2021-05-30T22:28:09,759 Created temporary directory: /tmp/pip-ephem-wheel-cache-747s3r70 2021-05-30T22:28:09,763 Created temporary directory: /tmp/pip-req-tracker-9jm06nfo 2021-05-30T22:28:09,763 Initialized build tracking at /tmp/pip-req-tracker-9jm06nfo 2021-05-30T22:28:09,763 Created build tracker: /tmp/pip-req-tracker-9jm06nfo 2021-05-30T22:28:09,763 Entered build tracker: /tmp/pip-req-tracker-9jm06nfo 2021-05-30T22:28:09,764 Created temporary directory: /tmp/pip-wheel-3clke8bi 2021-05-30T22:28:09,799 1 location(s) to search for versions of ngs-tools: 2021-05-30T22:28:09,799 * https://pypi.org/simple/ngs-tools/ 2021-05-30T22:28:09,800 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2021-05-30T22:28:09,801 Getting page https://pypi.org/simple/ngs-tools/ 2021-05-30T22:28:09,802 Found index url https://pypi.org/simple 2021-05-30T22:28:09,894 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2021-05-30T22:28:09,894 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2021-05-30T22:28:09,895 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2021-05-30T22:28:09,896 Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2 2021-05-30T22:28:09,896 Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3 2021-05-30T22:28:09,896 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2021-05-30T22:28:09,911 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2021-05-30T22:28:09,926 Collecting ngs-tools==1.2.2 2021-05-30T22:28:09,928 Created temporary directory: /tmp/pip-unpack-p9w0x8w1 2021-05-30T22:28:13,759 Downloading ngs-tools-1.2.2.tar.gz (51.7 MB) 2021-05-30T22:28:20,369 Added ngs-tools==1.2.2 from https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 to build tracker '/tmp/pip-req-tracker-9jm06nfo' 2021-05-30T22:28:20,370 Running setup.py (path:/tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d/setup.py) egg_info for package ngs-tools 2021-05-30T22:28:20,371 Created temporary directory: /tmp/pip-pip-egg-info-omrrmyi7 2021-05-30T22:28:20,372 Running command python setup.py egg_info 2021-05-30T22:28:21,421 running egg_info 2021-05-30T22:28:21,424 creating /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info 2021-05-30T22:28:21,425 writing /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/PKG-INFO 2021-05-30T22:28:21,428 writing dependency_links to /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/dependency_links.txt 2021-05-30T22:28:21,430 writing requirements to /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/requires.txt 2021-05-30T22:28:21,432 writing top-level names to /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/top_level.txt 2021-05-30T22:28:21,434 writing manifest file '/tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:28:21,580 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-30T22:28:21,583 reading manifest file '/tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:28:21,585 reading manifest template 'MANIFEST.in' 2021-05-30T22:28:21,593 writing manifest file '/tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:28:21,655 Source in /tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d has version 1.2.2, which satisfies requirement ngs-tools==1.2.2 from https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 2021-05-30T22:28:21,656 Removed ngs-tools==1.2.2 from https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 from build tracker '/tmp/pip-req-tracker-9jm06nfo' 2021-05-30T22:28:21,662 Created temporary directory: /tmp/pip-unpack-gcdk1vw0 2021-05-30T22:28:21,662 Building wheels for collected packages: ngs-tools 2021-05-30T22:28:21,667 Created temporary directory: /tmp/pip-wheel-n2cnfn86 2021-05-30T22:28:21,668 Building wheel for ngs-tools (setup.py): started 2021-05-30T22:28:21,668 Destination directory: /tmp/pip-wheel-n2cnfn86 2021-05-30T22:28:21,669 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-n2cnfn86 2021-05-30T22:28:22,711 running bdist_wheel 2021-05-30T22:28:22,716 running build 2021-05-30T22:28:22,716 running build_py 2021-05-30T22:28:22,852 creating build 2021-05-30T22:28:22,852 creating build/lib 2021-05-30T22:28:22,853 creating build/lib/ngs_tools 2021-05-30T22:28:22,854 copying ngs_tools/utils.py -> build/lib/ngs_tools 2021-05-30T22:28:22,857 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2021-05-30T22:28:22,859 copying ngs_tools/logging.py -> build/lib/ngs_tools 2021-05-30T22:28:22,861 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2021-05-30T22:28:22,863 copying ngs_tools/bam.py -> build/lib/ngs_tools 2021-05-30T22:28:22,866 creating build/lib/ngs_tools/chemistry 2021-05-30T22:28:22,867 copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:28:22,870 copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:28:22,872 copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:28:22,875 copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:28:22,878 creating build/lib/ngs_tools/fasta 2021-05-30T22:28:22,879 copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta 2021-05-30T22:28:22,882 copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta 2021-05-30T22:28:22,884 copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta 2021-05-30T22:28:22,887 creating build/lib/ngs_tools/fastq 2021-05-30T22:28:22,888 copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq 2021-05-30T22:28:22,891 copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq 2021-05-30T22:28:22,893 copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq 2021-05-30T22:28:22,896 creating build/lib/ngs_tools/gtf 2021-05-30T22:28:22,897 copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf 2021-05-30T22:28:22,900 copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf 2021-05-30T22:28:22,902 copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf 2021-05-30T22:28:22,904 copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf 2021-05-30T22:28:22,907 copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf 2021-05-30T22:28:22,909 running egg_info 2021-05-30T22:28:22,925 writing ngs_tools.egg-info/PKG-INFO 2021-05-30T22:28:22,927 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2021-05-30T22:28:22,930 writing requirements to ngs_tools.egg-info/requires.txt 2021-05-30T22:28:22,931 writing top-level names to ngs_tools.egg-info/top_level.txt 2021-05-30T22:28:22,940 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-30T22:28:22,943 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:28:22,947 reading manifest template 'MANIFEST.in' 2021-05-30T22:28:22,957 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:28:22,962 creating build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:28:22,963 copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:28:23,025 copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:28:23,078 copying ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:28:23,672 copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:28:23,990 copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:28:24,002 copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:28:24,011 installing to build/bdist.linux-armv7l/wheel 2021-05-30T22:28:24,011 running install 2021-05-30T22:28:24,012 running install_lib 2021-05-30T22:28:24,017 creating build/bdist.linux-armv7l 2021-05-30T22:28:24,017 creating build/bdist.linux-armv7l/wheel 2021-05-30T22:28:24,020 creating build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:28:24,022 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:28:24,025 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:28:24,027 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:28:24,031 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:28:24,033 copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:28:24,036 copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:28:24,038 copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:28:24,044 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:28:24,045 copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:28:24,060 copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:28:24,063 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:28:24,424 copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:28:24,468 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:28:25,172 copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:28:25,222 copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:28:25,225 creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:28:25,226 copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:28:25,229 copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:28:25,231 copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:28:25,233 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:28:25,236 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:28:25,239 creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:28:25,241 copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:28:25,243 copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:28:25,246 copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:28:25,250 creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:28:25,251 copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:28:25,254 copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:28:25,257 copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:28:25,260 copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:28:25,263 copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:28:25,265 running install_egg_info 2021-05-30T22:28:25,276 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.2.2-py3.7.egg-info 2021-05-30T22:28:25,293 running install_scripts 2021-05-30T22:28:25,383 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-05-30T22:28:25,389 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.2.2.dist-info/WHEEL 2021-05-30T22:28:25,392 creating '/tmp/pip-wheel-n2cnfn86/ngs_tools-1.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-05-30T22:28:25,395 adding 'ngs_tools/__init__.py' 2021-05-30T22:28:25,397 adding 'ngs_tools/bam.py' 2021-05-30T22:28:25,399 adding 'ngs_tools/logging.py' 2021-05-30T22:28:25,404 adding 'ngs_tools/sequence.py' 2021-05-30T22:28:25,406 adding 'ngs_tools/utils.py' 2021-05-30T22:28:25,410 adding 'ngs_tools/chemistry/Chemistry.py' 2021-05-30T22:28:25,412 adding 'ngs_tools/chemistry/SingleCellChemistry.py' 2021-05-30T22:28:25,414 adding 'ngs_tools/chemistry/SpatialChemistry.py' 2021-05-30T22:28:25,415 adding 'ngs_tools/chemistry/__init__.py' 2021-05-30T22:28:25,673 adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz' 2021-05-30T22:28:25,950 adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz' 2021-05-30T22:28:30,301 adding 'ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz' 2021-05-30T22:28:32,696 adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz' 2021-05-30T22:28:32,876 adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz' 2021-05-30T22:28:32,881 adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz' 2021-05-30T22:28:32,883 adding 'ngs_tools/fasta/Fasta.py' 2021-05-30T22:28:32,884 adding 'ngs_tools/fasta/FastaEntry.py' 2021-05-30T22:28:32,886 adding 'ngs_tools/fasta/__init__.py' 2021-05-30T22:28:32,888 adding 'ngs_tools/fastq/Fastq.py' 2021-05-30T22:28:32,889 adding 'ngs_tools/fastq/Read.py' 2021-05-30T22:28:32,891 adding 'ngs_tools/fastq/__init__.py' 2021-05-30T22:28:32,893 adding 'ngs_tools/gtf/Gtf.py' 2021-05-30T22:28:32,894 adding 'ngs_tools/gtf/GtfEntry.py' 2021-05-30T22:28:32,895 adding 'ngs_tools/gtf/Segment.py' 2021-05-30T22:28:32,897 adding 'ngs_tools/gtf/SegmentCollection.py' 2021-05-30T22:28:32,899 adding 'ngs_tools/gtf/__init__.py' 2021-05-30T22:28:32,901 adding 'ngs_tools-1.2.2.dist-info/LICENSE' 2021-05-30T22:28:32,902 adding 'ngs_tools-1.2.2.dist-info/METADATA' 2021-05-30T22:28:32,904 adding 'ngs_tools-1.2.2.dist-info/WHEEL' 2021-05-30T22:28:32,905 adding 'ngs_tools-1.2.2.dist-info/top_level.txt' 2021-05-30T22:28:32,905 adding 'ngs_tools-1.2.2.dist-info/RECORD' 2021-05-30T22:28:33,619 removing build/bdist.linux-armv7l/wheel 2021-05-30T22:28:33,736 Building wheel for ngs-tools (setup.py): finished with status 'done' 2021-05-30T22:28:34,275 Created wheel for ngs-tools: filename=ngs_tools-1.2.2-py3-none-any.whl size=51700659 sha256=682da6e59007cd48bb3f8c93cb752483e21e6862c377732587e3f19646625c0d 2021-05-30T22:28:34,276 Stored in directory: /tmp/pip-ephem-wheel-cache-747s3r70/wheels/79/2b/6d/1ba9e9f7b7ccf747b6bd0a21aab5707c16b1ad34e06b3d59ef 2021-05-30T22:28:34,312 Successfully built ngs-tools 2021-05-30T22:28:35,824 Removed build tracker: '/tmp/pip-req-tracker-9jm06nfo'