2021-05-30T22:32:30,683 Created temporary directory: /tmp/pip-ephem-wheel-cache-fc5odbnt
2021-05-30T22:32:30,687 Created temporary directory: /tmp/pip-req-tracker-4sd2gwva
2021-05-30T22:32:30,687 Initialized build tracking at /tmp/pip-req-tracker-4sd2gwva
2021-05-30T22:32:30,688 Created build tracker: /tmp/pip-req-tracker-4sd2gwva
2021-05-30T22:32:30,688 Entered build tracker: /tmp/pip-req-tracker-4sd2gwva
2021-05-30T22:32:30,689 Created temporary directory: /tmp/pip-wheel-0z_sc_z0
2021-05-30T22:32:30,727 1 location(s) to search for versions of ngs-tools:
2021-05-30T22:32:30,727 * https://pypi.org/simple/ngs-tools/
2021-05-30T22:32:30,727 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/
2021-05-30T22:32:30,728 Getting page https://pypi.org/simple/ngs-tools/
2021-05-30T22:32:30,729 Found index url https://pypi.org/simple
2021-05-30T22:32:30,818   Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2
2021-05-30T22:32:30,819   Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0
2021-05-30T22:32:30,820   Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1
2021-05-30T22:32:30,820   Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2
2021-05-30T22:32:30,821   Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3
2021-05-30T22:32:30,821 Skipping link: not a file: https://pypi.org/simple/ngs-tools/
2021-05-30T22:32:30,835 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates
2021-05-30T22:32:30,850 Collecting ngs-tools==1.2.3
2021-05-30T22:32:30,852   Created temporary directory: /tmp/pip-unpack-biyu5gqd
2021-05-30T22:32:36,116   Downloading ngs-tools-1.2.3.tar.gz (51.7 MB)
2021-05-30T22:32:42,608   Added ngs-tools==1.2.3 from https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce to build tracker '/tmp/pip-req-tracker-4sd2gwva'
2021-05-30T22:32:42,609     Running setup.py (path:/tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f/setup.py) egg_info for package ngs-tools
2021-05-30T22:32:42,610     Created temporary directory: /tmp/pip-pip-egg-info-_ptm6cjb
2021-05-30T22:32:42,610     Running command python setup.py egg_info
2021-05-30T22:32:43,653     running egg_info
2021-05-30T22:32:43,656     creating /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info
2021-05-30T22:32:43,657     writing /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/PKG-INFO
2021-05-30T22:32:43,660     writing dependency_links to /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/dependency_links.txt
2021-05-30T22:32:43,662     writing requirements to /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/requires.txt
2021-05-30T22:32:43,663     writing top-level names to /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/top_level.txt
2021-05-30T22:32:43,665     writing manifest file '/tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:32:43,814     adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-05-30T22:32:43,817     reading manifest file '/tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:32:43,818     reading manifest template 'MANIFEST.in'
2021-05-30T22:32:43,826     writing manifest file '/tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:32:43,887   Source in /tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f has version 1.2.3, which satisfies requirement ngs-tools==1.2.3 from https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce
2021-05-30T22:32:43,888   Removed ngs-tools==1.2.3 from https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce from build tracker '/tmp/pip-req-tracker-4sd2gwva'
2021-05-30T22:32:43,895 Created temporary directory: /tmp/pip-unpack-wgjc67q2
2021-05-30T22:32:43,895 Building wheels for collected packages: ngs-tools
2021-05-30T22:32:43,901   Created temporary directory: /tmp/pip-wheel-9sf4bb0b
2021-05-30T22:32:43,902   Building wheel for ngs-tools (setup.py): started
2021-05-30T22:32:43,902   Destination directory: /tmp/pip-wheel-9sf4bb0b
2021-05-30T22:32:43,903   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9sf4bb0b
2021-05-30T22:32:44,950   running bdist_wheel
2021-05-30T22:32:44,955   running build
2021-05-30T22:32:44,955   running build_py
2021-05-30T22:32:45,083   creating build
2021-05-30T22:32:45,084   creating build/lib
2021-05-30T22:32:45,084   creating build/lib/ngs_tools
2021-05-30T22:32:45,086   copying ngs_tools/sequence.py -> build/lib/ngs_tools
2021-05-30T22:32:45,089   copying ngs_tools/utils.py -> build/lib/ngs_tools
2021-05-30T22:32:45,091   copying ngs_tools/logging.py -> build/lib/ngs_tools
2021-05-30T22:32:45,093   copying ngs_tools/bam.py -> build/lib/ngs_tools
2021-05-30T22:32:45,095   copying ngs_tools/__init__.py -> build/lib/ngs_tools
2021-05-30T22:32:45,098   creating build/lib/ngs_tools/fastq
2021-05-30T22:32:45,099   copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq
2021-05-30T22:32:45,101   copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq
2021-05-30T22:32:45,104   copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq
2021-05-30T22:32:45,107   creating build/lib/ngs_tools/fasta
2021-05-30T22:32:45,107   copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta
2021-05-30T22:32:45,110   copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta
2021-05-30T22:32:45,112   copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta
2021-05-30T22:32:45,115   creating build/lib/ngs_tools/gtf
2021-05-30T22:32:45,117   copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf
2021-05-30T22:32:45,119   copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf
2021-05-30T22:32:45,122   copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf
2021-05-30T22:32:45,124   copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf
2021-05-30T22:32:45,127   copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf
2021-05-30T22:32:45,130   creating build/lib/ngs_tools/chemistry
2021-05-30T22:32:45,131   copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:32:45,135   copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:32:45,137   copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:32:45,140   copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry
2021-05-30T22:32:45,142   running egg_info
2021-05-30T22:32:45,158   writing ngs_tools.egg-info/PKG-INFO
2021-05-30T22:32:45,160   writing dependency_links to ngs_tools.egg-info/dependency_links.txt
2021-05-30T22:32:45,162   writing requirements to ngs_tools.egg-info/requires.txt
2021-05-30T22:32:45,164   writing top-level names to ngs_tools.egg-info/top_level.txt
2021-05-30T22:32:45,173   adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*')
2021-05-30T22:32:45,176   reading manifest file 'ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:32:45,181   reading manifest template 'MANIFEST.in'
2021-05-30T22:32:45,191   writing manifest file 'ngs_tools.egg-info/SOURCES.txt'
2021-05-30T22:32:45,198   creating build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:32:45,199   copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:32:45,242   copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:32:45,304   copying ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:32:45,958   copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,299   copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,313   copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,321   installing to build/bdist.linux-armv7l/wheel
2021-05-30T22:32:46,322   running install
2021-05-30T22:32:46,323   running install_lib
2021-05-30T22:32:46,327   creating build/bdist.linux-armv7l
2021-05-30T22:32:46,327   creating build/bdist.linux-armv7l/wheel
2021-05-30T22:32:46,330   creating build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:32:46,331   copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:32:46,334   copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:32:46,337   copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:32:46,340   creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:32:46,341   copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:32:46,343   copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:32:46,346   copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq
2021-05-30T22:32:46,348   copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:32:46,351   copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools
2021-05-30T22:32:46,354   creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:32:46,355   copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:32:46,357   copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:32:46,360   copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta
2021-05-30T22:32:46,363   creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:32:46,364   copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:32:46,367   copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:32:46,369   copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:32:46,372   copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:32:46,374   copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf
2021-05-30T22:32:46,377   creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:32:46,379   copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:32:46,383   creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,384   copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,725   copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,781   copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,795   copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,841   copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:32:46,844   copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists
2021-05-30T22:32:47,472   copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:32:47,474   copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:32:47,477   copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry
2021-05-30T22:32:47,478   running install_egg_info
2021-05-30T22:32:47,486   Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.2.3-py3.7.egg-info
2021-05-30T22:32:47,500   running install_scripts
2021-05-30T22:32:47,584   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-05-30T22:32:47,590   creating build/bdist.linux-armv7l/wheel/ngs_tools-1.2.3.dist-info/WHEEL
2021-05-30T22:32:47,593   creating '/tmp/pip-wheel-9sf4bb0b/ngs_tools-1.2.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-05-30T22:32:47,595   adding 'ngs_tools/__init__.py'
2021-05-30T22:32:47,598   adding 'ngs_tools/bam.py'
2021-05-30T22:32:47,600   adding 'ngs_tools/logging.py'
2021-05-30T22:32:47,604   adding 'ngs_tools/sequence.py'
2021-05-30T22:32:47,606   adding 'ngs_tools/utils.py'
2021-05-30T22:32:47,610   adding 'ngs_tools/chemistry/Chemistry.py'
2021-05-30T22:32:47,613   adding 'ngs_tools/chemistry/SingleCellChemistry.py'
2021-05-30T22:32:47,614   adding 'ngs_tools/chemistry/SpatialChemistry.py'
2021-05-30T22:32:47,615   adding 'ngs_tools/chemistry/__init__.py'
2021-05-30T22:32:47,869   adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz'
2021-05-30T22:32:48,145   adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz'
2021-05-30T22:32:52,487   adding 'ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz'
2021-05-30T22:32:55,121   adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz'
2021-05-30T22:32:55,301   adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz'
2021-05-30T22:32:55,306   adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz'
2021-05-30T22:32:55,309   adding 'ngs_tools/fasta/Fasta.py'
2021-05-30T22:32:55,310   adding 'ngs_tools/fasta/FastaEntry.py'
2021-05-30T22:32:55,312   adding 'ngs_tools/fasta/__init__.py'
2021-05-30T22:32:55,314   adding 'ngs_tools/fastq/Fastq.py'
2021-05-30T22:32:55,316   adding 'ngs_tools/fastq/Read.py'
2021-05-30T22:32:55,318   adding 'ngs_tools/fastq/__init__.py'
2021-05-30T22:32:55,320   adding 'ngs_tools/gtf/Gtf.py'
2021-05-30T22:32:55,322   adding 'ngs_tools/gtf/GtfEntry.py'
2021-05-30T22:32:55,324   adding 'ngs_tools/gtf/Segment.py'
2021-05-30T22:32:55,326   adding 'ngs_tools/gtf/SegmentCollection.py'
2021-05-30T22:32:55,328   adding 'ngs_tools/gtf/__init__.py'
2021-05-30T22:32:55,331   adding 'ngs_tools-1.2.3.dist-info/LICENSE'
2021-05-30T22:32:55,332   adding 'ngs_tools-1.2.3.dist-info/METADATA'
2021-05-30T22:32:55,334   adding 'ngs_tools-1.2.3.dist-info/WHEEL'
2021-05-30T22:32:55,335   adding 'ngs_tools-1.2.3.dist-info/top_level.txt'
2021-05-30T22:32:55,336   adding 'ngs_tools-1.2.3.dist-info/RECORD'
2021-05-30T22:32:56,028   removing build/bdist.linux-armv7l/wheel
2021-05-30T22:32:56,141   Building wheel for ngs-tools (setup.py): finished with status 'done'
2021-05-30T22:32:56,693   Created wheel for ngs-tools: filename=ngs_tools-1.2.3-py3-none-any.whl size=51700661 sha256=e4325ca6c2e61038f550ca9e5c513593ba4cdcafd0bb9e56dc9515e3734bde2d
2021-05-30T22:32:56,693   Stored in directory: /tmp/pip-ephem-wheel-cache-fc5odbnt/wheels/85/ab/c4/db3213556f46f0ef28bb6e49fcc424cbb2855c15932dc44e6f
2021-05-30T22:32:56,729 Successfully built ngs-tools
2021-05-30T22:32:58,307 Removed build tracker: '/tmp/pip-req-tracker-4sd2gwva'