2021-06-05T15:21:20,923 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-06-05T15:21:21,606 Created temporary directory: /tmp/pip-ephem-wheel-cache-2k8h1ya1
2021-06-05T15:21:21,611 Created temporary directory: /tmp/pip-req-tracker-shub6osc
2021-06-05T15:21:21,612 Initialized build tracking at /tmp/pip-req-tracker-shub6osc
2021-06-05T15:21:21,612 Created build tracker: /tmp/pip-req-tracker-shub6osc
2021-06-05T15:21:21,613 Entered build tracker: /tmp/pip-req-tracker-shub6osc
2021-06-05T15:21:21,614 Created temporary directory: /tmp/pip-wheel-rm2co8q_
2021-06-05T15:21:21,689 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2021-06-05T15:21:21,694 2 location(s) to search for versions of apples:
2021-06-05T15:21:21,694 * https://pypi.org/simple/apples/
2021-06-05T15:21:21,694 * https://pypi.ngc.nvidia.com/apples/
2021-06-05T15:21:21,695 Fetching project page and analyzing links: https://pypi.org/simple/apples/
2021-06-05T15:21:21,697 Getting page https://pypi.org/simple/apples/
2021-06-05T15:21:21,701 Found index url https://pypi.org/simple
2021-06-05T15:21:22,028   Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1
2021-06-05T15:21:22,029   Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3
2021-06-05T15:21:22,030   Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4
2021-06-05T15:21:22,031   Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0
2021-06-05T15:21:22,032   Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0
2021-06-05T15:21:22,033   Found link https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df (from https://pypi.org/simple/apples/), version: 2.0.1
2021-06-05T15:21:22,034   Found link https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 (from https://pypi.org/simple/apples/), version: 2.0.2
2021-06-05T15:21:22,035   Found link https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd (from https://pypi.org/simple/apples/), version: 2.0.3
2021-06-05T15:21:22,036 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/apples/
2021-06-05T15:21:22,036 Getting page https://pypi.ngc.nvidia.com/apples/
2021-06-05T15:21:22,039 Found index url https://pypi.ngc.nvidia.com
2021-06-05T15:21:22,985 Could not fetch URL https://pypi.ngc.nvidia.com/apples/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/apples/ - skipping
2021-06-05T15:21:23,029 Given no hashes to check 1 links for project 'apples': discarding no candidates
2021-06-05T15:21:23,061 Collecting apples==2.0.3
2021-06-05T15:21:23,065   Created temporary directory: /tmp/pip-unpack-1m_st129
2021-06-05T15:21:23,501   Downloading apples-2.0.3.tar.gz (757 kB)
2021-06-05T15:21:24,192   Added apples==2.0.3 from https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd to build tracker '/tmp/pip-req-tracker-shub6osc'
2021-06-05T15:21:24,195     Running setup.py (path:/tmp/pip-wheel-rm2co8q_/apples_d4daa6f646c94cfca8a08f1e6dabefb3/setup.py) egg_info for package apples
2021-06-05T15:21:24,198     Created temporary directory: /tmp/pip-pip-egg-info-9biqrala
2021-06-05T15:21:24,199     Running command python setup.py egg_info
2021-06-05T15:21:26,408     running egg_info
2021-06-05T15:21:26,413     creating /tmp/pip-pip-egg-info-9biqrala/apples.egg-info
2021-06-05T15:21:26,417     writing requirements to /tmp/pip-pip-egg-info-9biqrala/apples.egg-info/requires.txt
2021-06-05T15:21:26,420     writing top-level names to /tmp/pip-pip-egg-info-9biqrala/apples.egg-info/top_level.txt
2021-06-05T15:21:26,423     writing dependency_links to /tmp/pip-pip-egg-info-9biqrala/apples.egg-info/dependency_links.txt
2021-06-05T15:21:26,425     writing /tmp/pip-pip-egg-info-9biqrala/apples.egg-info/PKG-INFO
2021-06-05T15:21:26,433     writing manifest file '/tmp/pip-pip-egg-info-9biqrala/apples.egg-info/SOURCES.txt'
2021-06-05T15:21:26,806     reading manifest file '/tmp/pip-pip-egg-info-9biqrala/apples.egg-info/SOURCES.txt'
2021-06-05T15:21:26,809     reading manifest template 'MANIFEST.in'
2021-06-05T15:21:26,823     writing manifest file '/tmp/pip-pip-egg-info-9biqrala/apples.egg-info/SOURCES.txt'
2021-06-05T15:21:26,956   Source in /tmp/pip-wheel-rm2co8q_/apples_d4daa6f646c94cfca8a08f1e6dabefb3 has version 2.0.3, which satisfies requirement apples==2.0.3 from https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd
2021-06-05T15:21:26,958   Removed apples==2.0.3 from https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd from build tracker '/tmp/pip-req-tracker-shub6osc'
2021-06-05T15:21:26,966 Created temporary directory: /tmp/pip-unpack-4yovppt_
2021-06-05T15:21:26,967 Building wheels for collected packages: apples
2021-06-05T15:21:26,976   Created temporary directory: /tmp/pip-wheel-yzf0ugrs
2021-06-05T15:21:26,977   Building wheel for apples (setup.py): started
2021-06-05T15:21:26,978   Destination directory: /tmp/pip-wheel-yzf0ugrs
2021-06-05T15:21:26,978   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rm2co8q_/apples_d4daa6f646c94cfca8a08f1e6dabefb3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rm2co8q_/apples_d4daa6f646c94cfca8a08f1e6dabefb3/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-yzf0ugrs
2021-06-05T15:21:29,118   running bdist_wheel
2021-06-05T15:21:29,133   running build
2021-06-05T15:21:29,134   running build_py
2021-06-05T15:21:29,472   creating build
2021-06-05T15:21:29,473   creating build/lib
2021-06-05T15:21:29,474   creating build/lib/apples
2021-06-05T15:21:29,477   copying apples/prepareTree.py -> build/lib/apples
2021-06-05T15:21:29,482   copying apples/FM.py -> build/lib/apples
2021-06-05T15:21:29,486   copying apples/Reference.py -> build/lib/apples
2021-06-05T15:21:29,491   copying apples/reestimateBackbone.py -> build/lib/apples
2021-06-05T15:21:29,495   copying apples/Algorithm.py -> build/lib/apples
2021-06-05T15:21:29,499   copying apples/Subtree.py -> build/lib/apples
2021-06-05T15:21:29,504   copying apples/OptionsBuild.py -> build/lib/apples
2021-06-05T15:21:29,510   copying apples/BME.py -> build/lib/apples
2021-06-05T15:21:29,517   copying apples/fasta2dic.py -> build/lib/apples
2021-06-05T15:21:29,522   copying apples/util.py -> build/lib/apples
2021-06-05T15:21:29,528   copying apples/BE.py -> build/lib/apples
2021-06-05T15:21:29,534   copying apples/OptionsRun.py -> build/lib/apples
2021-06-05T15:21:29,540   copying apples/PrioritySet.py -> build/lib/apples
2021-06-05T15:21:29,545   copying apples/distance.py -> build/lib/apples
2021-06-05T15:21:29,551   copying apples/jutil.py -> build/lib/apples
2021-06-05T15:21:29,557   copying apples/OptionsBasic.py -> build/lib/apples
2021-06-05T15:21:29,564   copying apples/OLS.py -> build/lib/apples
2021-06-05T15:21:29,569   copying apples/__init__.py -> build/lib/apples
2021-06-05T15:21:29,574   copying apples/PoolRepresentativeWorker.py -> build/lib/apples
2021-06-05T15:21:29,580   copying apples/PoolQueryWorker.py -> build/lib/apples
2021-06-05T15:21:29,587   creating build/lib/apples/tools
2021-06-05T15:21:29,589   copying apples/tools/__init__.py -> build/lib/apples/tools
2021-06-05T15:21:29,593   running egg_info
2021-06-05T15:21:29,626   writing dependency_links to apples.egg-info/dependency_links.txt
2021-06-05T15:21:29,630   writing top-level names to apples.egg-info/top_level.txt
2021-06-05T15:21:29,632   writing apples.egg-info/PKG-INFO
2021-06-05T15:21:29,636   writing requirements to apples.egg-info/requires.txt
2021-06-05T15:21:29,649   reading manifest file 'apples.egg-info/SOURCES.txt'
2021-06-05T15:21:29,654   reading manifest template 'MANIFEST.in'
2021-06-05T15:21:29,668   writing manifest file 'apples.egg-info/SOURCES.txt'
2021-06-05T15:21:29,673   copying apples/tools/FastTree-darwin -> build/lib/apples/tools
2021-06-05T15:21:29,762   copying apples/tools/FastTree-linux -> build/lib/apples/tools
2021-06-05T15:21:29,806   copying apples/tools/FastTree.exe -> build/lib/apples/tools
2021-06-05T15:21:29,849   running build_scripts
2021-06-05T15:21:29,850   creating build/scripts-3.5
2021-06-05T15:21:29,854   copying and adjusting run_apples.py -> build/scripts-3.5
2021-06-05T15:21:29,860   copying and adjusting build_applesdtb.py -> build/scripts-3.5
2021-06-05T15:21:29,863   changing mode of build/scripts-3.5/run_apples.py from 644 to 755
2021-06-05T15:21:29,864   changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755
2021-06-05T15:21:29,875   installing to build/bdist.linux-armv7l/wheel
2021-06-05T15:21:29,875   running install
2021-06-05T15:21:29,877   running install_lib
2021-06-05T15:21:29,885   creating build/bdist.linux-armv7l
2021-06-05T15:21:29,886   creating build/bdist.linux-armv7l/wheel
2021-06-05T15:21:29,890   creating build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,892   copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,896   copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,901   copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,905   copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,910   copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,915   copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,920   copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,925   copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,932   copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,937   copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,943   copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,949   copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,954   copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,960   copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,967   copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,972   copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,978   copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,984   copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,989   copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:29,994   copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-05T15:21:30,002   creating build/bdist.linux-armv7l/wheel/apples/tools
2021-06-05T15:21:30,005   copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-05T15:21:30,047   copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-05T15:21:30,140   copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-05T15:21:30,144   copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-05T15:21:30,179   running install_egg_info
2021-06-05T15:21:30,197   Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.3-py3.5.egg-info
2021-06-05T15:21:30,227   running install_scripts
2021-06-05T15:21:30,369   creating build/bdist.linux-armv7l/wheel/apples-2.0.3.data
2021-06-05T15:21:30,370   creating build/bdist.linux-armv7l/wheel/apples-2.0.3.data/scripts
2021-06-05T15:21:30,373   copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.3.data/scripts
2021-06-05T15:21:30,378   copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.3.data/scripts
2021-06-05T15:21:30,382   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.3.data/scripts/run_apples.py to 755
2021-06-05T15:21:30,383   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.3.data/scripts/build_applesdtb.py to 755
2021-06-05T15:21:30,430   creating build/bdist.linux-armv7l/wheel/apples-2.0.3.dist-info/WHEEL
2021-06-05T15:21:31,286   Building wheel for apples (setup.py): finished with status 'done'
2021-06-05T15:21:31,303   Created wheel for apples: filename=apples-2.0.3-py3-none-any.whl size=765381 sha256=2aeff899d560c7f18a24ace0d942ec9c60903a681a67aed3f5e775d47d929e7a
2021-06-05T15:21:31,304   Stored in directory: /tmp/pip-ephem-wheel-cache-2k8h1ya1/wheels/36/6b/41/fc3c193c14b9479632a4a48bcdd4cfe3351f428d10588c3881
2021-06-05T15:21:31,324 Successfully built apples
2021-06-05T15:21:31,463 Removed build tracker: '/tmp/pip-req-tracker-shub6osc'