg_info 2021-05-28T14:21:26,259 creating /tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info 2021-05-28T14:21:26,260 writing /tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info/PKG-INFO 2021-05-28T14:21:26,263 writing dependency_links to /tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info/dependency_links.txt 2021-05-28T14:21:26,266 writing requirements to /tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info/requires.txt 2021-05-28T14:21:26,267 writing top-level names to /tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info/top_level.txt 2021-05-28T14:21:26,269 writing manifest file '/tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info/SOURCES.txt' 2021-05-28T14:21:26,416 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-28T14:21:26,419 reading manifest file '/tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info/SOURCES.txt' 2021-05-28T14:21:26,421 reading manifest template 'MANIFEST.in' 2021-05-28T14:21:26,427 writing manifest file '/tmp/pip-pip-egg-info-lk1evun5/ngs_tools.egg-info/SOURCES.txt' 2021-05-28T14:21:26,489 Source in /tmp/pip-wheel-vnmzimdz/ngs-tools_3769de573742431289a4e8ac1cc889c0 has version 1.2.1, which satisfies requirement ngs-tools==1.2.1 from https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f 2021-05-28T14:21:26,490 Removed ngs-tools==1.2.1 from https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f from build tracker '/tmp/pip-req-tracker-dpyyx90o' 2021-05-28T14:21:26,497 Created temporary directory: /tmp/pip-unpack-o116h_69 2021-05-28T14:21:26,497 Building wheels for collected packages: ngs-tools 2021-05-28T14:21:26,502 Created temporary directory: /tmp/pip-wheel-s4c3mouy 2021-05-28T14:21:26,503 Building wheel for ngs-tools (setup.py): started 2021-05-28T14:21:26,503 Destination directory: /tmp/pip-wheel-s4c3mouy 2021-05-28T14:21:26,504 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vnmzimdz/ngs-tools_3769de573742431289a4e8ac1cc889c0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vnmzimdz/ngs-tools_3769de573742431289a4e8ac1cc889c0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-s4c3mouy 2021-05-28T14:21:27,604 running bdist_wheel 2021-05-28T14:21:27,610 running build 2021-05-28T14:21:27,610 running build_py 2021-05-28T14:21:27,743 creating build 2021-05-28T14:21:27,743 creating build/lib 2021-05-28T14:21:27,744 creating build/lib/ngs_tools 2021-05-28T14:21:27,745 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2021-05-28T14:21:27,748 copying ngs_tools/chemistry.py -> build/lib/ngs_tools 2021-05-28T14:21:27,751 copying ngs_tools/utils.py -> build/lib/ngs_tools 2021-05-28T14:21:27,753 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2021-05-28T14:21:27,756 copying ngs_tools/bam.py -> build/lib/ngs_tools 2021-05-28T14:21:27,759 copying ngs_tools/gtf.py -> build/lib/ngs_tools 2021-05-28T14:21:27,763 copying ngs_tools/fastq.py -> build/lib/ngs_tools 2021-05-28T14:21:27,766 copying ngs_tools/logging.py -> build/lib/ngs_tools 2021-05-28T14:21:27,768 copying ngs_tools/fasta.py -> build/lib/ngs_tools 2021-05-28T14:21:27,771 running egg_info 2021-05-28T14:21:27,789 writing ngs_tools.egg-info/PKG-INFO 2021-05-28T14:21:27,792 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2021-05-28T14:21:27,794 writing requirements to ngs_tools.egg-info/requires.txt 2021-05-28T14:21:27,796 writing top-level names to ngs_tools.egg-info/top_level.txt 2021-05-28T14:21:27,803 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-28T14:21:27,806 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-28T14:21:27,810 reading manifest template 'MANIFEST.in' 2021-05-28T14:21:27,819 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-28T14:21:27,823 creating build/lib/ngs_tools/whitelists 2021-05-28T14:21:27,824 copying ngs_tools/whitelists/10x_version1.txt.gz -> build/lib/ngs_tools/whitelists 2021-05-28T14:21:27,869 copying ngs_tools/whitelists/10x_version2.txt.gz -> build/lib/ngs_tools/whitelists 2021-05-28T14:21:27,920 copying ngs_tools/whitelists/10x_version3.txt.gz -> build/lib/ngs_tools/whitelists 2021-05-28T14:21:28,301 copying ngs_tools/whitelists/indrops_version3.txt.gz -> build/lib/ngs_tools/whitelists 2021-05-28T14:21:28,314 copying ngs_tools/whitelists/sci_fate.txt.gz -> build/lib/ngs_tools/whitelists 2021-05-28T14:21:28,321 installing to build/bdist.linux-armv7l/wheel 2021-05-28T14:21:28,321 running install 2021-05-28T14:21:28,322 running install_lib 2021-05-28T14:21:28,327 creating build/bdist.linux-armv7l 2021-05-28T14:21:28,327 creating build/bdist.linux-armv7l/wheel 2021-05-28T14:21:28,330 creating build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,331 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,334 copying build/lib/ngs_tools/chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,337 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,340 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,344 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,347 copying build/lib/ngs_tools/gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,352 creating build/bdist.linux-armv7l/wheel/ngs_tools/whitelists 2021-05-28T14:21:28,353 copying build/lib/ngs_tools/whitelists/indrops_version3.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/whitelists 2021-05-28T14:21:28,367 copying build/lib/ngs_tools/whitelists/10x_version3.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/whitelists 2021-05-28T14:21:28,682 copying build/lib/ngs_tools/whitelists/10x_version2.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/whitelists 2021-05-28T14:21:28,737 copying build/lib/ngs_tools/whitelists/10x_version1.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/whitelists 2021-05-28T14:21:28,788 copying build/lib/ngs_tools/whitelists/sci_fate.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/whitelists 2021-05-28T14:21:28,791 copying build/lib/ngs_tools/fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,794 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,797 copying build/lib/ngs_tools/fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-28T14:21:28,800 running install_egg_info 2021-05-28T14:21:28,810 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.2.1-py3.7.egg-info 2021-05-28T14:21:28,828 running install_scripts 2021-05-28T14:21:28,917 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-05-28T14:21:28,924 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.2.1.dist-info/WHEEL 2021-05-28T14:21:28,927 creating '/tmp/pip-wheel-s4c3mouy/ngs_tools-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-05-28T14:21:28,931 adding 'ngs_tools/__init__.py' 2021-05-28T14:21:28,934 adding 'ngs_tools/bam.py' 2021-05-28T14:21:28,937 adding 'ngs_tools/chemistry.py' 2021-05-28T14:21:28,940 adding 'ngs_tools/fasta.py' 2021-05-28T14:21:28,943 adding 'ngs_tools/fastq.py' 2021-05-28T14:21:28,947 adding 'ngs_tools/gtf.py' 2021-05-28T14:21:28,949 adding 'ngs_tools/logging.py' 2021-05-28T14:21:28,953 adding 'ngs_tools/sequence.py' 2021-05-28T14:21:28,956 adding 'ngs_tools/utils.py' 2021-05-28T14:21:29,211 adding 'ngs_tools/whitelists/10x_version1.txt.gz' 2021-05-28T14:21:29,487 adding 'ngs_tools/whitelists/10x_version2.txt.gz' 2021-05-28T14:21:31,676 adding 'ngs_tools/whitelists/10x_version3.txt.gz' 2021-05-28T14:21:31,856 adding 'ngs_tools/whitelists/indrops_version3.txt.gz' 2021-05-28T14:21:31,861 adding 'ngs_tools/whitelists/sci_fate.txt.gz' 2021-05-28T14:21:31,864 adding 'ngs_tools-1.2.1.dist-info/LICENSE' 2021-05-28T14:21:31,865 adding 'ngs_tools-1.2.1.dist-info/METADATA' 2021-05-28T14:21:31,866 adding 'ngs_tools-1.2.1.dist-info/WHEEL' 2021-05-28T14:21:31,868 adding 'ngs_tools-1.2.1.dist-info/top_level.txt' 2021-05-28T14:21:31,868 adding 'ngs_tools-1.2.1.dist-info/RECORD' 2021-05-28T14:21:32,118 removing build/bdist.linux-armv7l/wheel 2021-05-28T14:21:32,205 Building wheel for ngs-tools (setup.py): finished with status 'done' 2021-05-28T14:21:32,418 Created wheel for ngs-tools: filename=ngs_tools-1.2.1-py3-none-any.whl size=20337236 sha256=45796f1aff4813d9efa48859e8b01f0e85358e3f2fc682ffdd190956b3fcf1f2 2021-05-28T14:21:32,418 Stored in directory: /tmp/pip-ephem-wheel-cache-r64op_yk/wheels/91/f7/ec/5bd6632b022a4ba09fd2a1cdf46c340c3b9b9eef1561c94d7d 2021-05-28T14:21:32,438 Successfully built ngs-tools 2021-05-28T14:21:33,058 Removed build tracker: '/tmp/pip-req-tracker-dpyyx90o'