2021-05-30T22:32:30,683 Created temporary directory: /tmp/pip-ephem-wheel-cache-fc5odbnt 2021-05-30T22:32:30,687 Created temporary directory: /tmp/pip-req-tracker-4sd2gwva 2021-05-30T22:32:30,687 Initialized build tracking at /tmp/pip-req-tracker-4sd2gwva 2021-05-30T22:32:30,688 Created build tracker: /tmp/pip-req-tracker-4sd2gwva 2021-05-30T22:32:30,688 Entered build tracker: /tmp/pip-req-tracker-4sd2gwva 2021-05-30T22:32:30,689 Created temporary directory: /tmp/pip-wheel-0z_sc_z0 2021-05-30T22:32:30,727 1 location(s) to search for versions of ngs-tools: 2021-05-30T22:32:30,727 * https://pypi.org/simple/ngs-tools/ 2021-05-30T22:32:30,727 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2021-05-30T22:32:30,728 Getting page https://pypi.org/simple/ngs-tools/ 2021-05-30T22:32:30,729 Found index url https://pypi.org/simple 2021-05-30T22:32:30,818 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2021-05-30T22:32:30,819 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2021-05-30T22:32:30,820 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2021-05-30T22:32:30,820 Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2 2021-05-30T22:32:30,821 Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3 2021-05-30T22:32:30,821 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2021-05-30T22:32:30,835 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2021-05-30T22:32:30,850 Collecting ngs-tools==1.2.3 2021-05-30T22:32:30,852 Created temporary directory: /tmp/pip-unpack-biyu5gqd 2021-05-30T22:32:36,116 Downloading ngs-tools-1.2.3.tar.gz (51.7 MB) 2021-05-30T22:32:42,608 Added ngs-tools==1.2.3 from https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce to build tracker '/tmp/pip-req-tracker-4sd2gwva' 2021-05-30T22:32:42,609 Running setup.py (path:/tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f/setup.py) egg_info for package ngs-tools 2021-05-30T22:32:42,610 Created temporary directory: /tmp/pip-pip-egg-info-_ptm6cjb 2021-05-30T22:32:42,610 Running command python setup.py egg_info 2021-05-30T22:32:43,653 running egg_info 2021-05-30T22:32:43,656 creating /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info 2021-05-30T22:32:43,657 writing /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/PKG-INFO 2021-05-30T22:32:43,660 writing dependency_links to /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/dependency_links.txt 2021-05-30T22:32:43,662 writing requirements to /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/requires.txt 2021-05-30T22:32:43,663 writing top-level names to /tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/top_level.txt 2021-05-30T22:32:43,665 writing manifest file '/tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:32:43,814 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-30T22:32:43,817 reading manifest file '/tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:32:43,818 reading manifest template 'MANIFEST.in' 2021-05-30T22:32:43,826 writing manifest file '/tmp/pip-pip-egg-info-_ptm6cjb/ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:32:43,887 Source in /tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f has version 1.2.3, which satisfies requirement ngs-tools==1.2.3 from https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce 2021-05-30T22:32:43,888 Removed ngs-tools==1.2.3 from https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce from build tracker '/tmp/pip-req-tracker-4sd2gwva' 2021-05-30T22:32:43,895 Created temporary directory: /tmp/pip-unpack-wgjc67q2 2021-05-30T22:32:43,895 Building wheels for collected packages: ngs-tools 2021-05-30T22:32:43,901 Created temporary directory: /tmp/pip-wheel-9sf4bb0b 2021-05-30T22:32:43,902 Building wheel for ngs-tools (setup.py): started 2021-05-30T22:32:43,902 Destination directory: /tmp/pip-wheel-9sf4bb0b 2021-05-30T22:32:43,903 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0z_sc_z0/ngs-tools_cd719c71ba0342f6ae7dc68ac1d0798f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9sf4bb0b 2021-05-30T22:32:44,950 running bdist_wheel 2021-05-30T22:32:44,955 running build 2021-05-30T22:32:44,955 running build_py 2021-05-30T22:32:45,083 creating build 2021-05-30T22:32:45,084 creating build/lib 2021-05-30T22:32:45,084 creating build/lib/ngs_tools 2021-05-30T22:32:45,086 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2021-05-30T22:32:45,089 copying ngs_tools/utils.py -> build/lib/ngs_tools 2021-05-30T22:32:45,091 copying ngs_tools/logging.py -> build/lib/ngs_tools 2021-05-30T22:32:45,093 copying ngs_tools/bam.py -> build/lib/ngs_tools 2021-05-30T22:32:45,095 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2021-05-30T22:32:45,098 creating build/lib/ngs_tools/fastq 2021-05-30T22:32:45,099 copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq 2021-05-30T22:32:45,101 copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq 2021-05-30T22:32:45,104 copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq 2021-05-30T22:32:45,107 creating build/lib/ngs_tools/fasta 2021-05-30T22:32:45,107 copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta 2021-05-30T22:32:45,110 copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta 2021-05-30T22:32:45,112 copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta 2021-05-30T22:32:45,115 creating build/lib/ngs_tools/gtf 2021-05-30T22:32:45,117 copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf 2021-05-30T22:32:45,119 copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf 2021-05-30T22:32:45,122 copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf 2021-05-30T22:32:45,124 copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf 2021-05-30T22:32:45,127 copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf 2021-05-30T22:32:45,130 creating build/lib/ngs_tools/chemistry 2021-05-30T22:32:45,131 copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:32:45,135 copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:32:45,137 copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:32:45,140 copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry 2021-05-30T22:32:45,142 running egg_info 2021-05-30T22:32:45,158 writing ngs_tools.egg-info/PKG-INFO 2021-05-30T22:32:45,160 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2021-05-30T22:32:45,162 writing requirements to ngs_tools.egg-info/requires.txt 2021-05-30T22:32:45,164 writing top-level names to ngs_tools.egg-info/top_level.txt 2021-05-30T22:32:45,173 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-30T22:32:45,176 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:32:45,181 reading manifest template 'MANIFEST.in' 2021-05-30T22:32:45,191 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-30T22:32:45,198 creating build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:32:45,199 copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:32:45,242 copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:32:45,304 copying ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:32:45,958 copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,299 copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,313 copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,321 installing to build/bdist.linux-armv7l/wheel 2021-05-30T22:32:46,322 running install 2021-05-30T22:32:46,323 running install_lib 2021-05-30T22:32:46,327 creating build/bdist.linux-armv7l 2021-05-30T22:32:46,327 creating build/bdist.linux-armv7l/wheel 2021-05-30T22:32:46,330 creating build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:32:46,331 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:32:46,334 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:32:46,337 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:32:46,340 creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:32:46,341 copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:32:46,343 copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:32:46,346 copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-30T22:32:46,348 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:32:46,351 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-30T22:32:46,354 creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:32:46,355 copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:32:46,357 copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:32:46,360 copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-30T22:32:46,363 creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:32:46,364 copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:32:46,367 copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:32:46,369 copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:32:46,372 copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:32:46,374 copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-30T22:32:46,377 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:32:46,379 copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:32:46,383 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,384 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,725 copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,781 copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,795 copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,841 copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:32:46,844 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-30T22:32:47,472 copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:32:47,474 copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:32:47,477 copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-30T22:32:47,478 running install_egg_info 2021-05-30T22:32:47,486 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.2.3-py3.7.egg-info 2021-05-30T22:32:47,500 running install_scripts 2021-05-30T22:32:47,584 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-05-30T22:32:47,590 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.2.3.dist-info/WHEEL 2021-05-30T22:32:47,593 creating '/tmp/pip-wheel-9sf4bb0b/ngs_tools-1.2.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-05-30T22:32:47,595 adding 'ngs_tools/__init__.py' 2021-05-30T22:32:47,598 adding 'ngs_tools/bam.py' 2021-05-30T22:32:47,600 adding 'ngs_tools/logging.py' 2021-05-30T22:32:47,604 adding 'ngs_tools/sequence.py' 2021-05-30T22:32:47,606 adding 'ngs_tools/utils.py' 2021-05-30T22:32:47,610 adding 'ngs_tools/chemistry/Chemistry.py' 2021-05-30T22:32:47,613 adding 'ngs_tools/chemistry/SingleCellChemistry.py' 2021-05-30T22:32:47,614 adding 'ngs_tools/chemistry/SpatialChemistry.py' 2021-05-30T22:32:47,615 adding 'ngs_tools/chemistry/__init__.py' 2021-05-30T22:32:47,869 adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz' 2021-05-30T22:32:48,145 adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz' 2021-05-30T22:32:52,487 adding 'ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz' 2021-05-30T22:32:55,121 adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz' 2021-05-30T22:32:55,301 adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz' 2021-05-30T22:32:55,306 adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz' 2021-05-30T22:32:55,309 adding 'ngs_tools/fasta/Fasta.py' 2021-05-30T22:32:55,310 adding 'ngs_tools/fasta/FastaEntry.py' 2021-05-30T22:32:55,312 adding 'ngs_tools/fasta/__init__.py' 2021-05-30T22:32:55,314 adding 'ngs_tools/fastq/Fastq.py' 2021-05-30T22:32:55,316 adding 'ngs_tools/fastq/Read.py' 2021-05-30T22:32:55,318 adding 'ngs_tools/fastq/__init__.py' 2021-05-30T22:32:55,320 adding 'ngs_tools/gtf/Gtf.py' 2021-05-30T22:32:55,322 adding 'ngs_tools/gtf/GtfEntry.py' 2021-05-30T22:32:55,324 adding 'ngs_tools/gtf/Segment.py' 2021-05-30T22:32:55,326 adding 'ngs_tools/gtf/SegmentCollection.py' 2021-05-30T22:32:55,328 adding 'ngs_tools/gtf/__init__.py' 2021-05-30T22:32:55,331 adding 'ngs_tools-1.2.3.dist-info/LICENSE' 2021-05-30T22:32:55,332 adding 'ngs_tools-1.2.3.dist-info/METADATA' 2021-05-30T22:32:55,334 adding 'ngs_tools-1.2.3.dist-info/WHEEL' 2021-05-30T22:32:55,335 adding 'ngs_tools-1.2.3.dist-info/top_level.txt' 2021-05-30T22:32:55,336 adding 'ngs_tools-1.2.3.dist-info/RECORD' 2021-05-30T22:32:56,028 removing build/bdist.linux-armv7l/wheel 2021-05-30T22:32:56,141 Building wheel for ngs-tools (setup.py): finished with status 'done' 2021-05-30T22:32:56,693 Created wheel for ngs-tools: filename=ngs_tools-1.2.3-py3-none-any.whl size=51700661 sha256=e4325ca6c2e61038f550ca9e5c513593ba4cdcafd0bb9e56dc9515e3734bde2d 2021-05-30T22:32:56,693 Stored in directory: /tmp/pip-ephem-wheel-cache-fc5odbnt/wheels/85/ab/c4/db3213556f46f0ef28bb6e49fcc424cbb2855c15932dc44e6f 2021-05-30T22:32:56,729 Successfully built ngs-tools 2021-05-30T22:32:58,307 Removed build tracker: '/tmp/pip-req-tracker-4sd2gwva'