2021-05-31T17:09:02,122 Created temporary directory: /tmp/pip-ephem-wheel-cache-0cojuazu 2021-05-31T17:09:02,125 Created temporary directory: /tmp/pip-req-tracker-kfegz8uh 2021-05-31T17:09:02,126 Initialized build tracking at /tmp/pip-req-tracker-kfegz8uh 2021-05-31T17:09:02,126 Created build tracker: /tmp/pip-req-tracker-kfegz8uh 2021-05-31T17:09:02,126 Entered build tracker: /tmp/pip-req-tracker-kfegz8uh 2021-05-31T17:09:02,127 Created temporary directory: /tmp/pip-wheel-jzya9rzy 2021-05-31T17:09:02,165 1 location(s) to search for versions of ngs-tools: 2021-05-31T17:09:02,165 * https://pypi.org/simple/ngs-tools/ 2021-05-31T17:09:02,166 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2021-05-31T17:09:02,167 Getting page https://pypi.org/simple/ngs-tools/ 2021-05-31T17:09:02,169 Found index url https://pypi.org/simple 2021-05-31T17:09:02,265 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz#sha256=1655e20b854e794ff6a8f519ed9e892ef24b747ad94e01ae5aa1e2c1f6de6d5d (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2021-05-31T17:09:02,266 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz#sha256=6462ce10eb5bf16c779815c467a6425f85736a7d716d876410efd75de01182fe (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2021-05-31T17:09:02,267 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz#sha256=793467239a91998f30015de6427b4b750e158a9a2e4b081206169c9e861eb39f (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2021-05-31T17:09:02,268 Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz#sha256=e20db65e63b6325da0753078b90559bacb31da316412c1f0b8c6122aa0f4e733 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2 2021-05-31T17:09:02,269 Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz#sha256=ddb6022fe8cc2e1e106702f668366fe16b27bc10fee67dfad2808b63baba26ce (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.3 2021-05-31T17:09:02,270 Found link https://files.pythonhosted.org/packages/cb/a0/bfbf48866af8f753bfacf0c089e4872351ecb6766706df7f94fa9a94a390/ngs-tools-1.3.0.tar.gz#sha256=2afdea16253b5000e7c7fc725819067a069ce9407fda76098fe34d37a2379e74 (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.3.0 2021-05-31T17:09:02,270 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2021-05-31T17:09:02,285 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2021-05-31T17:09:02,300 Collecting ngs-tools==1.3.0 2021-05-31T17:09:02,302 Created temporary directory: /tmp/pip-unpack-wbzxo1eg 2021-05-31T17:09:06,229 Downloading ngs-tools-1.3.0.tar.gz (51.7 MB) 2021-05-31T17:09:12,765 Added ngs-tools==1.3.0 from https://files.pythonhosted.org/packages/cb/a0/bfbf48866af8f753bfacf0c089e4872351ecb6766706df7f94fa9a94a390/ngs-tools-1.3.0.tar.gz#sha256=2afdea16253b5000e7c7fc725819067a069ce9407fda76098fe34d37a2379e74 to build tracker '/tmp/pip-req-tracker-kfegz8uh' 2021-05-31T17:09:12,766 Running setup.py (path:/tmp/pip-wheel-jzya9rzy/ngs-tools_deb7c9798de14733bd9ea1a424af797e/setup.py) egg_info for package ngs-tools 2021-05-31T17:09:12,767 Created temporary directory: /tmp/pip-pip-egg-info-fa6i2qhy 2021-05-31T17:09:12,767 Running command python setup.py egg_info 2021-05-31T17:09:13,834 running egg_info 2021-05-31T17:09:13,837 creating /tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info 2021-05-31T17:09:13,839 writing /tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info/PKG-INFO 2021-05-31T17:09:13,842 writing dependency_links to /tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info/dependency_links.txt 2021-05-31T17:09:13,845 writing requirements to /tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info/requires.txt 2021-05-31T17:09:13,846 writing top-level names to /tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info/top_level.txt 2021-05-31T17:09:13,848 writing manifest file '/tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info/SOURCES.txt' 2021-05-31T17:09:13,999 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-31T17:09:14,002 reading manifest file '/tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info/SOURCES.txt' 2021-05-31T17:09:14,004 reading manifest template 'MANIFEST.in' 2021-05-31T17:09:14,014 writing manifest file '/tmp/pip-pip-egg-info-fa6i2qhy/ngs_tools.egg-info/SOURCES.txt' 2021-05-31T17:09:14,077 Source in /tmp/pip-wheel-jzya9rzy/ngs-tools_deb7c9798de14733bd9ea1a424af797e has version 1.3.0, which satisfies requirement ngs-tools==1.3.0 from https://files.pythonhosted.org/packages/cb/a0/bfbf48866af8f753bfacf0c089e4872351ecb6766706df7f94fa9a94a390/ngs-tools-1.3.0.tar.gz#sha256=2afdea16253b5000e7c7fc725819067a069ce9407fda76098fe34d37a2379e74 2021-05-31T17:09:14,078 Removed ngs-tools==1.3.0 from https://files.pythonhosted.org/packages/cb/a0/bfbf48866af8f753bfacf0c089e4872351ecb6766706df7f94fa9a94a390/ngs-tools-1.3.0.tar.gz#sha256=2afdea16253b5000e7c7fc725819067a069ce9407fda76098fe34d37a2379e74 from build tracker '/tmp/pip-req-tracker-kfegz8uh' 2021-05-31T17:09:14,084 Created temporary directory: /tmp/pip-unpack-oe0i6p12 2021-05-31T17:09:14,085 Building wheels for collected packages: ngs-tools 2021-05-31T17:09:14,090 Created temporary directory: /tmp/pip-wheel-8nk_h5fx 2021-05-31T17:09:14,090 Building wheel for ngs-tools (setup.py): started 2021-05-31T17:09:14,090 Destination directory: /tmp/pip-wheel-8nk_h5fx 2021-05-31T17:09:14,091 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jzya9rzy/ngs-tools_deb7c9798de14733bd9ea1a424af797e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jzya9rzy/ngs-tools_deb7c9798de14733bd9ea1a424af797e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8nk_h5fx 2021-05-31T17:09:15,138 running bdist_wheel 2021-05-31T17:09:15,143 running build 2021-05-31T17:09:15,143 running build_py 2021-05-31T17:09:15,280 creating build 2021-05-31T17:09:15,281 creating build/lib 2021-05-31T17:09:15,282 creating build/lib/ngs_tools 2021-05-31T17:09:15,283 copying ngs_tools/utils.py -> build/lib/ngs_tools 2021-05-31T17:09:15,286 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2021-05-31T17:09:15,288 copying ngs_tools/logging.py -> build/lib/ngs_tools 2021-05-31T17:09:15,290 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2021-05-31T17:09:15,293 copying ngs_tools/bam.py -> build/lib/ngs_tools 2021-05-31T17:09:15,296 creating build/lib/ngs_tools/chemistry 2021-05-31T17:09:15,297 copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry 2021-05-31T17:09:15,300 copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry 2021-05-31T17:09:15,302 copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry 2021-05-31T17:09:15,305 copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry 2021-05-31T17:09:15,308 creating build/lib/ngs_tools/fasta 2021-05-31T17:09:15,309 copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta 2021-05-31T17:09:15,312 copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta 2021-05-31T17:09:15,314 copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta 2021-05-31T17:09:15,317 creating build/lib/ngs_tools/fastq 2021-05-31T17:09:15,318 copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq 2021-05-31T17:09:15,320 copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq 2021-05-31T17:09:15,323 copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq 2021-05-31T17:09:15,326 creating build/lib/ngs_tools/gtf 2021-05-31T17:09:15,327 copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf 2021-05-31T17:09:15,329 copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf 2021-05-31T17:09:15,332 copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf 2021-05-31T17:09:15,334 copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf 2021-05-31T17:09:15,337 copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf 2021-05-31T17:09:15,339 running egg_info 2021-05-31T17:09:15,354 writing ngs_tools.egg-info/PKG-INFO 2021-05-31T17:09:15,356 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2021-05-31T17:09:15,358 writing requirements to ngs_tools.egg-info/requires.txt 2021-05-31T17:09:15,360 writing top-level names to ngs_tools.egg-info/top_level.txt 2021-05-31T17:09:15,368 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-05-31T17:09:15,371 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-31T17:09:15,376 reading manifest template 'MANIFEST.in' 2021-05-31T17:09:15,386 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2021-05-31T17:09:15,390 creating build/lib/ngs_tools/chemistry/whitelists 2021-05-31T17:09:15,391 copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-31T17:09:15,436 copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-31T17:09:15,483 copying ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,105 copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,479 copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,491 copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,500 installing to build/bdist.linux-armv7l/wheel 2021-05-31T17:09:16,501 running install 2021-05-31T17:09:16,502 running install_lib 2021-05-31T17:09:16,506 creating build/bdist.linux-armv7l 2021-05-31T17:09:16,507 creating build/bdist.linux-armv7l/wheel 2021-05-31T17:09:16,510 creating build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-31T17:09:16,511 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-31T17:09:16,515 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-31T17:09:16,518 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-31T17:09:16,521 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-31T17:09:16,523 copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-31T17:09:16,527 copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-31T17:09:16,530 copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-31T17:09:16,534 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,536 copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,551 copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,554 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-31T17:09:16,968 copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-31T17:09:17,011 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-31T17:09:17,634 copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2021-05-31T17:09:17,694 copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2021-05-31T17:09:17,697 creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-31T17:09:17,698 copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-31T17:09:17,701 copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-31T17:09:17,704 copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2021-05-31T17:09:17,706 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-31T17:09:17,710 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2021-05-31T17:09:17,714 creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-31T17:09:17,715 copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-31T17:09:17,717 copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-31T17:09:17,720 copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2021-05-31T17:09:17,723 creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-31T17:09:17,724 copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-31T17:09:17,727 copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-31T17:09:17,730 copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-31T17:09:17,732 copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-31T17:09:17,735 copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2021-05-31T17:09:17,737 running install_egg_info 2021-05-31T17:09:17,747 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.3.0-py3.7.egg-info 2021-05-31T17:09:17,763 running install_scripts 2021-05-31T17:09:17,848 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-05-31T17:09:17,853 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.3.0.dist-info/WHEEL 2021-05-31T17:09:17,856 creating '/tmp/pip-wheel-8nk_h5fx/ngs_tools-1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-05-31T17:09:17,858 adding 'ngs_tools/__init__.py' 2021-05-31T17:09:17,860 adding 'ngs_tools/bam.py' 2021-05-31T17:09:17,862 adding 'ngs_tools/logging.py' 2021-05-31T17:09:17,865 adding 'ngs_tools/sequence.py' 2021-05-31T17:09:17,868 adding 'ngs_tools/utils.py' 2021-05-31T17:09:17,872 adding 'ngs_tools/chemistry/Chemistry.py' 2021-05-31T17:09:17,874 adding 'ngs_tools/chemistry/SingleCellChemistry.py' 2021-05-31T17:09:17,875 adding 'ngs_tools/chemistry/SpatialChemistry.py' 2021-05-31T17:09:17,876 adding 'ngs_tools/chemistry/__init__.py' 2021-05-31T17:09:18,134 adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz' 2021-05-31T17:09:18,415 adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz' 2021-05-31T17:09:22,823 adding 'ngs_tools/chemistry/whitelists/10x_version3_feature_map.txt.gz' 2021-05-31T17:09:25,263 adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz' 2021-05-31T17:09:25,443 adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz' 2021-05-31T17:09:25,448 adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz' 2021-05-31T17:09:25,450 adding 'ngs_tools/fasta/Fasta.py' 2021-05-31T17:09:25,451 adding 'ngs_tools/fasta/FastaEntry.py' 2021-05-31T17:09:25,453 adding 'ngs_tools/fasta/__init__.py' 2021-05-31T17:09:25,455 adding 'ngs_tools/fastq/Fastq.py' 2021-05-31T17:09:25,456 adding 'ngs_tools/fastq/Read.py' 2021-05-31T17:09:25,458 adding 'ngs_tools/fastq/__init__.py' 2021-05-31T17:09:25,460 adding 'ngs_tools/gtf/Gtf.py' 2021-05-31T17:09:25,461 adding 'ngs_tools/gtf/GtfEntry.py' 2021-05-31T17:09:25,463 adding 'ngs_tools/gtf/Segment.py' 2021-05-31T17:09:25,465 adding 'ngs_tools/gtf/SegmentCollection.py' 2021-05-31T17:09:25,467 adding 'ngs_tools/gtf/__init__.py' 2021-05-31T17:09:25,469 adding 'ngs_tools-1.3.0.dist-info/LICENSE' 2021-05-31T17:09:25,470 adding 'ngs_tools-1.3.0.dist-info/METADATA' 2021-05-31T17:09:25,471 adding 'ngs_tools-1.3.0.dist-info/WHEEL' 2021-05-31T17:09:25,472 adding 'ngs_tools-1.3.0.dist-info/top_level.txt' 2021-05-31T17:09:25,473 adding 'ngs_tools-1.3.0.dist-info/RECORD' 2021-05-31T17:09:26,212 removing build/bdist.linux-armv7l/wheel 2021-05-31T17:09:26,333 Building wheel for ngs-tools (setup.py): finished with status 'done' 2021-05-31T17:09:26,873 Created wheel for ngs-tools: filename=ngs_tools-1.3.0-py3-none-any.whl size=51704171 sha256=637c180e653c8cc118967d5fffe8c5e5c72db0681df97b983f940d465d59e7a0 2021-05-31T17:09:26,873 Stored in directory: /tmp/pip-ephem-wheel-cache-0cojuazu/wheels/e4/a6/5a/382504c923d9fe611e6b19817a9042c47cdbc40fa5a4d1e321 2021-05-31T17:09:26,909 Successfully built ngs-tools 2021-05-31T17:09:28,372 Removed build tracker: '/tmp/pip-req-tracker-kfegz8uh'