2021-06-02T20:02:06,172 Created temporary directory: /tmp/pip-ephem-wheel-cache-4mmnc3rg 2021-06-02T20:02:06,176 Created temporary directory: /tmp/pip-req-tracker-uno4aju_ 2021-06-02T20:02:06,176 Initialized build tracking at /tmp/pip-req-tracker-uno4aju_ 2021-06-02T20:02:06,177 Created build tracker: /tmp/pip-req-tracker-uno4aju_ 2021-06-02T20:02:06,177 Entered build tracker: /tmp/pip-req-tracker-uno4aju_ 2021-06-02T20:02:06,177 Created temporary directory: /tmp/pip-wheel-daitml0v 2021-06-02T20:02:06,217 1 location(s) to search for versions of pysb: 2021-06-02T20:02:06,217 * https://pypi.org/simple/pysb/ 2021-06-02T20:02:06,217 Fetching project page and analyzing links: https://pypi.org/simple/pysb/ 2021-06-02T20:02:06,218 Getting page https://pypi.org/simple/pysb/ 2021-06-02T20:02:06,220 Found index url https://pypi.org/simple 2021-06-02T20:02:06,322 Found link https://files.pythonhosted.org/packages/d0/95/38ec0bb8707d5914457261dc26509c2be7ae99f5816a40c5a15994f99b2a/pysb-0.1.3.tar.gz#sha256=c9d6cba3f8b45c93ffcc3f00a603fb450f5fc4a7486c8f25e5a2e250459cd2ff (from https://pypi.org/simple/pysb/), version: 0.1.3 2021-06-02T20:02:06,323 Found link https://files.pythonhosted.org/packages/dd/c6/3e5c8f0d7d6e48b0d6f4e84b0bfa910ad809ced993db7863e23626f0eb9a/pysb-0.1.4.tar.gz#sha256=0abf3e9b8c38868e4e1f3a4641e52ca5f81546144893efbccf0054b410968af9 (from https://pypi.org/simple/pysb/), version: 0.1.4 2021-06-02T20:02:06,323 Found link https://files.pythonhosted.org/packages/90/43/150ebafa3b881f53061326d043c1f8bbabd051f13b2beea8d54e79ff8f16/pysb-0.1.5.tar.gz#sha256=22a88c00ff1e17c3089079c0cc6edb8bce02550a57540e2ebdfd007037039c43 (from https://pypi.org/simple/pysb/), version: 0.1.5 2021-06-02T20:02:06,324 Found link https://files.pythonhosted.org/packages/ad/57/6ff9ac8b5efaf6517aae862597d8ca59c16430e3aed13780a477662175ba/pysb-0.1.6.tar.gz#sha256=f41185b0238e0dcf66fd6e565a921fdc82770b3f60e62209ede04e03fe592806 (from https://pypi.org/simple/pysb/), version: 0.1.6 2021-06-02T20:02:06,324 Found link https://files.pythonhosted.org/packages/97/47/d4096b6b84ff6666bab62b8bfb2f05e7a63684fb8917cee69e2963ae3c5d/pysb-0.1.7.tar.gz#sha256=9251f0da12d4761b2d8bceabbcdb2cc4763f06317f6222aa9720ba49d11441ee (from https://pypi.org/simple/pysb/), version: 0.1.7 2021-06-02T20:02:06,324 Found link https://files.pythonhosted.org/packages/83/2c/7b9f4ee2fc8d42a3f3eee88f3c3f27c2d78acd4caaecc736c6298cf9e477/pysb-0.1.8.tar.gz#sha256=7c98c437a05282dc7a0c66e6696a938d849cd32d2fac3c4938503997ebb346ee (from https://pypi.org/simple/pysb/), version: 0.1.8 2021-06-02T20:02:06,324 Found link https://files.pythonhosted.org/packages/69/77/3db9d2401466092097b4f66c1b5c643d7e38df6d32e49b19647c57168b61/pysb-0.1.9.tar.gz#sha256=89e8efda97a6decb1525fbf5445439510a0b01d1cd16e296662159abc5e3ca9b (from https://pypi.org/simple/pysb/), version: 0.1.9 2021-06-02T20:02:06,325 Found link https://files.pythonhosted.org/packages/2d/d4/043c122f4351366973bc0958a6bafb224bfd6df7d84622adda95b100bebe/pysb-0.1.10.tar.gz#sha256=44ec0c69acfd756f26e7de07eb890b964744b82ee8be6264a600dbf0aded33de (from https://pypi.org/simple/pysb/), version: 0.1.10 2021-06-02T20:02:06,325 Found link https://files.pythonhosted.org/packages/2b/ff/7faaf379a3721f7ee39faec94fc78c2406f825cc738ef8e60cbe3fe192cb/pysb-0.1.11.tar.gz#sha256=3af0a2d37d0dde81b2479c03e3d0cb6c4c0b439559c0ae2552e2507c044dc3fd (from https://pypi.org/simple/pysb/), version: 0.1.11 2021-06-02T20:02:06,325 Found link https://files.pythonhosted.org/packages/88/cc/1cf17b0c5c3e679b26b0cd7927c2d45e9272ee91a69b84125af1e57f0e18/pysb-1.0.0.tar.gz#sha256=6987a39e26227e7ac987995fa1bdd01f906e162ce8f8750499ae546c557e1214 (from https://pypi.org/simple/pysb/), version: 1.0.0 2021-06-02T20:02:06,326 Found link https://files.pythonhosted.org/packages/ce/52/2d372671a6b24c981d2c55efa2ad6e7ba2f7ad59317ae58b1a65b7596dfd/pysb-1.0.1.tar.gz#sha256=118d2c947b245f0c5b9f3e85a59bb4b613059325b6d5fb44ea1565b74a3b748f (from https://pypi.org/simple/pysb/), version: 1.0.1 2021-06-02T20:02:06,326 Found link https://files.pythonhosted.org/packages/16/c9/7bd74e99c3ddb317307c4871d974f252c5b5de339a09f47e53a9116bd9dc/pysb-1.1.0.tar.gz#sha256=3a0aaf81425318bb4e8ab01c6d2699f4e3fe730df4bd8c258772604cbdba3dcd (from https://pypi.org/simple/pysb/), version: 1.1.0 2021-06-02T20:02:06,326 Found link https://files.pythonhosted.org/packages/4e/6a/39ceadc46d09cc2b2a42a5ef7cd65bc8d535ade2492efc8338a4e6ae5fdb/pysb-1.1.1.tar.gz#sha256=03d96784c558f557e9ec1f9d006670c6ce6a28f92e5724e75143e328426fb153 (from https://pypi.org/simple/pysb/), version: 1.1.1 2021-06-02T20:02:06,327 Found link https://files.pythonhosted.org/packages/ac/ce/f692a3683e7d2ba99bc29f0491490684f6ffdb2358fac969fb162268a1fe/pysb-1.2.0.tar.gz#sha256=625d7b26072e15f122daca4eec283ef74df5c18ca5b431d89ef5479ef5cd9a69 (from https://pypi.org/simple/pysb/), version: 1.2.0 2021-06-02T20:02:06,327 Found link https://files.pythonhosted.org/packages/da/91/9546968cfc9e53c0e52a06602299b56fe05f69cee890c6497991d4d8d0e9/pysb-1.2.1.tar.gz#sha256=09a92fbc47ca93952d186c7d58b993df8173bc853e17ff7895eada18d3bf14b9 (from https://pypi.org/simple/pysb/), version: 1.2.1 2021-06-02T20:02:06,327 Found link https://files.pythonhosted.org/packages/52/53/3e174e8c7ea81409e342b06b126ade799840051c2f674358ebe8caafb8ba/pysb-1.2.2.tar.gz#sha256=79b6a9158a6ec74e0f4f0d508851ac4021222ee386c014e5a4bb38c1f0fae7b8 (from https://pypi.org/simple/pysb/), version: 1.2.2 2021-06-02T20:02:06,327 Found link https://files.pythonhosted.org/packages/93/03/403b0e4e634002dc41ac761abca340c66b4ddf1f309fc164504a1b7e6e48/pysb-1.3.0.tar.gz#sha256=e255271d762691c718806d602e7b7b619872c90288eacdc224b58710a0fc8a7b (from https://pypi.org/simple/pysb/), version: 1.3.0 2021-06-02T20:02:06,328 Found link https://files.pythonhosted.org/packages/cc/fd/5af895669c3e361d06050293c2be3815dc41524a8ff79f90f36717c6c7c0/pysb-1.4.0.tar.gz#sha256=dd65a6fa20a192214247d3248a725ccb37139dabbac22707624ceab988a31ce5 (from https://pypi.org/simple/pysb/), version: 1.4.0 2021-06-02T20:02:06,328 Found link https://files.pythonhosted.org/packages/bb/b0/af7e573adcfbafb37cd73ba98fad73b9c1838bd00421697df68ca2486cc2/pysb-1.5.0.tar.gz#sha256=5aa49d5019af317cd29d3462a9f305e7f1b1137347f53a64cb79e98a98c12f6e (from https://pypi.org/simple/pysb/), version: 1.5.0 2021-06-02T20:02:06,328 Found link https://files.pythonhosted.org/packages/10/fb/a52b99ec02064d7f7a560dab813c5ac318e96ee9dbe10bc1f954d8968436/pysb-1.6.0.tar.gz#sha256=cbe4e0eac66bd9097554b85d1d7d2a10e3031e4a1faaddb9d222708f609c82cf (from https://pypi.org/simple/pysb/), version: 1.6.0 2021-06-02T20:02:06,329 Found link https://files.pythonhosted.org/packages/a4/82/5b9739400888d4bdd760ccc696fbb1f6a01e1e34eb3521c4e6dcc9c194c4/pysb-1.7.0.tar.gz#sha256=4ddbc93b15783ba62c62ff2e16141ee3b57082d95df9c7aa2879924308da707d (from https://pypi.org/simple/pysb/), version: 1.7.0 2021-06-02T20:02:06,329 Found link https://files.pythonhosted.org/packages/c5/e7/4796b8017dca3c5e9526715585da8cef9f8870e8a48cca68e35eec39c9ed/pysb-1.8.0.tar.gz#sha256=e5123775c18e8b68233cb3df89b6f99456373feb66028fd72fbe72a1283c6350 (from https://pypi.org/simple/pysb/), version: 1.8.0 2021-06-02T20:02:06,329 Found link https://files.pythonhosted.org/packages/67/a8/dd3133119bc06bd09860c3e61155f20252dd5d9bd6677e70756d4c878277/pysb-1.8.1.tar.gz#sha256=e62f4ea8d49535913dfb855df78ea8d2366673f5fe500691f605315ed32f08ff (from https://pypi.org/simple/pysb/), version: 1.8.1 2021-06-02T20:02:06,329 Found link https://files.pythonhosted.org/packages/80/b5/1a079af59e6d36a31127fb50332726e60ee0a1736d389ea722c56bfd4dbe/pysb-1.9.0.tar.gz#sha256=c613d196dc1b7a01a03229f915e3e5870dbd818c903149bce451f01522bfdd27 (from https://pypi.org/simple/pysb/), version: 1.9.0 2021-06-02T20:02:06,330 Found link https://files.pythonhosted.org/packages/ca/a2/7d42b33ade5060268a2938afc257dfb8034ff49322857c4ecce13a16dd60/pysb-1.9.1.tar.gz#sha256=2c3c51a8b3a0ce6ea771f761bc9fb366e9c9fe9860e90cc49e34e12a615956bb (from https://pypi.org/simple/pysb/), version: 1.9.1 2021-06-02T20:02:06,330 Found link https://files.pythonhosted.org/packages/e1/92/f6712c0783c481a3c9b9282c0da60ecefe1e1bb32603cb278d2398a58133/pysb-1.10.0.tar.gz#sha256=4fb99c5113817ae0e5d9185613c40ee9eeffc35eb0c7d6486d2ff8d5485fb484 (from https://pypi.org/simple/pysb/), version: 1.10.0 2021-06-02T20:02:06,330 Found link https://files.pythonhosted.org/packages/ef/bd/1a8c8e062af5807fee56cc70afe2cfd384e1fdc46bb9d2c4bd5ee0239a04/pysb-1.11.0.tar.gz#sha256=b827cb30ada1bf2cb60c2d37d44879f17864c0af5d4da169c2a762948e2b4b26 (from https://pypi.org/simple/pysb/), version: 1.11.0 2021-06-02T20:02:06,332 Found link https://files.pythonhosted.org/packages/b4/ad/0f98b45857d2c41b193f61699da093803aae00a9a017791d030da490fb45/pysb-1.11.1.tar.gz#sha256=37f7f620d043c6247af4b3c65461f9aad09532636ed99b37a2ff4ebafff7d43f (from https://pypi.org/simple/pysb/) (requires-python:>2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*), version: 1.11.1 2021-06-02T20:02:06,332 Found link https://files.pythonhosted.org/packages/d6/7d/1b06a51aa5403e526b63fddfc38885fcba7d0c104ffc6e2462979ad93d96/pysb-1.12.0.tar.gz#sha256=db0d153c1b48c03ae554835aaa472eb3482cdf41cb336328aa1f1e81fa130be2 (from https://pypi.org/simple/pysb/) (requires-python:>=3.6), version: 1.12.0 2021-06-02T20:02:06,333 Found link https://files.pythonhosted.org/packages/00/22/dfeee87ae7f9b35a463ffd25a15803dcc88971e5c8249af0b1a19bfe5293/pysb-1.13.0.tar.gz#sha256=eec66b2fc25e53537943f4eaf16bcf4f0b401f1110712da981ebd82eeb754c33 (from https://pypi.org/simple/pysb/) (requires-python:>=3.6), version: 1.13.0 2021-06-02T20:02:06,333 Skipping link: not a file: https://pypi.org/simple/pysb/ 2021-06-02T20:02:06,351 Given no hashes to check 1 links for project 'pysb': discarding no candidates 2021-06-02T20:02:06,367 Collecting pysb==1.13.0 2021-06-02T20:02:06,369 Created temporary directory: /tmp/pip-unpack-hacjg997 2021-06-02T20:02:06,718 Downloading pysb-1.13.0.tar.gz (320 kB) 2021-06-02T20:02:07,224 Added pysb==1.13.0 from https://files.pythonhosted.org/packages/00/22/dfeee87ae7f9b35a463ffd25a15803dcc88971e5c8249af0b1a19bfe5293/pysb-1.13.0.tar.gz#sha256=eec66b2fc25e53537943f4eaf16bcf4f0b401f1110712da981ebd82eeb754c33 to build tracker '/tmp/pip-req-tracker-uno4aju_' 2021-06-02T20:02:07,225 Running setup.py (path:/tmp/pip-wheel-daitml0v/pysb_ead364695abc48a6b1b896cd9fcd5e10/setup.py) egg_info for package pysb 2021-06-02T20:02:07,226 Created temporary directory: /tmp/pip-pip-egg-info-uee8m7xm 2021-06-02T20:02:07,226 Running command python setup.py egg_info 2021-06-02T20:02:11,317 running egg_info 2021-06-02T20:02:11,320 creating /tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info 2021-06-02T20:02:11,321 writing /tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info/PKG-INFO 2021-06-02T20:02:11,324 writing dependency_links to /tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info/dependency_links.txt 2021-06-02T20:02:11,327 writing requirements to /tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info/requires.txt 2021-06-02T20:02:11,328 writing top-level names to /tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info/top_level.txt 2021-06-02T20:02:11,331 writing manifest file '/tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info/SOURCES.txt' 2021-06-02T20:02:11,363 adding license file 'LICENSE.txt' (matched pattern 'LICEN[CS]E*') 2021-06-02T20:02:11,367 reading manifest file '/tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info/SOURCES.txt' 2021-06-02T20:02:11,369 reading manifest template 'MANIFEST.in' 2021-06-02T20:02:11,378 no previously-included directories found matching 'doc/_build' 2021-06-02T20:02:11,387 writing manifest file '/tmp/pip-pip-egg-info-uee8m7xm/pysb.egg-info/SOURCES.txt' 2021-06-02T20:02:11,456 Source in /tmp/pip-wheel-daitml0v/pysb_ead364695abc48a6b1b896cd9fcd5e10 has version 1.13.0, which satisfies requirement pysb==1.13.0 from https://files.pythonhosted.org/packages/00/22/dfeee87ae7f9b35a463ffd25a15803dcc88971e5c8249af0b1a19bfe5293/pysb-1.13.0.tar.gz#sha256=eec66b2fc25e53537943f4eaf16bcf4f0b401f1110712da981ebd82eeb754c33 2021-06-02T20:02:11,458 Removed pysb==1.13.0 from https://files.pythonhosted.org/packages/00/22/dfeee87ae7f9b35a463ffd25a15803dcc88971e5c8249af0b1a19bfe5293/pysb-1.13.0.tar.gz#sha256=eec66b2fc25e53537943f4eaf16bcf4f0b401f1110712da981ebd82eeb754c33 from build tracker '/tmp/pip-req-tracker-uno4aju_' 2021-06-02T20:02:11,464 Created temporary directory: /tmp/pip-unpack-rlikn_qg 2021-06-02T20:02:11,464 Building wheels for collected packages: pysb 2021-06-02T20:02:11,469 Created temporary directory: /tmp/pip-wheel-uvn82da4 2021-06-02T20:02:11,469 Building wheel for pysb (setup.py): started 2021-06-02T20:02:11,470 Destination directory: /tmp/pip-wheel-uvn82da4 2021-06-02T20:02:11,470 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-daitml0v/pysb_ead364695abc48a6b1b896cd9fcd5e10/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-daitml0v/pysb_ead364695abc48a6b1b896cd9fcd5e10/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-uvn82da4 2021-06-02T20:02:13,146 running bdist_wheel 2021-06-02T20:02:13,150 running build 2021-06-02T20:02:13,151 running build_py 2021-06-02T20:02:13,157 creating build 2021-06-02T20:02:13,157 creating build/lib 2021-06-02T20:02:13,158 creating build/lib/pysb 2021-06-02T20:02:13,160 copying pysb/__init__.py -> build/lib/pysb 2021-06-02T20:02:13,162 copying pysb/macros.py -> build/lib/pysb 2021-06-02T20:02:13,167 copying pysb/pattern.py -> build/lib/pysb 2021-06-02T20:02:13,170 copying pysb/_version.py -> build/lib/pysb 2021-06-02T20:02:13,172 copying pysb/bng.py -> build/lib/pysb 2021-06-02T20:02:13,175 copying pysb/jacobian.py -> build/lib/pysb 2021-06-02T20:02:13,178 copying pysb/kappa.py -> build/lib/pysb 2021-06-02T20:02:13,181 copying pysb/annotation.py -> build/lib/pysb 2021-06-02T20:02:13,183 copying pysb/util.py -> build/lib/pysb 2021-06-02T20:02:13,186 copying pysb/core.py -> build/lib/pysb 2021-06-02T20:02:13,192 copying pysb/logging.py -> build/lib/pysb 2021-06-02T20:02:13,195 copying pysb/anneal_mod.py -> build/lib/pysb 2021-06-02T20:02:13,198 copying pysb/pathfinder.py -> build/lib/pysb 2021-06-02T20:02:13,201 copying pysb/builder.py -> build/lib/pysb 2021-06-02T20:02:13,204 copying pysb/integrate.py -> build/lib/pysb 2021-06-02T20:02:13,207 creating build/lib/pysb/generator 2021-06-02T20:02:13,208 copying pysb/generator/__init__.py -> build/lib/pysb/generator 2021-06-02T20:02:13,210 copying pysb/generator/bng.py -> build/lib/pysb/generator 2021-06-02T20:02:13,213 copying pysb/generator/kappa.py -> build/lib/pysb/generator 2021-06-02T20:02:13,217 creating build/lib/pysb/importers 2021-06-02T20:02:13,218 copying pysb/importers/__init__.py -> build/lib/pysb/importers 2021-06-02T20:02:13,220 copying pysb/importers/json.py -> build/lib/pysb/importers 2021-06-02T20:02:13,223 copying pysb/importers/bngl.py -> build/lib/pysb/importers 2021-06-02T20:02:13,226 copying pysb/importers/sbml.py -> build/lib/pysb/importers 2021-06-02T20:02:13,230 creating build/lib/pysb/tools 2021-06-02T20:02:13,231 copying pysb/tools/render_species.py -> build/lib/pysb/tools 2021-06-02T20:02:13,234 copying pysb/tools/__init__.py -> build/lib/pysb/tools 2021-06-02T20:02:13,236 copying pysb/tools/sensitivity_analysis.py -> build/lib/pysb/tools 2021-06-02T20:02:13,239 copying pysb/tools/species_graph.py -> build/lib/pysb/tools 2021-06-02T20:02:13,241 copying pysb/tools/render_reactions.py -> build/lib/pysb/tools 2021-06-02T20:02:13,246 creating build/lib/pysb/examples 2021-06-02T20:02:13,247 copying pysb/examples/run_earm_1_0.py -> build/lib/pysb/examples 2021-06-02T20:02:13,250 copying pysb/examples/tutorial_c.py -> build/lib/pysb/examples 2021-06-02T20:02:13,252 copying pysb/examples/localfunc.py -> build/lib/pysb/examples 2021-06-02T20:02:13,254 copying pysb/examples/__init__.py -> build/lib/pysb/examples 2021-06-02T20:02:13,256 copying pysb/examples/kinase_cascade.py -> build/lib/pysb/examples 2021-06-02T20:02:13,258 copying pysb/examples/expression_observables.py -> build/lib/pysb/examples 2021-06-02T20:02:13,261 copying pysb/examples/fricker_2010_apoptosis.py -> build/lib/pysb/examples 2021-06-02T20:02:13,264 copying pysb/examples/run_bng_ssa_example.py -> build/lib/pysb/examples 2021-06-02T20:02:13,266 copying pysb/examples/bax_pore_sequential.py -> build/lib/pysb/examples 2021-06-02T20:02:13,268 copying pysb/examples/run_earm_hpp.py -> build/lib/pysb/examples 2021-06-02T20:02:13,271 copying pysb/examples/move_connected.py -> build/lib/pysb/examples 2021-06-02T20:02:13,273 copying pysb/examples/hello_pysb.py -> build/lib/pysb/examples 2021-06-02T20:02:13,275 copying pysb/examples/run_bax_pore_sequential.py -> build/lib/pysb/examples 2021-06-02T20:02:13,278 copying pysb/examples/run_bax_pore.py -> build/lib/pysb/examples 2021-06-02T20:02:13,280 copying pysb/examples/run_tyson_oscillator_stochkit.py -> build/lib/pysb/examples 2021-06-02T20:02:13,283 copying pysb/examples/run_tutorial_a.py -> build/lib/pysb/examples 2021-06-02T20:02:13,285 copying pysb/examples/run_fixed_initial.py -> build/lib/pysb/examples 2021-06-02T20:02:13,287 copying pysb/examples/michment.py -> build/lib/pysb/examples 2021-06-02T20:02:13,290 copying pysb/examples/earm_1_3.py -> build/lib/pysb/examples 2021-06-02T20:02:13,292 copying pysb/examples/tutorial_a.py -> build/lib/pysb/examples 2021-06-02T20:02:13,295 copying pysb/examples/bax_pore.py -> build/lib/pysb/examples 2021-06-02T20:02:13,297 copying pysb/examples/run_tyson_oscillator.py -> build/lib/pysb/examples 2021-06-02T20:02:13,300 copying pysb/examples/explicit.py -> build/lib/pysb/examples 2021-06-02T20:02:13,302 copying pysb/examples/bngwiki_enzymatic_cycle_mm.py -> build/lib/pysb/examples 2021-06-02T20:02:13,304 copying pysb/examples/run_robertson.py -> build/lib/pysb/examples 2021-06-02T20:02:13,306 copying pysb/examples/synth_deg.py -> build/lib/pysb/examples 2021-06-02T20:02:13,309 copying pysb/examples/run_earm_stochkit.py -> build/lib/pysb/examples 2021-06-02T20:02:13,311 copying pysb/examples/bngwiki_egfr_simple.py -> build/lib/pysb/examples 2021-06-02T20:02:13,314 copying pysb/examples/run_kinase_cascade.py -> build/lib/pysb/examples 2021-06-02T20:02:13,316 copying pysb/examples/bngwiki_simple.py -> build/lib/pysb/examples 2021-06-02T20:02:13,318 copying pysb/examples/earm_1_0.py -> build/lib/pysb/examples 2021-06-02T20:02:13,321 copying pysb/examples/run_michment.py -> build/lib/pysb/examples 2021-06-02T20:02:13,324 copying pysb/examples/tyson_oscillator.py -> build/lib/pysb/examples 2021-06-02T20:02:13,327 copying pysb/examples/robertson.py -> build/lib/pysb/examples 2021-06-02T20:02:13,329 copying pysb/examples/fixed_initial.py -> build/lib/pysb/examples 2021-06-02T20:02:13,331 copying pysb/examples/tutorial_b.py -> build/lib/pysb/examples 2021-06-02T20:02:13,336 creating build/lib/pysb/export 2021-06-02T20:02:13,337 copying pysb/export/__main__.py -> build/lib/pysb/export 2021-06-02T20:02:13,339 copying pysb/export/__init__.py -> build/lib/pysb/export 2021-06-02T20:02:13,342 copying pysb/export/pysb_flat.py -> build/lib/pysb/export 2021-06-02T20:02:13,345 copying pysb/export/potterswheel.py -> build/lib/pysb/export 2021-06-02T20:02:13,348 copying pysb/export/stochkit.py -> build/lib/pysb/export 2021-06-02T20:02:13,351 copying pysb/export/mathematica.py -> build/lib/pysb/export 2021-06-02T20:02:13,354 copying pysb/export/kappa.py -> build/lib/pysb/export 2021-06-02T20:02:13,356 copying pysb/export/matlab.py -> build/lib/pysb/export 2021-06-02T20:02:13,359 copying pysb/export/json.py -> build/lib/pysb/export 2021-06-02T20:02:13,362 copying pysb/export/bngl.py -> build/lib/pysb/export 2021-06-02T20:02:13,365 copying pysb/export/sbml.py -> build/lib/pysb/export 2021-06-02T20:02:13,368 copying pysb/export/bng_net.py -> build/lib/pysb/export 2021-06-02T20:02:13,372 creating build/lib/pysb/simulator 2021-06-02T20:02:13,373 copying pysb/simulator/scipyode.py -> build/lib/pysb/simulator 2021-06-02T20:02:13,377 copying pysb/simulator/__init__.py -> build/lib/pysb/simulator 2021-06-02T20:02:13,379 copying pysb/simulator/stochkit.py -> build/lib/pysb/simulator 2021-06-02T20:02:13,383 copying pysb/simulator/bng.py -> build/lib/pysb/simulator 2021-06-02T20:02:13,386 copying pysb/simulator/kappa.py -> build/lib/pysb/simulator 2021-06-02T20:02:13,389 copying pysb/simulator/cupsoda.py -> build/lib/pysb/simulator 2021-06-02T20:02:13,392 copying pysb/simulator/base.py -> build/lib/pysb/simulator 2021-06-02T20:02:13,397 creating build/lib/pysb/testing 2021-06-02T20:02:13,399 copying pysb/testing/__init__.py -> build/lib/pysb/testing 2021-06-02T20:02:13,401 copying pysb/testing/modeltests.py -> build/lib/pysb/testing 2021-06-02T20:02:13,406 creating build/lib/pysb/tests 2021-06-02T20:02:13,408 copying pysb/tests/test_bng.py -> build/lib/pysb/tests 2021-06-02T20:02:13,411 copying pysb/tests/test_simulator_bng.py -> build/lib/pysb/tests 2021-06-02T20:02:13,414 copying pysb/tests/test_util.py -> build/lib/pysb/tests 2021-06-02T20:02:13,417 copying pysb/tests/__init__.py -> build/lib/pysb/tests 2021-06-02T20:02:13,419 copying pysb/tests/test_sensitivity_analysis.py -> build/lib/pysb/tests 2021-06-02T20:02:13,422 copying pysb/tests/test_integrate.py -> build/lib/pysb/tests 2021-06-02T20:02:13,425 copying pysb/tests/test_macros.py -> build/lib/pysb/tests 2021-06-02T20:02:13,427 copying pysb/tests/test_simulationresult.py -> build/lib/pysb/tests 2021-06-02T20:02:13,430 copying pysb/tests/jacobian_runtimes.py -> build/lib/pysb/tests 2021-06-02T20:02:13,432 copying pysb/tests/test_examples.py -> build/lib/pysb/tests 2021-06-02T20:02:13,435 copying pysb/tests/test_pattern.py -> build/lib/pysb/tests 2021-06-02T20:02:13,438 copying pysb/tests/test_simulator_cupsoda.py -> build/lib/pysb/tests 2021-06-02T20:02:13,441 copying pysb/tests/test_importers.py -> build/lib/pysb/tests 2021-06-02T20:02:13,443 copying pysb/tests/test_kappa.py -> build/lib/pysb/tests 2021-06-02T20:02:13,446 copying pysb/tests/test_exporters.py -> build/lib/pysb/tests 2021-06-02T20:02:13,449 copying pysb/tests/test_core.py -> build/lib/pysb/tests 2021-06-02T20:02:13,452 copying pysb/tests/test_simulator_kappa.py -> build/lib/pysb/tests 2021-06-02T20:02:13,455 copying pysb/tests/test_expressions.py -> build/lib/pysb/tests 2021-06-02T20:02:13,458 copying pysb/tests/test_simulator_stochkit.py -> build/lib/pysb/tests 2021-06-02T20:02:13,460 copying pysb/tests/test_simulator_scipy.py -> build/lib/pysb/tests 2021-06-02T20:02:13,476 UPDATING build/lib/pysb/_version.py 2021-06-02T20:02:13,478 set build/lib/pysb/_version.py to '1.13.0' 2021-06-02T20:02:13,478 running build_scripts 2021-06-02T20:02:13,478 creating build/scripts-3.7 2021-06-02T20:02:13,480 copying and adjusting scripts/pysb_export -> build/scripts-3.7 2021-06-02T20:02:13,481 changing mode of build/scripts-3.7/pysb_export from 644 to 755 2021-06-02T20:02:13,486 installing to build/bdist.linux-armv7l/wheel 2021-06-02T20:02:13,486 running install 2021-06-02T20:02:13,487 running install_lib 2021-06-02T20:02:13,491 creating build/bdist.linux-armv7l 2021-06-02T20:02:13,492 creating build/bdist.linux-armv7l/wheel 2021-06-02T20:02:13,495 creating build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,496 copying build/lib/pysb/__init__.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,498 copying build/lib/pysb/macros.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,505 creating build/bdist.linux-armv7l/wheel/pysb/importers 2021-06-02T20:02:13,506 copying build/lib/pysb/importers/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/importers 2021-06-02T20:02:13,508 copying build/lib/pysb/importers/json.py -> build/bdist.linux-armv7l/wheel/pysb/importers 2021-06-02T20:02:13,511 copying build/lib/pysb/importers/bngl.py -> build/bdist.linux-armv7l/wheel/pysb/importers 2021-06-02T20:02:13,514 copying build/lib/pysb/importers/sbml.py -> build/bdist.linux-armv7l/wheel/pysb/importers 2021-06-02T20:02:13,517 copying build/lib/pysb/pattern.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,523 creating build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,524 copying build/lib/pysb/examples/run_earm_1_0.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,527 copying build/lib/pysb/examples/tutorial_c.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,529 copying build/lib/pysb/examples/localfunc.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,532 copying build/lib/pysb/examples/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,534 copying build/lib/pysb/examples/kinase_cascade.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,537 copying build/lib/pysb/examples/expression_observables.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,539 copying build/lib/pysb/examples/fricker_2010_apoptosis.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,543 copying build/lib/pysb/examples/run_bng_ssa_example.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,545 copying build/lib/pysb/examples/bax_pore_sequential.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,548 copying build/lib/pysb/examples/run_earm_hpp.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,551 copying build/lib/pysb/examples/move_connected.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,554 copying build/lib/pysb/examples/hello_pysb.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,556 copying build/lib/pysb/examples/run_bax_pore_sequential.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,559 copying build/lib/pysb/examples/run_bax_pore.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,562 copying build/lib/pysb/examples/run_tyson_oscillator_stochkit.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,564 copying build/lib/pysb/examples/run_tutorial_a.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,567 copying build/lib/pysb/examples/run_fixed_initial.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,570 copying build/lib/pysb/examples/michment.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,573 copying build/lib/pysb/examples/earm_1_3.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,576 copying build/lib/pysb/examples/tutorial_a.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,579 copying build/lib/pysb/examples/bax_pore.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,581 copying build/lib/pysb/examples/run_tyson_oscillator.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,584 copying build/lib/pysb/examples/explicit.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,587 copying build/lib/pysb/examples/bngwiki_enzymatic_cycle_mm.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,590 copying build/lib/pysb/examples/run_robertson.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,592 copying build/lib/pysb/examples/synth_deg.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,595 copying build/lib/pysb/examples/run_earm_stochkit.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,597 copying build/lib/pysb/examples/bngwiki_egfr_simple.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,600 copying build/lib/pysb/examples/run_kinase_cascade.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,602 copying build/lib/pysb/examples/bngwiki_simple.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,605 copying build/lib/pysb/examples/earm_1_0.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,608 copying build/lib/pysb/examples/run_michment.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,611 copying build/lib/pysb/examples/tyson_oscillator.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,613 copying build/lib/pysb/examples/robertson.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,616 copying build/lib/pysb/examples/fixed_initial.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,619 copying build/lib/pysb/examples/tutorial_b.py -> build/bdist.linux-armv7l/wheel/pysb/examples 2021-06-02T20:02:13,621 copying build/lib/pysb/_version.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,624 copying build/lib/pysb/bng.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,629 creating build/bdist.linux-armv7l/wheel/pysb/tools 2021-06-02T20:02:13,630 copying build/lib/pysb/tools/render_species.py -> build/bdist.linux-armv7l/wheel/pysb/tools 2021-06-02T20:02:13,633 copying build/lib/pysb/tools/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/tools 2021-06-02T20:02:13,636 copying build/lib/pysb/tools/sensitivity_analysis.py -> build/bdist.linux-armv7l/wheel/pysb/tools 2021-06-02T20:02:13,639 copying build/lib/pysb/tools/species_graph.py -> build/bdist.linux-armv7l/wheel/pysb/tools 2021-06-02T20:02:13,642 copying build/lib/pysb/tools/render_reactions.py -> build/bdist.linux-armv7l/wheel/pysb/tools 2021-06-02T20:02:13,645 copying build/lib/pysb/jacobian.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,648 copying build/lib/pysb/kappa.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,651 copying build/lib/pysb/annotation.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,655 creating build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,656 copying build/lib/pysb/simulator/scipyode.py -> build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,660 copying build/lib/pysb/simulator/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,663 copying build/lib/pysb/simulator/stochkit.py -> build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,666 copying build/lib/pysb/simulator/bng.py -> build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,669 copying build/lib/pysb/simulator/kappa.py -> build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,672 copying build/lib/pysb/simulator/cupsoda.py -> build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,676 copying build/lib/pysb/simulator/base.py -> build/bdist.linux-armv7l/wheel/pysb/simulator 2021-06-02T20:02:13,682 creating build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,683 copying build/lib/pysb/export/__main__.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,686 copying build/lib/pysb/export/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,689 copying build/lib/pysb/export/pysb_flat.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,692 copying build/lib/pysb/export/potterswheel.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,694 copying build/lib/pysb/export/stochkit.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,698 copying build/lib/pysb/export/mathematica.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,701 copying build/lib/pysb/export/kappa.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,703 copying build/lib/pysb/export/matlab.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,707 copying build/lib/pysb/export/json.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,710 copying build/lib/pysb/export/bngl.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,712 copying build/lib/pysb/export/sbml.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,715 copying build/lib/pysb/export/bng_net.py -> build/bdist.linux-armv7l/wheel/pysb/export 2021-06-02T20:02:13,718 copying build/lib/pysb/util.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,721 creating build/bdist.linux-armv7l/wheel/pysb/testing 2021-06-02T20:02:13,722 copying build/lib/pysb/testing/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/testing 2021-06-02T20:02:13,725 copying build/lib/pysb/testing/modeltests.py -> build/bdist.linux-armv7l/wheel/pysb/testing 2021-06-02T20:02:13,728 copying build/lib/pysb/core.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,735 creating build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,736 copying build/lib/pysb/tests/test_bng.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,739 copying build/lib/pysb/tests/test_simulator_bng.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,742 copying build/lib/pysb/tests/test_util.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,745 copying build/lib/pysb/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,747 copying build/lib/pysb/tests/test_sensitivity_analysis.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,750 copying build/lib/pysb/tests/test_integrate.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,753 copying build/lib/pysb/tests/test_macros.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,755 copying build/lib/pysb/tests/test_simulationresult.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,759 copying build/lib/pysb/tests/jacobian_runtimes.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,761 copying build/lib/pysb/tests/test_examples.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,763 copying build/lib/pysb/tests/test_pattern.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,766 copying build/lib/pysb/tests/test_simulator_cupsoda.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,769 copying build/lib/pysb/tests/test_importers.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,771 copying build/lib/pysb/tests/test_kappa.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,774 copying build/lib/pysb/tests/test_exporters.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,777 copying build/lib/pysb/tests/test_core.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,780 copying build/lib/pysb/tests/test_simulator_kappa.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,783 copying build/lib/pysb/tests/test_expressions.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,785 copying build/lib/pysb/tests/test_simulator_stochkit.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,787 copying build/lib/pysb/tests/test_simulator_scipy.py -> build/bdist.linux-armv7l/wheel/pysb/tests 2021-06-02T20:02:13,791 copying build/lib/pysb/logging.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,794 copying build/lib/pysb/anneal_mod.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,796 copying build/lib/pysb/pathfinder.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,799 copying build/lib/pysb/builder.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,803 creating build/bdist.linux-armv7l/wheel/pysb/generator 2021-06-02T20:02:13,804 copying build/lib/pysb/generator/__init__.py -> build/bdist.linux-armv7l/wheel/pysb/generator 2021-06-02T20:02:13,806 copying build/lib/pysb/generator/bng.py -> build/bdist.linux-armv7l/wheel/pysb/generator 2021-06-02T20:02:13,809 copying build/lib/pysb/generator/kappa.py -> build/bdist.linux-armv7l/wheel/pysb/generator 2021-06-02T20:02:13,812 copying build/lib/pysb/integrate.py -> build/bdist.linux-armv7l/wheel/pysb 2021-06-02T20:02:13,815 running install_egg_info 2021-06-02T20:02:13,828 running egg_info 2021-06-02T20:02:13,828 writing pysb.egg-info/PKG-INFO 2021-06-02T20:02:13,830 writing dependency_links to pysb.egg-info/dependency_links.txt 2021-06-02T20:02:13,832 writing requirements to pysb.egg-info/requires.txt 2021-06-02T20:02:13,834 writing top-level names to pysb.egg-info/top_level.txt 2021-06-02T20:02:13,849 adding license file 'LICENSE.txt' (matched pattern 'LICEN[CS]E*') 2021-06-02T20:02:13,852 reading manifest file 'pysb.egg-info/SOURCES.txt' 2021-06-02T20:02:13,858 reading manifest template 'MANIFEST.in' 2021-06-02T20:02:13,864 no previously-included directories found matching 'doc/_build' 2021-06-02T20:02:13,874 writing manifest file 'pysb.egg-info/SOURCES.txt' 2021-06-02T20:02:13,876 Copying pysb.egg-info to build/bdist.linux-armv7l/wheel/pysb-1.13.0-py3.7.egg-info 2021-06-02T20:02:13,888 running install_scripts 2021-06-02T20:02:13,917 creating build/bdist.linux-armv7l/wheel/pysb-1.13.0.data 2021-06-02T20:02:13,917 creating build/bdist.linux-armv7l/wheel/pysb-1.13.0.data/scripts 2021-06-02T20:02:13,918 copying build/scripts-3.7/pysb_export -> build/bdist.linux-armv7l/wheel/pysb-1.13.0.data/scripts 2021-06-02T20:02:13,920 changing mode of build/bdist.linux-armv7l/wheel/pysb-1.13.0.data/scripts/pysb_export to 755 2021-06-02T20:02:13,944 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-06-02T20:02:13,949 creating build/bdist.linux-armv7l/wheel/pysb-1.13.0.dist-info/WHEEL 2021-06-02T20:02:13,952 creating '/tmp/pip-wheel-uvn82da4/pysb-1.13.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-06-02T20:02:13,956 adding 'pysb/__init__.py' 2021-06-02T20:02:13,957 adding 'pysb/_version.py' 2021-06-02T20:02:13,959 adding 'pysb/anneal_mod.py' 2021-06-02T20:02:13,961 adding 'pysb/annotation.py' 2021-06-02T20:02:13,967 adding 'pysb/bng.py' 2021-06-02T20:02:13,969 adding 'pysb/builder.py' 2021-06-02T20:02:13,985 adding 'pysb/core.py' 2021-06-02T20:02:13,987 adding 'pysb/integrate.py' 2021-06-02T20:02:13,989 adding 'pysb/jacobian.py' 2021-06-02T20:02:13,992 adding 'pysb/kappa.py' 2021-06-02T20:02:13,994 adding 'pysb/logging.py' 2021-06-02T20:02:14,005 adding 'pysb/macros.py' 2021-06-02T20:02:14,007 adding 'pysb/pathfinder.py' 2021-06-02T20:02:14,012 adding 'pysb/pattern.py' 2021-06-02T20:02:14,014 adding 'pysb/util.py' 2021-06-02T20:02:14,017 adding 'pysb/examples/__init__.py' 2021-06-02T20:02:14,018 adding 'pysb/examples/bax_pore.py' 2021-06-02T20:02:14,020 adding 'pysb/examples/bax_pore_sequential.py' 2021-06-02T20:02:14,021 adding 'pysb/examples/bngwiki_egfr_simple.py' 2021-06-02T20:02:14,022 adding 'pysb/examples/bngwiki_enzymatic_cycle_mm.py' 2021-06-02T20:02:14,024 adding 'pysb/examples/bngwiki_simple.py' 2021-06-02T20:02:14,026 adding 'pysb/examples/earm_1_0.py' 2021-06-02T20:02:14,027 adding 'pysb/examples/earm_1_3.py' 2021-06-02T20:02:14,029 adding 'pysb/examples/explicit.py' 2021-06-02T20:02:14,030 adding 'pysb/examples/expression_observables.py' 2021-06-02T20:02:14,031 adding 'pysb/examples/fixed_initial.py' 2021-06-02T20:02:14,033 adding 'pysb/examples/fricker_2010_apoptosis.py' 2021-06-02T20:02:14,035 adding 'pysb/examples/hello_pysb.py' 2021-06-02T20:02:14,036 adding 'pysb/examples/kinase_cascade.py' 2021-06-02T20:02:14,038 adding 'pysb/examples/localfunc.py' 2021-06-02T20:02:14,039 adding 'pysb/examples/michment.py' 2021-06-02T20:02:14,040 adding 'pysb/examples/move_connected.py' 2021-06-02T20:02:14,042 adding 'pysb/examples/robertson.py' 2021-06-02T20:02:14,043 adding 'pysb/examples/run_bax_pore.py' 2021-06-02T20:02:14,044 adding 'pysb/examples/run_bax_pore_sequential.py' 2021-06-02T20:02:14,046 adding 'pysb/examples/run_bng_ssa_example.py' 2021-06-02T20:02:14,047 adding 'pysb/examples/run_earm_1_0.py' 2021-06-02T20:02:14,049 adding 'pysb/examples/run_earm_hpp.py' 2021-06-02T20:02:14,050 adding 'pysb/examples/run_earm_stochkit.py' 2021-06-02T20:02:14,051 adding 'pysb/examples/run_fixed_initial.py' 2021-06-02T20:02:14,052 adding 'pysb/examples/run_kinase_cascade.py' 2021-06-02T20:02:14,054 adding 'pysb/examples/run_michment.py' 2021-06-02T20:02:14,055 adding 'pysb/examples/run_robertson.py' 2021-06-02T20:02:14,056 adding 'pysb/examples/run_tutorial_a.py' 2021-06-02T20:02:14,057 adding 'pysb/examples/run_tyson_oscillator.py' 2021-06-02T20:02:14,059 adding 'pysb/examples/run_tyson_oscillator_stochkit.py' 2021-06-02T20:02:14,060 adding 'pysb/examples/synth_deg.py' 2021-06-02T20:02:14,061 adding 'pysb/examples/tutorial_a.py' 2021-06-02T20:02:14,062 adding 'pysb/examples/tutorial_b.py' 2021-06-02T20:02:14,064 adding 'pysb/examples/tutorial_c.py' 2021-06-02T20:02:14,065 adding 'pysb/examples/tyson_oscillator.py' 2021-06-02T20:02:14,068 adding 'pysb/export/__init__.py' 2021-06-02T20:02:14,069 adding 'pysb/export/__main__.py' 2021-06-02T20:02:14,070 adding 'pysb/export/bng_net.py' 2021-06-02T20:02:14,072 adding 'pysb/export/bngl.py' 2021-06-02T20:02:14,074 adding 'pysb/export/json.py' 2021-06-02T20:02:14,075 adding 'pysb/export/kappa.py' 2021-06-02T20:02:14,077 adding 'pysb/export/mathematica.py' 2021-06-02T20:02:14,080 adding 'pysb/export/matlab.py' 2021-06-02T20:02:14,082 adding 'pysb/export/potterswheel.py' 2021-06-02T20:02:14,083 adding 'pysb/export/pysb_flat.py' 2021-06-02T20:02:14,085 adding 'pysb/export/sbml.py' 2021-06-02T20:02:14,087 adding 'pysb/export/stochkit.py' 2021-06-02T20:02:14,089 adding 'pysb/generator/__init__.py' 2021-06-02T20:02:14,092 adding 'pysb/generator/bng.py' 2021-06-02T20:02:14,094 adding 'pysb/generator/kappa.py' 2021-06-02T20:02:14,096 adding 'pysb/importers/__init__.py' 2021-06-02T20:02:14,099 adding 'pysb/importers/bngl.py' 2021-06-02T20:02:14,101 adding 'pysb/importers/json.py' 2021-06-02T20:02:14,103 adding 'pysb/importers/sbml.py' 2021-06-02T20:02:14,106 adding 'pysb/simulator/__init__.py' 2021-06-02T20:02:14,113 adding 'pysb/simulator/base.py' 2021-06-02T20:02:14,116 adding 'pysb/simulator/bng.py' 2021-06-02T20:02:14,120 adding 'pysb/simulator/cupsoda.py' 2021-06-02T20:02:14,122 adding 'pysb/simulator/kappa.py' 2021-06-02T20:02:14,126 adding 'pysb/simulator/scipyode.py' 2021-06-02T20:02:14,128 adding 'pysb/simulator/stochkit.py' 2021-06-02T20:02:14,131 adding 'pysb/testing/__init__.py' 2021-06-02T20:02:14,133 adding 'pysb/testing/modeltests.py' 2021-06-02T20:02:14,135 adding 'pysb/tests/__init__.py' 2021-06-02T20:02:14,136 adding 'pysb/tests/jacobian_runtimes.py' 2021-06-02T20:02:14,138 adding 'pysb/tests/test_bng.py' 2021-06-02T20:02:14,141 adding 'pysb/tests/test_core.py' 2021-06-02T20:02:14,142 adding 'pysb/tests/test_examples.py' 2021-06-02T20:02:14,144 adding 'pysb/tests/test_exporters.py' 2021-06-02T20:02:14,145 adding 'pysb/tests/test_expressions.py' 2021-06-02T20:02:14,147 adding 'pysb/tests/test_importers.py' 2021-06-02T20:02:14,148 adding 'pysb/tests/test_integrate.py' 2021-06-02T20:02:14,150 adding 'pysb/tests/test_kappa.py' 2021-06-02T20:02:14,151 adding 'pysb/tests/test_macros.py' 2021-06-02T20:02:14,153 adding 'pysb/tests/test_pattern.py' 2021-06-02T20:02:14,154 adding 'pysb/tests/test_sensitivity_analysis.py' 2021-06-02T20:02:14,156 adding 'pysb/tests/test_simulationresult.py' 2021-06-02T20:02:14,158 adding 'pysb/tests/test_simulator_bng.py' 2021-06-02T20:02:14,159 adding 'pysb/tests/test_simulator_cupsoda.py' 2021-06-02T20:02:14,160 adding 'pysb/tests/test_simulator_kappa.py' 2021-06-02T20:02:14,163 adding 'pysb/tests/test_simulator_scipy.py' 2021-06-02T20:02:14,165 adding 'pysb/tests/test_simulator_stochkit.py' 2021-06-02T20:02:14,166 adding 'pysb/tests/test_util.py' 2021-06-02T20:02:14,168 adding 'pysb/tools/__init__.py' 2021-06-02T20:02:14,170 adding 'pysb/tools/render_reactions.py' 2021-06-02T20:02:14,171 adding 'pysb/tools/render_species.py' 2021-06-02T20:02:14,175 adding 'pysb/tools/sensitivity_analysis.py' 2021-06-02T20:02:14,177 adding 'pysb/tools/species_graph.py' 2021-06-02T20:02:14,179 adding 'pysb-1.13.0.data/scripts/pysb_export' 2021-06-02T20:02:14,182 adding 'pysb-1.13.0.dist-info/LICENSE.txt' 2021-06-02T20:02:14,183 adding 'pysb-1.13.0.dist-info/METADATA' 2021-06-02T20:02:14,184 adding 'pysb-1.13.0.dist-info/WHEEL' 2021-06-02T20:02:14,185 adding 'pysb-1.13.0.dist-info/top_level.txt' 2021-06-02T20:02:14,186 adding 'pysb-1.13.0.dist-info/RECORD' 2021-06-02T20:02:14,194 removing build/bdist.linux-armv7l/wheel 2021-06-02T20:02:14,307 Building wheel for pysb (setup.py): finished with status 'done' 2021-06-02T20:02:14,312 Created wheel for pysb: filename=pysb-1.13.0-py3-none-any.whl size=260103 sha256=d5bc587f9f42b086e5723279b9779a155d2d9a0f1c24b9da17c5227b62f70558 2021-06-02T20:02:14,312 Stored in directory: /tmp/pip-ephem-wheel-cache-4mmnc3rg/wheels/53/50/0c/b72aaf22f050f697893b3130f9e5b0b0f607a5abbd2065099f 2021-06-02T20:02:14,325 Successfully built pysb 2021-06-02T20:02:14,341 Removed build tracker: '/tmp/pip-req-tracker-uno4aju_'