2021-05-30T22:28:09,759 Created temporary directory: /tmp/pip-ephem-wheel-cache-747s3r70
2021-05-30T22:28:09,763 Created temporary directory: /tmp/pip-req-tracker-9jm06nfo
2021-05-30T22:28:09,763 Initialized build tracking at /tmp/pip-req-tracker-9jm06nfo
2021-05-30T22:28:09,763 Created build tracker: /tmp/pip-req-tracker-9jm06nfo
2021-05-30T22:28:09,763 Entered build tracker: /tmp/pip-req-tracker-9jm06nfo
2021-05-30T22:28:09,764 Created temporary directory: /tmp/pip-wheel-3clke8bi
2021-05-30T22:28:09,799 1 location(s) to search for versions of ngs-tools:
2021-05-30T22:28:09,799 * https://pypi.org/simple/ngs-tools/
2021-05-30T22:28:09,800 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/
2021-05-30T22:28:09,801 Getting page https://pypi.org/simple/ngs-tools/
2021-05-30T22:28:09,802 Found index url https://pypi.org/simple
2021-05-30T22:28:09,894   Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2
2021-05-30T22:28:09,894   Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0
2021-05-30T22:28:09,895   Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1
2021-05-30T22:28:09,896   Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2
2021-05-30T22:28:09,896   Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3
2021-05-30T22:28:09,896 Skipping link: not a file: https://pypi.org/simple/ngs-tools/
2021-05-30T22:28:09,911 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates
2021-05-30T22:28:09,926 Collecting ngs-tools==1.2.2
2021-05-30T22:28:09,928   Created temporary directory: /tmp/pip-unpack-p9w0x8w1
2021-05-30T22:28:13,759   Downloading ngs-tools-1.2.2.tar.gz (51.7 MB)
2021-05-30T22:28:20,369   Added ngs-tools==1.2.2 from https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 to build tracker '/tmp/pip-req-tracker-9jm06nfo'
2021-05-30T22:28:20,370     Running setup.py (path:/tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d/setup.py) egg_info for package ngs-tools
2021-05-30T22:28:20,371     Created temporary directory: /tmp/pip-pip-egg-info-omrrmyi7
2021-05-30T22:28:20,372     Running command python setup.py egg_info
2021-05-30T22:28:21,421     running egg_info
2021-05-30T22:28:21,424     creating /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info
2021-05-30T22:28:21,425     writing /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/PKG-INFO
2021-05-30T22:28:21,428     writing dependency_links to /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/dependency_links.txt
2021-05-30T22:28:21,430     writing requirements to /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/requires.txt
2021-05-30T22:28:21,432     writing top-level names to /tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/top_level.txt
2021-05-30T22:28:21,434     writing manifest file '/tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:28:21,580     adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-05-30T22:28:21,583     reading manifest file '/tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:28:21,585     reading manifest template 'MANIFEST.in'
2021-05-30T22:28:21,593     writing manifest file '/tmp/pip-pip-egg-info-omrrmyi7/ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:28:21,655   Source in /tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d has version 1.2.2, which satisfies requirement ngs-tools==1.2.2 from https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733
2021-05-30T22:28:21,656   Removed ngs-tools==1.2.2 from https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 from build tracker '/tmp/pip-req-tracker-9jm06nfo'
2021-05-30T22:28:21,662 Created temporary directory: /tmp/pip-unpack-gcdk1vw0
2021-05-30T22:28:21,662 Building wheels for collected packages: ngs-tools
2021-05-30T22:28:21,667   Created temporary directory: /tmp/pip-wheel-n2cnfn86
2021-05-30T22:28:21,668   Building wheel for ngs-tools (setup.py): started
2021-05-30T22:28:21,668   Destination directory: /tmp/pip-wheel-n2cnfn86
2021-05-30T22:28:21,669   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3clke8bi/ngs-tools_982fd6e9d59d43b6ab3419f72341f88d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-n2cnfn86
2021-05-30T22:28:22,711   running bdist_wheel
2021-05-30T22:28:22,716   running build
2021-05-30T22:28:22,716   running build_py
2021-05-30T22:28:22,852   creating build
2021-05-30T22:28:22,852   creating build/lib
2021-05-30T22:28:22,853   creating build/lib/ngs_tools
2021-05-30T22:28:22,854   copying ngs_tools/utils.py -> build/lib/ngs_tools
2021-05-30T22:28:22,857   copying ngs_tools/__init__.py -> build/lib/ngs_tools
2021-05-30T22:28:22,859   copying ngs_tools/logging.py -> build/lib/ngs_tools
2021-05-30T22:28:22,861   copying ngs_tools/sequence.py -> build/lib/ngs_tools
2021-05-30T22:28:22,863   copying ngs_tools/bam.py -> build/lib/ngs_tools
2021-05-30T22:28:22,866   creating build/lib/ngs_tools/chemistry
2021-05-30T22:28:22,867   copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:28:22,870   copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:28:22,872   copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:28:22,875   copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:28:22,878   creating build/lib/ngs_tools/fasta
2021-05-30T22:28:22,879   copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta
2021-05-30T22:28:22,882   copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta
2021-05-30T22:28:22,884   copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta
2021-05-30T22:28:22,887   creating build/lib/ngs_tools/fastq
2021-05-30T22:28:22,888   copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq
2021-05-30T22:28:22,891   copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq
2021-05-30T22:28:22,893   copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq
2021-05-30T22:28:22,896   creating build/lib/ngs_tools/gtf
2021-05-30T22:28:22,897   copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf
2021-05-30T22:28:22,900   copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf
2021-05-30T22:28:22,902   copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf
2021-05-30T22:28:22,904   copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf
2021-05-30T22:28:22,907   copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf
2021-05-30T22:28:22,909   running egg_info
2021-05-30T22:28:22,925   writing ngs_tools.egg-info/PKG-INFO
2021-05-30T22:28:22,927   writing dependency_links to ngs_tools.egg-info/dependency_links.txt
2021-05-30T22:28:22,930   writing requirements to ngs_tools.egg-info/requires.txt
2021-05-30T22:28:22,931   writing top-level names to ngs_tools.egg-info/top_level.txt
2021-05-30T22:28:22,940   adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-05-30T22:28:22,943   reading manifest file 'ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:28:22,947   reading manifest template 'MANIFEST.in'
2021-05-30T22:28:22,957   writing manifest file 'ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:28:22,962   creating build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:28:22,963   copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:28:23,025   copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:28:23,078   copying ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:28:23,672   copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:28:23,990   copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:28:24,002   copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:28:24,011   installing to build/bdist.linux-armv7l/wheel
2021-05-30T22:28:24,011   running install
2021-05-30T22:28:24,012   running install_lib
2021-05-30T22:28:24,017   creating build/bdist.linux-armv7l
2021-05-30T22:28:24,017   creating build/bdist.linux-armv7l/wheel
2021-05-30T22:28:24,020   creating build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:28:24,022   copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:28:24,025   copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:28:24,027   copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:28:24,031   creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:28:24,033   copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:28:24,036   copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:28:24,038   copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:28:24,044   creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:28:24,045   copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:28:24,060   copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:28:24,063   copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:28:24,424   copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:28:24,468   copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:28:25,172   copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:28:25,222   copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:28:25,225   creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:28:25,226   copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:28:25,229   copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:28:25,231   copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:28:25,233   copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:28:25,236   copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:28:25,239   creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:28:25,241   copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:28:25,243   copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:28:25,246   copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:28:25,250   creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:28:25,251   copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:28:25,254   copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:28:25,257   copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:28:25,260   copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:28:25,263   copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:28:25,265   running install_egg_info
2021-05-30T22:28:25,276   Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.2.2-py3.7.egg-info
2021-05-30T22:28:25,293   running install_scripts
2021-05-30T22:28:25,383   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-05-30T22:28:25,389   creating build/bdist.linux-armv7l/wheel/ngs_tools-1.2.2.dist-info/WHEEL
2021-05-30T22:28:25,392   creating '/tmp/pip-wheel-n2cnfn86/ngs_tools-1.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-05-30T22:28:25,395   adding 'ngs_tools/__init__.py'
2021-05-30T22:28:25,397   adding 'ngs_tools/bam.py'
2021-05-30T22:28:25,399   adding 'ngs_tools/logging.py'
2021-05-30T22:28:25,404   adding 'ngs_tools/sequence.py'
2021-05-30T22:28:25,406   adding 'ngs_tools/utils.py'
2021-05-30T22:28:25,410   adding 'ngs_tools/chemistry/Chemistry.py'
2021-05-30T22:28:25,412   adding 'ngs_tools/chemistry/SingleCellChemistry.py'
2021-05-30T22:28:25,414   adding 'ngs_tools/chemistry/SpatialChemistry.py'
2021-05-30T22:28:25,415   adding 'ngs_tools/chemistry/__init__.py'
2021-05-30T22:28:25,673   adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz'
2021-05-30T22:28:25,950   adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz'
2021-05-30T22:28:30,301   adding 'ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz'
2021-05-30T22:28:32,696   adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz'
2021-05-30T22:28:32,876   adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz'
2021-05-30T22:28:32,881   adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz'
2021-05-30T22:28:32,883   adding 'ngs_tools/fasta/Fasta.py'
2021-05-30T22:28:32,884   adding 'ngs_tools/fasta/FastaEntry.py'
2021-05-30T22:28:32,886   adding 'ngs_tools/fasta/__init__.py'
2021-05-30T22:28:32,888   adding 'ngs_tools/fastq/Fastq.py'
2021-05-30T22:28:32,889   adding 'ngs_tools/fastq/Read.py'
2021-05-30T22:28:32,891   adding 'ngs_tools/fastq/__init__.py'
2021-05-30T22:28:32,893   adding 'ngs_tools/gtf/Gtf.py'
2021-05-30T22:28:32,894   adding 'ngs_tools/gtf/GtfEntry.py'
2021-05-30T22:28:32,895   adding 'ngs_tools/gtf/Segment.py'
2021-05-30T22:28:32,897   adding 'ngs_tools/gtf/SegmentCollection.py'
2021-05-30T22:28:32,899   adding 'ngs_tools/gtf/__init__.py'
2021-05-30T22:28:32,901   adding 'ngs_tools-1.2.2.dist-info/LICENSE'
2021-05-30T22:28:32,902   adding 'ngs_tools-1.2.2.dist-info/METADATA'
2021-05-30T22:28:32,904   adding 'ngs_tools-1.2.2.dist-info/WHEEL'
2021-05-30T22:28:32,905   adding 'ngs_tools-1.2.2.dist-info/top_level.txt'
2021-05-30T22:28:32,905   adding 'ngs_tools-1.2.2.dist-info/RECORD'
2021-05-30T22:28:33,619   removing build/bdist.linux-armv7l/wheel
2021-05-30T22:28:33,736   Building wheel for ngs-tools (setup.py): finished with status 'done'
2021-05-30T22:28:34,275   Created wheel for ngs-tools: filename=ngs_tools-1.2.2-py3-none-any.whl size=51700659 sha256=682da6e59007cd48bb3f8c93cb752483e21e6862c377732587e3f19646625c0d
2021-05-30T22:28:34,276   Stored in directory: /tmp/pip-ephem-wheel-cache-747s3r70/wheels/79/2b/6d/1ba9e9f7b7ccf747b6bd0a21aab5707c16b1ad34e06b3d59ef
2021-05-30T22:28:34,312 Successfully built ngs-tools
2021-05-30T22:28:35,824 Removed build tracker: '/tmp/pip-req-tracker-9jm06nfo'