2021-06-15T13:42:12,103 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-06-15T13:42:12,677 Created temporary directory: /tmp/pip-ephem-wheel-cache-bpapcmvx
2021-06-15T13:42:12,681 Created temporary directory: /tmp/pip-req-tracker-frwwvzlv
2021-06-15T13:42:12,682 Initialized build tracking at /tmp/pip-req-tracker-frwwvzlv
2021-06-15T13:42:12,682 Created build tracker: /tmp/pip-req-tracker-frwwvzlv
2021-06-15T13:42:12,683 Entered build tracker: /tmp/pip-req-tracker-frwwvzlv
2021-06-15T13:42:12,684 Created temporary directory: /tmp/pip-wheel-smslab4x
2021-06-15T13:42:12,739 1 location(s) to search for versions of dark-matter:
2021-06-15T13:42:12,739 * https://pypi.org/simple/dark-matter/
2021-06-15T13:42:12,739 Fetching project page and analyzing links: https://pypi.org/simple/dark-matter/
2021-06-15T13:42:12,741 Getting page https://pypi.org/simple/dark-matter/
2021-06-15T13:42:12,745 Found index url https://pypi.org/simple
2021-06-15T13:42:13,371   Found link https://files.pythonhosted.org/packages/7a/5d/5704534d2e83673ec3c8534b39fe1a3f071291761d421803f6b2f04ca6b3/dark-matter-1.0.0.tar.gz#sha256=e915679610d0e94ca32b047d9ef8db6bb16aca43edbba1f7ea13d8f9a00b77d7 (from https://pypi.org/simple/dark-matter/), version: 1.0.0
2021-06-15T13:42:13,372   Found link https://files.pythonhosted.org/packages/4a/50/cc5fbbe75b550d6819af04e15ffc633d99b636f2e2d3c22ca4fc09ba2380/dark-matter-1.0.11.tar.gz#sha256=4157ac389269821b5c3a2de3b32922bf437df79e858f2ae8c7293479d393c90b (from https://pypi.org/simple/dark-matter/), version: 1.0.11
2021-06-15T13:42:13,373   Found link https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 (from https://pypi.org/simple/dark-matter/), version: 1.0.12
2021-06-15T13:42:13,374   Found link https://files.pythonhosted.org/packages/42/69/f0d13d1e43ec50d1ca85b70c27cc5333f85186668700544a7661c4d6d374/dark-matter-1.0.13.tar.gz#sha256=4b061448407711cab985c60762244028d74b32a322d7329a63138e4080d110d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.13
2021-06-15T13:42:13,375   Found link https://files.pythonhosted.org/packages/30/5a/9c56b0639b13c2c78cad8ac304e9c5d834eed0cab07d0dcd780b7be47249/dark-matter-1.0.16.tar.gz#sha256=c0c11585b9a71c47aa248794779111a9ab30c48e32e17540f95347d98ce116a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.16
2021-06-15T13:42:13,376   Found link https://files.pythonhosted.org/packages/26/8d/eb629def26e051253c4070e70dfc7c8258d513b2685fe4e92bb975b6e613/dark-matter-1.0.19.tar.gz#sha256=4944ba9c898e0b956b6a8c0b8e78e5aa91579ac469885c61e70d71e89f92883d (from https://pypi.org/simple/dark-matter/), version: 1.0.19
2021-06-15T13:42:13,376   Found link https://files.pythonhosted.org/packages/6d/6f/755f4b72e91ce15571d5884761d34627eba8dc173005bc8d41a2e4d2ec81/dark-matter-1.0.27.tar.gz#sha256=70b765fdc0932137cb1ee2b9183018261c218fd27c87a3f3ab5fabb93a9d0e3c (from https://pypi.org/simple/dark-matter/), version: 1.0.27
2021-06-15T13:42:13,377   Found link https://files.pythonhosted.org/packages/c1/41/a8cb27f9a68dd388473a594c0a5cb162fb1518d16197c357ec3617e9631c/dark-matter-1.0.32.tar.gz#sha256=405b6a4a51ac4c1660435c882fb548d1e6ad1a889779b3893bddf5f876732eef (from https://pypi.org/simple/dark-matter/), version: 1.0.32
2021-06-15T13:42:13,378   Found link https://files.pythonhosted.org/packages/26/f5/ea2b1d090cd00bb769d4e07cc4b697373c58dac65a52cf442a4f60a833ba/dark-matter-1.0.34.tar.gz#sha256=8fe1d83a0b0476164c5a4ca8197890e1936ed0d66a689870a71676a14f671539 (from https://pypi.org/simple/dark-matter/), version: 1.0.34
2021-06-15T13:42:13,379   Found link https://files.pythonhosted.org/packages/1d/a3/954c4ab15080556dbb33a1c2053ce9028b51cb160099978332b9252b5f93/dark-matter-1.0.36.tar.gz#sha256=9f639deedd5d4e4da0276c9a6780288c5d78e95b0c5b69d08b312ed10cc10d25 (from https://pypi.org/simple/dark-matter/), version: 1.0.36
2021-06-15T13:42:13,380   Found link https://files.pythonhosted.org/packages/fd/f7/352dcf1f8fb13001175a73acb52fff4bc20760300f87459d7e1e967823a1/dark-matter-1.0.38.tar.gz#sha256=b506f4177d9334da17c7fdd2054944851b96c3872be6d00cd5ece2de2ddc7d82 (from https://pypi.org/simple/dark-matter/), version: 1.0.38
2021-06-15T13:42:13,380   Found link https://files.pythonhosted.org/packages/17/94/5d0c424a52cc3d16793cef2a6b38a8a3542c4bda072c49d61efd18a1ec60/dark-matter-1.0.40.tar.gz#sha256=6e38036fc94ef7817c18d607b937b916ef1caafe40fe072d4748306b2e646a1f (from https://pypi.org/simple/dark-matter/), version: 1.0.40
2021-06-15T13:42:13,381   Found link https://files.pythonhosted.org/packages/4c/d7/9fa11fcb1f9923e3e980f1b493791ca3fbe6920a68a939971fb1eb333d05/dark-matter-1.0.41.tar.gz#sha256=e6e0364aa69a1fef4621e7d016839a3dffbcddff5d575ba4ee7f4af5cebd754d (from https://pypi.org/simple/dark-matter/), version: 1.0.41
2021-06-15T13:42:13,382   Found link https://files.pythonhosted.org/packages/1b/bb/9a2bffcc74c3bb8c2f45106443174a74dbe3424e45eb483ba7bf72da1fe2/dark-matter-1.0.42.tar.gz#sha256=2540312ed60fed3f5a52b5ec60409e712c8a562569baa132be6ab0c53edbec83 (from https://pypi.org/simple/dark-matter/), version: 1.0.42
2021-06-15T13:42:13,383   Found link https://files.pythonhosted.org/packages/e2/dd/cb0a17ce78d39d3b6d6dc93f54c49069b722569042312f7044143a67af30/dark-matter-1.0.43.tar.gz#sha256=17548e06b695864df72afb4e6664261333612b991373745f4e68f99ed48ace5f (from https://pypi.org/simple/dark-matter/), version: 1.0.43
2021-06-15T13:42:13,384   Found link https://files.pythonhosted.org/packages/88/ee/c6e7d4142ee1baca46ff0d7f295b7d5a4059648c815de4223f873f17a448/dark-matter-1.0.44.tar.gz#sha256=468d2be2ad00ddcdfafe52f09a6a8971b40964e816fdb95de2772d32879d3fc5 (from https://pypi.org/simple/dark-matter/), version: 1.0.44
2021-06-15T13:42:13,384   Found link https://files.pythonhosted.org/packages/7e/71/19001567a982f1ea235095e6f2042990e0666c343bfd985b2c2b8a6a6edc/dark-matter-1.0.45.tar.gz#sha256=b60e397a82b3183fae2cdee32ac92f43f4533bcb5a7683d5fc3e58dd6ceee4fd (from https://pypi.org/simple/dark-matter/), version: 1.0.45
2021-06-15T13:42:13,385   Found link https://files.pythonhosted.org/packages/9b/71/0395a4c77fc9443e4b1c8d6d3787d527c2d06ecf56c75db9779bb602d594/dark-matter-1.0.46.tar.gz#sha256=66aaa9872db60c407b047f5e997c8155fe0626df9222b251a6f65b15ca4d3423 (from https://pypi.org/simple/dark-matter/), version: 1.0.46
2021-06-15T13:42:13,386   Found link https://files.pythonhosted.org/packages/85/3b/b68351e5280d2f65b26ca3e225a5a0385d921a6d25cef62563eeaec42343/dark-matter-1.0.47.tar.gz#sha256=b51c372b06fe94fcc93f8795aa5d2b2a547108934cc5c429e89972cdea153baf (from https://pypi.org/simple/dark-matter/), version: 1.0.47
2021-06-15T13:42:13,387   Found link https://files.pythonhosted.org/packages/fb/4c/6e27c41b817fc86240a956472978b226008da91e8c2b2b5dd991091c3a2d/dark-matter-1.0.48.tar.gz#sha256=e9ca7aad5b5631658d2ab154108568faa6196f7cea8dfaef1881d0013a3c59bd (from https://pypi.org/simple/dark-matter/), version: 1.0.48
2021-06-15T13:42:13,388   Found link https://files.pythonhosted.org/packages/07/65/1253b1fcd6c75fbbc19eee09982ec62023742959583d6687c666befffb71/dark-matter-1.0.49.tar.gz#sha256=7fe2af86f08e9e2416869c8fa571fc79b5a6965d4e2e9624536984a6ede94d5e (from https://pypi.org/simple/dark-matter/), version: 1.0.49
2021-06-15T13:42:13,389   Found link https://files.pythonhosted.org/packages/ac/93/e94fa7a2455aa54ebc294bb5bd93c11aca3c461073aee1fab28b4ee380ae/dark-matter-1.0.50.tar.gz#sha256=cd9ce5690ff46e8a27b17505dc500d0dc065bb403d6aa731615fbcfa0e9ecb50 (from https://pypi.org/simple/dark-matter/), version: 1.0.50
2021-06-15T13:42:13,389   Found link https://files.pythonhosted.org/packages/b9/ce/7d74daae572ebb32ffdbd439440361f5bf39eb9f9d0f55654878cbd7cbb2/dark-matter-1.0.51.tar.gz#sha256=ca7762302eb529ec15dbc0bba35397dc018cb3b43b371b02495ba1caa8fc6fe2 (from https://pypi.org/simple/dark-matter/), version: 1.0.51
2021-06-15T13:42:13,390   Found link https://files.pythonhosted.org/packages/cd/fb/8ff473df5992d3cdfc57151ff5595561c42fff343fcc01c76f3b95cd1eb9/dark-matter-1.0.52.tar.gz#sha256=7c5cadd1c74c4c85d55ec808f2ecd1a86abf726b7f3dc4b8755a32dc81a57094 (from https://pypi.org/simple/dark-matter/), version: 1.0.52
2021-06-15T13:42:13,391   Found link https://files.pythonhosted.org/packages/d4/a7/8e4a7fc079ce3324a605902fb7fe865ab846ba3376408987680cc68703c7/dark-matter-1.0.53.tar.gz#sha256=c06386be8fc1f85e76fc6f7c6b8ea6597503a9c238e5368e0975f18ea9fe3f6a (from https://pypi.org/simple/dark-matter/), version: 1.0.53
2021-06-15T13:42:13,392   Found link https://files.pythonhosted.org/packages/a8/50/55d45de9c1903904647e651a955b56dff452d61f9e095a5004a149ab2eca/dark-matter-1.0.54.tar.gz#sha256=cb4fefda8208eb0d40c4b172c30286b4be960018e89c89aacb94f177cbd0a77a (from https://pypi.org/simple/dark-matter/), version: 1.0.54
2021-06-15T13:42:13,393   Found link https://files.pythonhosted.org/packages/47/41/cc272f599662d184f754abc67ee763ac9da02c5d9ef5d1155effe67d132f/dark-matter-1.0.55.tar.gz#sha256=d1b4537860411417b98b32252f8a363623c263464c32d994cd442de74e36d4d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.55
2021-06-15T13:42:13,393   Found link https://files.pythonhosted.org/packages/d3/d8/250e7506219460c7da81f6f51bf93cce13d21b461392dcbfa1311e504a95/dark-matter-1.0.56.tar.gz#sha256=d5cbddab4a2b8cc948329f46660259c2bb30b866446ddfc12e8c6b8ddc9822ff (from https://pypi.org/simple/dark-matter/), version: 1.0.56
2021-06-15T13:42:13,394   Found link https://files.pythonhosted.org/packages/81/c7/3bf4ec17c4f0e02ca7741f7ede49d58680f12b48a4a7350031ffe8b38ba1/dark-matter-1.0.57.tar.gz#sha256=3d33c771486b56c8a4dd10fb70f91e4c0ce1d279d05cbdf6dac92cceffb35809 (from https://pypi.org/simple/dark-matter/), version: 1.0.57
2021-06-15T13:42:13,395   Found link https://files.pythonhosted.org/packages/f1/d5/6e02cb418664b484f16ea42b60a86add44acf56dda4875001528957c27b2/dark-matter-1.0.58.tar.gz#sha256=6a9e75658cacc7ae7e9926d0debd5605e15e5761452455e4f65c96b3cd947c6b (from https://pypi.org/simple/dark-matter/), version: 1.0.58
2021-06-15T13:42:13,396   Found link https://files.pythonhosted.org/packages/5a/d3/a69ed2feeac3afcb852a8bcce6cadd5b541cd78de3756f0519a62ca29371/dark-matter-1.0.59.tar.gz#sha256=1f0c71e01cce5ca62b1599c974ff24b8b211349f880c365ecbdce369c6877280 (from https://pypi.org/simple/dark-matter/), version: 1.0.59
2021-06-15T13:42:13,397   Found link https://files.pythonhosted.org/packages/68/70/96bd4a89d1c5f40e05d734be94ae1571be35c0b4c4e19e22c0be893c9e1c/dark-matter-1.0.60.tar.gz#sha256=933a4cc3f34ed03198cacedaab9cc0915402bfff0ad238a0f879c7b246243f02 (from https://pypi.org/simple/dark-matter/), version: 1.0.60
2021-06-15T13:42:13,398   Found link https://files.pythonhosted.org/packages/55/52/ab50ff5d12bb5efd1171a964a4f5baa03edb0091dfa5c79af08fbbe4da16/dark-matter-1.0.61.tar.gz#sha256=09e5bdfd05c954d34fc87541f61a416169ae53daea1a22723de915a9f50ea9e4 (from https://pypi.org/simple/dark-matter/), version: 1.0.61
2021-06-15T13:42:13,399   Found link https://files.pythonhosted.org/packages/ab/de/cc9a342e642f66e60c8ff98d1786229d5cfcfb0306158f0c19ef61059303/dark-matter-1.0.62.tar.gz#sha256=6f7347e0923abd2eb2118862a03966c5204262e5d496e11900de3aed43724265 (from https://pypi.org/simple/dark-matter/), version: 1.0.62
2021-06-15T13:42:13,400   Found link https://files.pythonhosted.org/packages/cd/a5/713b8a9f25437fafe2a34291ca34f945c9e1394c2e600f73e5abd8e3282e/dark-matter-1.0.63.tar.gz#sha256=fca60020cce6b249f61f6ae5e268dbd20f71a2d257bb668c84313ca29d6873b1 (from https://pypi.org/simple/dark-matter/), version: 1.0.63
2021-06-15T13:42:13,401   Found link https://files.pythonhosted.org/packages/77/fe/320a21e0c4c116bd28487af7156a9937a90dcc44f70c4f720267e9b14291/dark-matter-1.0.64.tar.gz#sha256=d1c1764b08f3fbdf71f46a5f9acbe0deadb96d5af5b4b99d8b19e13e4abe9e3d (from https://pypi.org/simple/dark-matter/), version: 1.0.64
2021-06-15T13:42:13,402   Found link https://files.pythonhosted.org/packages/a0/08/9be54a6570a6acf6f87d5ca8ff9f91660697fc32212d0be3601785e796b9/dark-matter-1.0.65.tar.gz#sha256=1332fafc881be70d395aa69ed174c0036941f2d4f8e170f24ba6c0fa14397de6 (from https://pypi.org/simple/dark-matter/), version: 1.0.65
2021-06-15T13:42:13,403   Found link https://files.pythonhosted.org/packages/7b/61/46caedf674111789641d78a4252b26d1ea43d3d8c77f906b3abc7c638acc/dark-matter-1.0.66.tar.gz#sha256=a0ad6f3e8afe8294c1aa5011577533334d2a6cbb16eaaa9b48a451fe0a9db293 (from https://pypi.org/simple/dark-matter/), version: 1.0.66
2021-06-15T13:42:13,403   Found link https://files.pythonhosted.org/packages/97/54/fc8129e31460a4007b2d328e37efeb55a3488b7a7a34592e0c738ac27079/dark-matter-1.0.67.tar.gz#sha256=709dbe5d0c6df732587900ea0ee3a8508fd43a37d7aff3ec5387bbee7d7917cd (from https://pypi.org/simple/dark-matter/), version: 1.0.67
2021-06-15T13:42:13,404   Found link https://files.pythonhosted.org/packages/e5/33/890848c35cb392c57712943c79ffe317ce401bd2db2a616637719f8c5522/dark-matter-1.0.68.tar.gz#sha256=5426893dee726d1f3da0d38176f4489d983e698b36586b2a5d4030ccfd38ae9f (from https://pypi.org/simple/dark-matter/), version: 1.0.68
2021-06-15T13:42:13,405   Found link https://files.pythonhosted.org/packages/c2/23/5e4253583920bada6ee2f5204fbaf8a745527f8ba5c585ac8891fa959991/dark-matter-1.0.69.tar.gz#sha256=494ab515566d76d337f7b25186921029e01e84460ae1f2d81c355a9ae135a18c (from https://pypi.org/simple/dark-matter/), version: 1.0.69
2021-06-15T13:42:13,406   Found link https://files.pythonhosted.org/packages/3d/6a/1cf82dcc5f77ac300a3ee4c1fce72edad81280795e42f0da80b67b3a1838/dark-matter-1.0.70.tar.gz#sha256=f74facc816c78353ee9cdeeac334e9e03d05c38cc381588def6443125fe7ff17 (from https://pypi.org/simple/dark-matter/), version: 1.0.70
2021-06-15T13:42:13,407   Found link https://files.pythonhosted.org/packages/64/9a/ace6de00719320e68408c58f3abe036645a29901f17e3e1cd356260cb9f5/dark-matter-1.0.71.tar.gz#sha256=f0ed0a32bf00786a18d3b50596ad79ec24f01ed3fa9d56f36efec9db58a750a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.71
2021-06-15T13:42:13,408   Found link https://files.pythonhosted.org/packages/94/d0/a1e5aabab8ad66683757b3b0569d672da3528a5a8619f830f33c2d6bb179/dark-matter-1.0.72.tar.gz#sha256=3cab3d9241f6fccf0e1a88ed3f572b90bd296c41810b85b49054ba4238742061 (from https://pypi.org/simple/dark-matter/), version: 1.0.72
2021-06-15T13:42:13,409   Found link https://files.pythonhosted.org/packages/a2/1a/f7d17f7e7d196b1fb5382a27adc6ae61bbc4c47ad812c9e78de890b61743/dark-matter-1.0.73.tar.gz#sha256=ef4359ea0a02e00b3f1b06754da34fb6cfbe030ecd3976dac50841c0ae46c062 (from https://pypi.org/simple/dark-matter/), version: 1.0.73
2021-06-15T13:42:13,409   Found link https://files.pythonhosted.org/packages/8e/dc/f8fbeb00d964a029f3e444ed65ba9ca0f69e83c4b19d93efb858ac9d67cf/dark-matter-1.0.74.tar.gz#sha256=90c2fc0dcc27bbd558041ae982768c630c602360754f3e07577c2711966c1fb7 (from https://pypi.org/simple/dark-matter/), version: 1.0.74
2021-06-15T13:42:13,410   Found link https://files.pythonhosted.org/packages/26/50/60d51f6d26ec912a10cd058c4221c4794813080bcccd2f5af993a2bfe973/dark-matter-1.0.75.tar.gz#sha256=9db8994744be84b8d67035bff720b4b8330e8682339d3bef01a857210d400c50 (from https://pypi.org/simple/dark-matter/), version: 1.0.75
2021-06-15T13:42:13,411   Found link https://files.pythonhosted.org/packages/03/bb/45b48f894b2b3f2a08e9e3c3c07ce133db94e91a363688f3ab9ce4969d80/dark-matter-1.0.76.tar.gz#sha256=940772c257a0f785f0f5efa53a7075692b5fa889a6c1d3432e17929fc30a1179 (from https://pypi.org/simple/dark-matter/), version: 1.0.76
2021-06-15T13:42:13,412   Found link https://files.pythonhosted.org/packages/5a/b2/63dea9b0ab7517190dd58b390cd9f0c007da74ad33c1ce37a74e6640e62c/dark-matter-1.0.77.tar.gz#sha256=e027b5a28158d9e74d712bdc4651580fe3c14be15a124a7a7634523e2cafd842 (from https://pypi.org/simple/dark-matter/), version: 1.0.77
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2021-06-15T13:42:13,590   Found link https://files.pythonhosted.org/packages/fe/74/37ca77e38cc0080fbe164321e7ab6be1552960f966c11c12ba6a138c1cdb/dark-matter-3.2.3.tar.gz#sha256=51d99ef9b8c7628613fed3519fac86d2575c56f4977150d0ec017a440b869692 (from https://pypi.org/simple/dark-matter/), version: 3.2.3
2021-06-15T13:42:13,591   Found link https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 (from https://pypi.org/simple/dark-matter/), version: 3.2.4
2021-06-15T13:42:13,592   Found link https://files.pythonhosted.org/packages/95/55/bb9433858a72e5030fe4579502698e18fe9f21ec51f4d34a9f3f33913aed/dark-matter-3.2.5.tar.gz#sha256=1a31e2be7d17f7a47cc07b566ed2a822559fb09072efda9827666ba83d560c41 (from https://pypi.org/simple/dark-matter/), version: 3.2.5
2021-06-15T13:42:13,592   Found link https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a (from https://pypi.org/simple/dark-matter/), version: 3.2.6
2021-06-15T13:42:13,593   Found link https://files.pythonhosted.org/packages/91/46/1547ccfdd762ae0eca10c8781419157a1350f009d02f1eaf0f02f4666d43/dark-matter-4.0.1.tar.gz#sha256=0bc78eb30abeb495a923f91ca67042a947c142b0bfef173c9c04168521d596bb (from https://pypi.org/simple/dark-matter/), version: 4.0.1
2021-06-15T13:42:13,594   Found link https://files.pythonhosted.org/packages/39/dc/3679eaa104a9298af74106ead1b3de2e8f4105c9762d489af4ad9f31c177/dark-matter-4.0.2.tar.gz#sha256=d7c6f9fc10eafea5539e25c54752ad038d69111889588166b9c1ea34c2fcc117 (from https://pypi.org/simple/dark-matter/), version: 4.0.2
2021-06-15T13:42:13,721 Given no hashes to check 1 links for project 'dark-matter': discarding no candidates
2021-06-15T13:42:13,754 Collecting dark-matter==4.0.2
2021-06-15T13:42:13,757   Created temporary directory: /tmp/pip-unpack-vm95glpn
2021-06-15T13:42:13,967   Downloading dark-matter-4.0.2.tar.gz (332 kB)
2021-06-15T13:42:15,047   Added dark-matter==4.0.2 from https://files.pythonhosted.org/packages/39/dc/3679eaa104a9298af74106ead1b3de2e8f4105c9762d489af4ad9f31c177/dark-matter-4.0.2.tar.gz#sha256=d7c6f9fc10eafea5539e25c54752ad038d69111889588166b9c1ea34c2fcc117 to build tracker '/tmp/pip-req-tracker-frwwvzlv'
2021-06-15T13:42:15,050     Running setup.py (path:/tmp/pip-wheel-smslab4x/dark-matter_c2d83d61ef1f488e813e156f77242811/setup.py) egg_info for package dark-matter
2021-06-15T13:42:15,052     Created temporary directory: /tmp/pip-pip-egg-info-hp3x_xg6
2021-06-15T13:42:15,054     Running command python setup.py egg_info
2021-06-15T13:42:16,989     running egg_info
2021-06-15T13:42:16,994     creating /tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info
2021-06-15T13:42:16,996     writing dependency_links to /tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info/dependency_links.txt
2021-06-15T13:42:16,998     writing /tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info/PKG-INFO
2021-06-15T13:42:17,002     writing top-level names to /tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info/top_level.txt
2021-06-15T13:42:17,003     writing requirements to /tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info/requires.txt
2021-06-15T13:42:17,008     writing manifest file '/tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info/SOURCES.txt'
2021-06-15T13:42:17,348     reading manifest file '/tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info/SOURCES.txt'
2021-06-15T13:42:17,369     writing manifest file '/tmp/pip-pip-egg-info-hp3x_xg6/dark_matter.egg-info/SOURCES.txt'
2021-06-15T13:42:17,492   Source in /tmp/pip-wheel-smslab4x/dark-matter_c2d83d61ef1f488e813e156f77242811 has version 4.0.2, which satisfies requirement dark-matter==4.0.2 from https://files.pythonhosted.org/packages/39/dc/3679eaa104a9298af74106ead1b3de2e8f4105c9762d489af4ad9f31c177/dark-matter-4.0.2.tar.gz#sha256=d7c6f9fc10eafea5539e25c54752ad038d69111889588166b9c1ea34c2fcc117
2021-06-15T13:42:17,498   Removed dark-matter==4.0.2 from https://files.pythonhosted.org/packages/39/dc/3679eaa104a9298af74106ead1b3de2e8f4105c9762d489af4ad9f31c177/dark-matter-4.0.2.tar.gz#sha256=d7c6f9fc10eafea5539e25c54752ad038d69111889588166b9c1ea34c2fcc117 from build tracker '/tmp/pip-req-tracker-frwwvzlv'
2021-06-15T13:42:17,506 Created temporary directory: /tmp/pip-unpack-ubh0owkf
2021-06-15T13:42:17,507 Building wheels for collected packages: dark-matter
2021-06-15T13:42:17,515   Created temporary directory: /tmp/pip-wheel-bous_cmv
2021-06-15T13:42:17,515   Building wheel for dark-matter (setup.py): started
2021-06-15T13:42:17,516   Destination directory: /tmp/pip-wheel-bous_cmv
2021-06-15T13:42:17,517   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-smslab4x/dark-matter_c2d83d61ef1f488e813e156f77242811/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-smslab4x/dark-matter_c2d83d61ef1f488e813e156f77242811/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bous_cmv
2021-06-15T13:42:19,609   running bdist_wheel
2021-06-15T13:42:19,621   running build
2021-06-15T13:42:19,622   running build_py
2021-06-15T13:42:19,915   creating build
2021-06-15T13:42:19,915   creating build/lib
2021-06-15T13:42:19,916   creating build/lib/dark
2021-06-15T13:42:19,918   copying dark/fasta_ss.py -> build/lib/dark
2021-06-15T13:42:19,923   copying dark/sequence.py -> build/lib/dark
2021-06-15T13:42:19,926   copying dark/filter.py -> build/lib/dark
2021-06-15T13:42:19,931   copying dark/distance.py -> build/lib/dark
2021-06-15T13:42:19,934   copying dark/colors.py -> build/lib/dark
2021-06-15T13:42:19,939   copying dark/aa.py -> build/lib/dark
2021-06-15T13:42:19,945   copying dark/process.py -> build/lib/dark
2021-06-15T13:42:19,951   copying dark/fastq.py -> build/lib/dark
2021-06-15T13:42:19,956   copying dark/bowtie2.py -> build/lib/dark
2021-06-15T13:42:19,962   copying dark/titles.py -> build/lib/dark
2021-06-15T13:42:19,969   copying dark/summarize.py -> build/lib/dark
2021-06-15T13:42:19,975   copying dark/fpcache.py -> build/lib/dark
2021-06-15T13:42:19,982   copying dark/hsp.py -> build/lib/dark
2021-06-15T13:42:19,991   copying dark/genbank.py -> build/lib/dark
2021-06-15T13:42:20,003   copying dark/sam.py -> build/lib/dark
2021-06-15T13:42:20,017   copying dark/aligners.py -> build/lib/dark
2021-06-15T13:42:20,028   copying dark/analyze_reads.py -> build/lib/dark
2021-06-15T13:42:20,039   copying dark/score.py -> build/lib/dark
2021-06-15T13:42:20,050   copying dark/__init__.py -> build/lib/dark
2021-06-15T13:42:20,060   copying dark/intervals.py -> build/lib/dark
2021-06-15T13:42:20,067   copying dark/database.py -> build/lib/dark
2021-06-15T13:42:20,077   copying dark/ncbidb.py -> build/lib/dark
2021-06-15T13:42:20,089   copying dark/ipynb.py -> build/lib/dark
2021-06-15T13:42:20,101   copying dark/codonDistance.py -> build/lib/dark
2021-06-15T13:42:20,114   copying dark/alignments.py -> build/lib/dark
2021-06-15T13:42:20,128   copying dark/graphics.py -> build/lib/dark
2021-06-15T13:42:20,144   copying dark/consensus.py -> build/lib/dark
2021-06-15T13:42:20,157   copying dark/fasta.py -> build/lib/dark
2021-06-15T13:42:20,167   copying dark/errors.py -> build/lib/dark
2021-06-15T13:42:20,175   copying dark/btop.py -> build/lib/dark
2021-06-15T13:42:20,184   copying dark/local_align.py -> build/lib/dark
2021-06-15T13:42:20,194   copying dark/taxonomy.py -> build/lib/dark
2021-06-15T13:42:20,203   copying dark/mutations.py -> build/lib/dark
2021-06-15T13:42:20,213   copying dark/reads.py -> build/lib/dark
2021-06-15T13:42:20,225   copying dark/proteins.py -> build/lib/dark
2021-06-15T13:42:20,232   copying dark/entrez.py -> build/lib/dark
2021-06-15T13:42:20,236   copying dark/genomes.py -> build/lib/dark
2021-06-15T13:42:20,239   copying dark/utils.py -> build/lib/dark
2021-06-15T13:42:20,243   copying dark/html.py -> build/lib/dark
2021-06-15T13:42:20,246   copying dark/cigar.py -> build/lib/dark
2021-06-15T13:42:20,249   copying dark/orfs.py -> build/lib/dark
2021-06-15T13:42:20,252   copying dark/features.py -> build/lib/dark
2021-06-15T13:42:20,256   copying dark/dimension.py -> build/lib/dark
2021-06-15T13:42:20,259   copying dark/baseimage.py -> build/lib/dark
2021-06-15T13:42:20,262   copying dark/dna.py -> build/lib/dark
2021-06-15T13:42:20,266   copying dark/simplify.py -> build/lib/dark
2021-06-15T13:42:20,270   creating build/lib/dark/blast
2021-06-15T13:42:20,272   copying dark/blast/conversion.py -> build/lib/dark/blast
2021-06-15T13:42:20,276   copying dark/blast/params.py -> build/lib/dark/blast
2021-06-15T13:42:20,279   copying dark/blast/hsp.py -> build/lib/dark/blast
2021-06-15T13:42:20,283   copying dark/blast/hacks.py -> build/lib/dark/blast
2021-06-15T13:42:20,286   copying dark/blast/score.py -> build/lib/dark/blast
2021-06-15T13:42:20,289   copying dark/blast/__init__.py -> build/lib/dark/blast
2021-06-15T13:42:20,291   copying dark/blast/alignments.py -> build/lib/dark/blast
2021-06-15T13:42:20,295   copying dark/blast/records.py -> build/lib/dark/blast
2021-06-15T13:42:20,299   creating build/lib/dark/diamond
2021-06-15T13:42:20,300   copying dark/diamond/conversion.py -> build/lib/dark/diamond
2021-06-15T13:42:20,305   copying dark/diamond/hsp.py -> build/lib/dark/diamond
2021-06-15T13:42:20,308   copying dark/diamond/sam.py -> build/lib/dark/diamond
2021-06-15T13:42:20,312   copying dark/diamond/__init__.py -> build/lib/dark/diamond
2021-06-15T13:42:20,315   copying dark/diamond/run.py -> build/lib/dark/diamond
2021-06-15T13:42:20,319   copying dark/diamond/alignments.py -> build/lib/dark/diamond
2021-06-15T13:42:20,324   creating build/lib/dark/civ
2021-06-15T13:42:20,325   copying dark/civ/__init__.py -> build/lib/dark/civ
2021-06-15T13:42:20,328   copying dark/civ/graphics.py -> build/lib/dark/civ
2021-06-15T13:42:20,333   copying dark/civ/proteins.py -> build/lib/dark/civ
2021-06-15T13:42:20,341   copying dark/civ/html.py -> build/lib/dark/civ
2021-06-15T13:42:20,354   running build_scripts
2021-06-15T13:42:20,355   creating build/scripts-3.5
2021-06-15T13:42:20,357   copying and adjusting bin/aa-info.py -> build/scripts-3.5
2021-06-15T13:42:20,360   copying and adjusting bin/aa-to-dna.py -> build/scripts-3.5
2021-06-15T13:42:20,362   copying and adjusting bin/aa-to-properties.py -> build/scripts-3.5
2021-06-15T13:42:20,365   copying and adjusting bin/adaptor-distances.py -> build/scripts-3.5
2021-06-15T13:42:20,368   copying and adjusting bin/alignment-panel-civ.py -> build/scripts-3.5
2021-06-15T13:42:20,372   copying and adjusting bin/alignments-per-read.py -> build/scripts-3.5
2021-06-15T13:42:20,375   copying and adjusting bin/bit-score-to-e-value.py -> build/scripts-3.5
2021-06-15T13:42:20,377   copying and adjusting bin/cat-json-blast-records.py -> build/scripts-3.5
2021-06-15T13:42:20,380   copying and adjusting bin/check-fasta-json-blast-consistency.py -> build/scripts-3.5
2021-06-15T13:42:20,383   copying and adjusting bin/codon-distance.py -> build/scripts-3.5
2021-06-15T13:42:20,386   copying and adjusting bin/compare-consensuses.py -> build/scripts-3.5
2021-06-15T13:42:20,389   copying and adjusting bin/compare-sequences.py -> build/scripts-3.5
2021-06-15T13:42:20,392   copying and adjusting bin/convert-blast-xml-to-json.py -> build/scripts-3.5
2021-06-15T13:42:20,395   copying and adjusting bin/convert-diamond-to-json.py -> build/scripts-3.5
2021-06-15T13:42:20,398   copying and adjusting bin/convert-diamond-to-sam.py -> build/scripts-3.5
2021-06-15T13:42:20,401   copying bin/convert-sam-to-fastq.sh -> build/scripts-3.5
2021-06-15T13:42:20,405   copying and adjusting bin/create-newick-relabeling-output.py -> build/scripts-3.5
2021-06-15T13:42:20,407   copying and adjusting bin/dark-matter-version.py -> build/scripts-3.5
2021-06-15T13:42:20,410   copying and adjusting bin/describe-protein-database.py -> build/scripts-3.5
2021-06-15T13:42:20,412   copying and adjusting bin/dna-to-aa.py -> build/scripts-3.5
2021-06-15T13:42:20,415   copying bin/download-genbank.sh -> build/scripts-3.5
2021-06-15T13:42:20,420   copying and adjusting bin/e-value-to-bit-score.py -> build/scripts-3.5
2021-06-15T13:42:20,424   copying and adjusting bin/extract-ORFs.py -> build/scripts-3.5
2021-06-15T13:42:20,429   copying and adjusting bin/fasta-base-indices.py -> build/scripts-3.5
2021-06-15T13:42:20,434   copying and adjusting bin/fasta-count.py -> build/scripts-3.5
2021-06-15T13:42:20,438   copying bin/fasta-diff.sh -> build/scripts-3.5
2021-06-15T13:42:20,442   copying and adjusting bin/fasta-identity-table.py -> build/scripts-3.5
2021-06-15T13:42:20,447   copying and adjusting bin/fasta-ids.py -> build/scripts-3.5
2021-06-15T13:42:20,450   copying and adjusting bin/fasta-join.py -> build/scripts-3.5
2021-06-15T13:42:20,453   copying and adjusting bin/fasta-lengths.py -> build/scripts-3.5
2021-06-15T13:42:20,456   copying and adjusting bin/fasta-sequences.py -> build/scripts-3.5
2021-06-15T13:42:20,459   copying and adjusting bin/fasta-sort.py -> build/scripts-3.5
2021-06-15T13:42:20,462   copying and adjusting bin/fasta-split-by-id.py -> build/scripts-3.5
2021-06-15T13:42:20,464   copying and adjusting bin/fasta-subset.py -> build/scripts-3.5
2021-06-15T13:42:20,467   copying and adjusting bin/fasta-subtraction.py -> build/scripts-3.5
2021-06-15T13:42:20,470   copying and adjusting bin/fasta-to-phylip.py -> build/scripts-3.5
2021-06-15T13:42:20,473   copying and adjusting bin/fasta-variable-sites.py -> build/scripts-3.5
2021-06-15T13:42:20,476   copying and adjusting bin/filter-fasta-by-complexity.py -> build/scripts-3.5
2021-06-15T13:42:20,479   copying and adjusting bin/filter-fasta-by-taxonomy.py -> build/scripts-3.5
2021-06-15T13:42:20,483   copying and adjusting bin/filter-fasta.py -> build/scripts-3.5
2021-06-15T13:42:20,486   copying and adjusting bin/filter-hits-to-fasta.py -> build/scripts-3.5
2021-06-15T13:42:20,490   copying and adjusting bin/filter-reads-alignments.py -> build/scripts-3.5
2021-06-15T13:42:20,494   copying and adjusting bin/filter-sam.py -> build/scripts-3.5
2021-06-15T13:42:20,497   copying and adjusting bin/find-hits.py -> build/scripts-3.5
2021-06-15T13:42:20,499   copying and adjusting bin/format-fasta.py -> build/scripts-3.5
2021-06-15T13:42:20,502   copying and adjusting bin/genome-protein-summary.py -> build/scripts-3.5
2021-06-15T13:42:20,507   copying and adjusting bin/get-features.py -> build/scripts-3.5
2021-06-15T13:42:20,510   copying and adjusting bin/get-hosts.py -> build/scripts-3.5
2021-06-15T13:42:20,513   copying and adjusting bin/get-reads.py -> build/scripts-3.5
2021-06-15T13:42:20,516   copying and adjusting bin/get-taxonomy.py -> build/scripts-3.5
2021-06-15T13:42:20,520   copying and adjusting bin/graph-evalues.py -> build/scripts-3.5
2021-06-15T13:42:20,524   copying and adjusting bin/local-align.py -> build/scripts-3.5
2021-06-15T13:42:20,528   copying and adjusting bin/make-consensus.py -> build/scripts-3.5
2021-06-15T13:42:20,535   copying and adjusting bin/make-fasta-database.py -> build/scripts-3.5
2021-06-15T13:42:20,539   copying and adjusting bin/make-protein-database.py -> build/scripts-3.5
2021-06-15T13:42:20,543   copying and adjusting bin/ncbi-fetch-id.py -> build/scripts-3.5
2021-06-15T13:42:20,546   copying and adjusting bin/newick-to-ascii.py -> build/scripts-3.5
2021-06-15T13:42:20,549   copying and adjusting bin/noninteractive-alignment-panel.py -> build/scripts-3.5
2021-06-15T13:42:20,554   copying and adjusting bin/parse-genbank-flat-file.py -> build/scripts-3.5
2021-06-15T13:42:20,557   copying and adjusting bin/position-summary.py -> build/scripts-3.5
2021-06-15T13:42:20,561   copying bin/pre-commit.sh -> build/scripts-3.5
2021-06-15T13:42:20,567   copying and adjusting bin/print-blast-xml-for-derek.py -> build/scripts-3.5
2021-06-15T13:42:20,569   copying and adjusting bin/print-blast-xml.py -> build/scripts-3.5
2021-06-15T13:42:20,572   copying and adjusting bin/print-read-lengths.py -> build/scripts-3.5
2021-06-15T13:42:20,575   copying and adjusting bin/proteins-to-pathogens.py -> build/scripts-3.5
2021-06-15T13:42:20,579   copying and adjusting bin/proteins-to-pathogens-civ.py -> build/scripts-3.5
2021-06-15T13:42:20,584   copying and adjusting bin/randomize-fasta.py -> build/scripts-3.5
2021-06-15T13:42:20,587   copying and adjusting bin/read-blast-json.py -> build/scripts-3.5
2021-06-15T13:42:20,591   copying and adjusting bin/read-blast-xml.py -> build/scripts-3.5
2021-06-15T13:42:20,593   copying and adjusting bin/relabel-newick-tree.py -> build/scripts-3.5
2021-06-15T13:42:20,596   copying and adjusting bin/run-bwa.py -> build/scripts-3.5
2021-06-15T13:42:20,599   copying and adjusting bin/run-bowtie2.py -> build/scripts-3.5
2021-06-15T13:42:20,604   copying and adjusting bin/sam-coverage.py -> build/scripts-3.5
2021-06-15T13:42:20,608   copying and adjusting bin/sam-coverage-depth.py -> build/scripts-3.5
2021-06-15T13:42:20,611   copying and adjusting bin/sam-to-fasta-alignment.py -> build/scripts-3.5
2021-06-15T13:42:20,614   copying and adjusting bin/sam-reference-read-counts.py -> build/scripts-3.5
2021-06-15T13:42:20,617   copying and adjusting bin/sam-references.py -> build/scripts-3.5
2021-06-15T13:42:20,620   copying and adjusting bin/sff-to-fastq.py -> build/scripts-3.5
2021-06-15T13:42:20,623   copying and adjusting bin/split-fasta-by-adaptors.py -> build/scripts-3.5
2021-06-15T13:42:20,628   copying and adjusting bin/subset-protein-database.py -> build/scripts-3.5
2021-06-15T13:42:20,632   copying and adjusting bin/summarize-fasta-bases.py -> build/scripts-3.5
2021-06-15T13:42:20,635   copying and adjusting bin/summarize-reads.py -> build/scripts-3.5
2021-06-15T13:42:20,638   copying and adjusting bin/translate.py -> build/scripts-3.5
2021-06-15T13:42:20,642   copying and adjusting bin/trim-primers.py -> build/scripts-3.5
2021-06-15T13:42:20,647   copying and adjusting bin/trim-reads.py -> build/scripts-3.5
2021-06-15T13:42:20,652   copying and adjusting bin/write-htcondor-job-spec.py -> build/scripts-3.5
2021-06-15T13:42:20,657   changing mode of build/scripts-3.5/aa-info.py from 644 to 755
2021-06-15T13:42:20,658   changing mode of build/scripts-3.5/aa-to-dna.py from 644 to 755
2021-06-15T13:42:20,660   changing mode of build/scripts-3.5/aa-to-properties.py from 644 to 755
2021-06-15T13:42:20,661   changing mode of build/scripts-3.5/adaptor-distances.py from 644 to 755
2021-06-15T13:42:20,662   changing mode of build/scripts-3.5/alignment-panel-civ.py from 644 to 755
2021-06-15T13:42:20,662   changing mode of build/scripts-3.5/alignments-per-read.py from 644 to 755
2021-06-15T13:42:20,663   changing mode of build/scripts-3.5/bit-score-to-e-value.py from 644 to 755
2021-06-15T13:42:20,664   changing mode of build/scripts-3.5/cat-json-blast-records.py from 644 to 755
2021-06-15T13:42:20,664   changing mode of build/scripts-3.5/check-fasta-json-blast-consistency.py from 644 to 755
2021-06-15T13:42:20,665   changing mode of build/scripts-3.5/codon-distance.py from 644 to 755
2021-06-15T13:42:20,666   changing mode of build/scripts-3.5/compare-consensuses.py from 644 to 755
2021-06-15T13:42:20,666   changing mode of build/scripts-3.5/compare-sequences.py from 644 to 755
2021-06-15T13:42:20,667   changing mode of build/scripts-3.5/convert-blast-xml-to-json.py from 644 to 755
2021-06-15T13:42:20,668   changing mode of build/scripts-3.5/convert-diamond-to-json.py from 644 to 755
2021-06-15T13:42:20,669   changing mode of build/scripts-3.5/convert-diamond-to-sam.py from 644 to 755
2021-06-15T13:42:20,669   changing mode of build/scripts-3.5/create-newick-relabeling-output.py from 644 to 755
2021-06-15T13:42:20,670   changing mode of build/scripts-3.5/dark-matter-version.py from 644 to 755
2021-06-15T13:42:20,671   changing mode of build/scripts-3.5/describe-protein-database.py from 644 to 755
2021-06-15T13:42:20,671   changing mode of build/scripts-3.5/dna-to-aa.py from 644 to 755
2021-06-15T13:42:20,672   changing mode of build/scripts-3.5/e-value-to-bit-score.py from 644 to 755
2021-06-15T13:42:20,673   changing mode of build/scripts-3.5/extract-ORFs.py from 644 to 755
2021-06-15T13:42:20,673   changing mode of build/scripts-3.5/fasta-base-indices.py from 644 to 755
2021-06-15T13:42:20,674   changing mode of build/scripts-3.5/fasta-count.py from 644 to 755
2021-06-15T13:42:20,675   changing mode of build/scripts-3.5/fasta-identity-table.py from 644 to 755
2021-06-15T13:42:20,676   changing mode of build/scripts-3.5/fasta-ids.py from 644 to 755
2021-06-15T13:42:20,676   changing mode of build/scripts-3.5/fasta-join.py from 644 to 755
2021-06-15T13:42:20,677   changing mode of build/scripts-3.5/fasta-lengths.py from 644 to 755
2021-06-15T13:42:20,678   changing mode of build/scripts-3.5/fasta-sequences.py from 644 to 755
2021-06-15T13:42:20,678   changing mode of build/scripts-3.5/fasta-sort.py from 644 to 755
2021-06-15T13:42:20,679   changing mode of build/scripts-3.5/fasta-split-by-id.py from 644 to 755
2021-06-15T13:42:20,680   changing mode of build/scripts-3.5/fasta-subset.py from 644 to 755
2021-06-15T13:42:20,680   changing mode of build/scripts-3.5/fasta-subtraction.py from 644 to 755
2021-06-15T13:42:20,681   changing mode of build/scripts-3.5/fasta-to-phylip.py from 644 to 755
2021-06-15T13:42:20,682   changing mode of build/scripts-3.5/fasta-variable-sites.py from 644 to 755
2021-06-15T13:42:20,682   changing mode of build/scripts-3.5/filter-fasta-by-complexity.py from 644 to 755
2021-06-15T13:42:20,683   changing mode of build/scripts-3.5/filter-fasta-by-taxonomy.py from 644 to 755
2021-06-15T13:42:20,684   changing mode of build/scripts-3.5/filter-fasta.py from 644 to 755
2021-06-15T13:42:20,684   changing mode of build/scripts-3.5/filter-hits-to-fasta.py from 644 to 755
2021-06-15T13:42:20,685   changing mode of build/scripts-3.5/filter-reads-alignments.py from 644 to 755
2021-06-15T13:42:20,686   changing mode of build/scripts-3.5/filter-sam.py from 644 to 755
2021-06-15T13:42:20,686   changing mode of build/scripts-3.5/find-hits.py from 644 to 755
2021-06-15T13:42:20,687   changing mode of build/scripts-3.5/format-fasta.py from 644 to 755
2021-06-15T13:42:20,688   changing mode of build/scripts-3.5/genome-protein-summary.py from 644 to 755
2021-06-15T13:42:20,688   changing mode of build/scripts-3.5/get-features.py from 644 to 755
2021-06-15T13:42:20,689   changing mode of build/scripts-3.5/get-hosts.py from 644 to 755
2021-06-15T13:42:20,689   changing mode of build/scripts-3.5/get-reads.py from 644 to 755
2021-06-15T13:42:20,690   changing mode of build/scripts-3.5/get-taxonomy.py from 644 to 755
2021-06-15T13:42:20,691   changing mode of build/scripts-3.5/graph-evalues.py from 644 to 755
2021-06-15T13:42:20,691   changing mode of build/scripts-3.5/local-align.py from 644 to 755
2021-06-15T13:42:20,692   changing mode of build/scripts-3.5/make-consensus.py from 644 to 755
2021-06-15T13:42:20,692   changing mode of build/scripts-3.5/make-fasta-database.py from 644 to 755
2021-06-15T13:42:20,693   changing mode of build/scripts-3.5/make-protein-database.py from 644 to 755
2021-06-15T13:42:20,694   changing mode of build/scripts-3.5/ncbi-fetch-id.py from 644 to 755
2021-06-15T13:42:20,694   changing mode of build/scripts-3.5/newick-to-ascii.py from 644 to 755
2021-06-15T13:42:20,695   changing mode of build/scripts-3.5/noninteractive-alignment-panel.py from 644 to 755
2021-06-15T13:42:20,696   changing mode of build/scripts-3.5/parse-genbank-flat-file.py from 644 to 755
2021-06-15T13:42:20,697   changing mode of build/scripts-3.5/position-summary.py from 644 to 755
2021-06-15T13:42:20,697   changing mode of build/scripts-3.5/print-blast-xml-for-derek.py from 644 to 755
2021-06-15T13:42:20,698   changing mode of build/scripts-3.5/print-blast-xml.py from 644 to 755
2021-06-15T13:42:20,699   changing mode of build/scripts-3.5/print-read-lengths.py from 644 to 755
2021-06-15T13:42:20,699   changing mode of build/scripts-3.5/proteins-to-pathogens.py from 644 to 755
2021-06-15T13:42:20,700   changing mode of build/scripts-3.5/proteins-to-pathogens-civ.py from 644 to 755
2021-06-15T13:42:20,701   changing mode of build/scripts-3.5/randomize-fasta.py from 644 to 755
2021-06-15T13:42:20,701   changing mode of build/scripts-3.5/read-blast-json.py from 644 to 755
2021-06-15T13:42:20,702   changing mode of build/scripts-3.5/read-blast-xml.py from 644 to 755
2021-06-15T13:42:20,703   changing mode of build/scripts-3.5/relabel-newick-tree.py from 644 to 755
2021-06-15T13:42:20,703   changing mode of build/scripts-3.5/run-bwa.py from 644 to 755
2021-06-15T13:42:20,704   changing mode of build/scripts-3.5/run-bowtie2.py from 644 to 755
2021-06-15T13:42:20,705   changing mode of build/scripts-3.5/sam-coverage.py from 644 to 755
2021-06-15T13:42:20,705   changing mode of build/scripts-3.5/sam-coverage-depth.py from 644 to 755
2021-06-15T13:42:20,706   changing mode of build/scripts-3.5/sam-to-fasta-alignment.py from 644 to 755
2021-06-15T13:42:20,706   changing mode of build/scripts-3.5/sam-reference-read-counts.py from 644 to 755
2021-06-15T13:42:20,707   changing mode of build/scripts-3.5/sam-references.py from 644 to 755
2021-06-15T13:42:20,707   changing mode of build/scripts-3.5/sff-to-fastq.py from 644 to 755
2021-06-15T13:42:20,708   changing mode of build/scripts-3.5/split-fasta-by-adaptors.py from 644 to 755
2021-06-15T13:42:20,708   changing mode of build/scripts-3.5/subset-protein-database.py from 644 to 755
2021-06-15T13:42:20,709   changing mode of build/scripts-3.5/summarize-fasta-bases.py from 644 to 755
2021-06-15T13:42:20,710   changing mode of build/scripts-3.5/summarize-reads.py from 644 to 755
2021-06-15T13:42:20,710   changing mode of build/scripts-3.5/translate.py from 644 to 755
2021-06-15T13:42:20,711   changing mode of build/scripts-3.5/trim-primers.py from 644 to 755
2021-06-15T13:42:20,711   changing mode of build/scripts-3.5/trim-reads.py from 644 to 755
2021-06-15T13:42:20,711   changing mode of build/scripts-3.5/write-htcondor-job-spec.py from 644 to 755
2021-06-15T13:42:20,712   installing to build/bdist.linux-armv7l/wheel
2021-06-15T13:42:20,712   running install
2021-06-15T13:42:20,713   running install_lib
2021-06-15T13:42:20,719   creating build/bdist.linux-armv7l
2021-06-15T13:42:20,720   creating build/bdist.linux-armv7l/wheel
2021-06-15T13:42:20,725   creating build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,727   copying build/lib/dark/fasta_ss.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,733   copying build/lib/dark/sequence.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,737   copying build/lib/dark/filter.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,741   copying build/lib/dark/distance.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,746   copying build/lib/dark/colors.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,751   copying build/lib/dark/aa.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,759   copying build/lib/dark/process.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,764   creating build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T13:42:20,766   copying build/lib/dark/diamond/conversion.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T13:42:20,770   copying build/lib/dark/diamond/hsp.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T13:42:20,774   copying build/lib/dark/diamond/sam.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T13:42:20,778   copying build/lib/dark/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T13:42:20,781   copying build/lib/dark/diamond/run.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T13:42:20,786   copying build/lib/dark/diamond/alignments.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T13:42:20,792   copying build/lib/dark/fastq.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,798   copying build/lib/dark/bowtie2.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,804   copying build/lib/dark/titles.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,810   copying build/lib/dark/summarize.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,816   copying build/lib/dark/fpcache.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,821   copying build/lib/dark/hsp.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,826   copying build/lib/dark/genbank.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,830   copying build/lib/dark/sam.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,836   copying build/lib/dark/aligners.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,839   copying build/lib/dark/analyze_reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,843   copying build/lib/dark/score.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,848   copying build/lib/dark/__init__.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,853   copying build/lib/dark/intervals.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,860   copying build/lib/dark/database.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,865   copying build/lib/dark/ncbidb.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,868   copying build/lib/dark/ipynb.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,870   copying build/lib/dark/codonDistance.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,873   copying build/lib/dark/alignments.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,878   copying build/lib/dark/graphics.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,883   copying build/lib/dark/consensus.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,889   creating build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T13:42:20,891   copying build/lib/dark/civ/__init__.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T13:42:20,895   copying build/lib/dark/civ/graphics.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T13:42:20,902   copying build/lib/dark/civ/proteins.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T13:42:20,911   copying build/lib/dark/civ/html.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T13:42:20,915   copying build/lib/dark/fasta.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,919   copying build/lib/dark/errors.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,922   copying build/lib/dark/btop.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,926   creating build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,929   copying build/lib/dark/blast/conversion.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,936   copying build/lib/dark/blast/params.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,942   copying build/lib/dark/blast/hsp.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,947   copying build/lib/dark/blast/hacks.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,952   copying build/lib/dark/blast/score.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,957   copying build/lib/dark/blast/__init__.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,961   copying build/lib/dark/blast/alignments.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,967   copying build/lib/dark/blast/records.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T13:42:20,971   copying build/lib/dark/local_align.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,975   copying build/lib/dark/taxonomy.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,980   copying build/lib/dark/mutations.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,985   copying build/lib/dark/reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:20,994   copying build/lib/dark/proteins.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,001   copying build/lib/dark/entrez.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,006   copying build/lib/dark/genomes.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,011   copying build/lib/dark/utils.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,015   copying build/lib/dark/html.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,019   copying build/lib/dark/cigar.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,022   copying build/lib/dark/orfs.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,026   copying build/lib/dark/features.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,031   copying build/lib/dark/dimension.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,036   copying build/lib/dark/baseimage.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,042   copying build/lib/dark/dna.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,048   copying build/lib/dark/simplify.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T13:42:21,052   running install_egg_info
2021-06-15T13:42:21,093   running egg_info
2021-06-15T13:42:21,094   writing requirements to dark_matter.egg-info/requires.txt
2021-06-15T13:42:21,096   writing dependency_links to dark_matter.egg-info/dependency_links.txt
2021-06-15T13:42:21,099   writing top-level names to dark_matter.egg-info/top_level.txt
2021-06-15T13:42:21,101   writing dark_matter.egg-info/PKG-INFO
2021-06-15T13:42:21,134   reading manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-06-15T13:42:21,168   writing manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-06-15T13:42:21,171   Copying dark_matter.egg-info to build/bdist.linux-armv7l/wheel/dark_matter-4.0.2-py3.5.egg-info
2021-06-15T13:42:21,190   running install_scripts
2021-06-15T13:42:21,306   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data
2021-06-15T13:42:21,307   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,309   copying build/scripts-3.5/extract-ORFs.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,313   copying build/scripts-3.5/trim-primers.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,316   copying build/scripts-3.5/create-newick-relabeling-output.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,319   copying build/scripts-3.5/fasta-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,323   copying build/scripts-3.5/pre-commit.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,326   copying build/scripts-3.5/fasta-join.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,329   copying build/scripts-3.5/graph-evalues.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,332   copying build/scripts-3.5/sff-to-fastq.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,337   copying build/scripts-3.5/find-hits.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,341   copying build/scripts-3.5/compare-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,347   copying build/scripts-3.5/dna-to-aa.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,352   copying build/scripts-3.5/fasta-split-by-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,357   copying build/scripts-3.5/convert-sam-to-fastq.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,360   copying build/scripts-3.5/ncbi-fetch-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,363   copying build/scripts-3.5/filter-hits-to-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,367   copying build/scripts-3.5/proteins-to-pathogens-civ.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,370   copying build/scripts-3.5/fasta-variable-sites.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,374   copying build/scripts-3.5/fasta-to-phylip.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,378   copying build/scripts-3.5/check-fasta-json-blast-consistency.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,383   copying build/scripts-3.5/convert-blast-xml-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,388   copying build/scripts-3.5/filter-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,393   copying build/scripts-3.5/get-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,411   copying build/scripts-3.5/alignments-per-read.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,414   copying build/scripts-3.5/print-blast-xml-for-derek.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,417   copying build/scripts-3.5/filter-fasta-by-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,441   copying build/scripts-3.5/download-genbank.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,451   copying build/scripts-3.5/alignment-panel-civ.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,457   copying build/scripts-3.5/convert-diamond-to-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,469   copying build/scripts-3.5/compare-consensuses.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,474   copying build/scripts-3.5/print-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,479   copying build/scripts-3.5/sam-reference-read-counts.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,499   copying build/scripts-3.5/fasta-ids.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,523   copying build/scripts-3.5/trim-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,542   copying build/scripts-3.5/print-read-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
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2021-06-15T13:42:21,562   copying build/scripts-3.5/summarize-fasta-bases.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,566   copying build/scripts-3.5/sam-coverage.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,569   copying build/scripts-3.5/filter-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,572   copying build/scripts-3.5/bit-score-to-e-value.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,575   copying build/scripts-3.5/make-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,578   copying build/scripts-3.5/get-hosts.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,581   copying build/scripts-3.5/fasta-identity-table.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,587   copying build/scripts-3.5/fasta-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,592   copying build/scripts-3.5/make-consensus.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,597   copying build/scripts-3.5/get-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,602   copying build/scripts-3.5/codon-distance.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,607   copying build/scripts-3.5/e-value-to-bit-score.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,612   copying build/scripts-3.5/make-fasta-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,616   copying build/scripts-3.5/position-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,621   copying build/scripts-3.5/sam-coverage-depth.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,625   copying build/scripts-3.5/get-features.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,628   copying build/scripts-3.5/subset-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,632   copying build/scripts-3.5/summarize-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,634   copying build/scripts-3.5/read-blast-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,637   copying build/scripts-3.5/fasta-sort.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,640   copying build/scripts-3.5/relabel-newick-tree.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,644   copying build/scripts-3.5/format-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,647   copying build/scripts-3.5/run-bwa.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,650   copying build/scripts-3.5/aa-to-properties.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,653   copying build/scripts-3.5/describe-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,656   copying build/scripts-3.5/fasta-diff.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,659   copying build/scripts-3.5/parse-genbank-flat-file.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts
2021-06-15T13:42:21,661   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/extract-ORFs.py to 755
2021-06-15T13:42:21,662   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/trim-primers.py to 755
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2021-06-15T13:42:21,663   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/fasta-sequences.py to 755
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2021-06-15T13:42:21,702   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/make-protein-database.py to 755
2021-06-15T13:42:21,702   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/get-hosts.py to 755
2021-06-15T13:42:21,703   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/fasta-identity-table.py to 755
2021-06-15T13:42:21,704   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/fasta-lengths.py to 755
2021-06-15T13:42:21,704   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/make-consensus.py to 755
2021-06-15T13:42:21,705   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/get-taxonomy.py to 755
2021-06-15T13:42:21,706   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/codon-distance.py to 755
2021-06-15T13:42:21,706   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/e-value-to-bit-score.py to 755
2021-06-15T13:42:21,707   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/make-fasta-database.py to 755
2021-06-15T13:42:21,708   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/position-summary.py to 755
2021-06-15T13:42:21,708   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/sam-coverage-depth.py to 755
2021-06-15T13:42:21,709   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/get-features.py to 755
2021-06-15T13:42:21,709   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/subset-protein-database.py to 755
2021-06-15T13:42:21,710   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/summarize-reads.py to 755
2021-06-15T13:42:21,710   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/read-blast-json.py to 755
2021-06-15T13:42:21,711   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/fasta-sort.py to 755
2021-06-15T13:42:21,712   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/relabel-newick-tree.py to 755
2021-06-15T13:42:21,712   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/format-fasta.py to 755
2021-06-15T13:42:21,713   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/run-bwa.py to 755
2021-06-15T13:42:21,713   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/aa-to-properties.py to 755
2021-06-15T13:42:21,713   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/describe-protein-database.py to 755
2021-06-15T13:42:21,714   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/fasta-diff.sh to 755
2021-06-15T13:42:21,715   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.data/scripts/parse-genbank-flat-file.py to 755
2021-06-15T13:42:21,782   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.2.dist-info/WHEEL
2021-06-15T13:42:22,572   Building wheel for dark-matter (setup.py): finished with status 'done'
2021-06-15T13:42:22,580   Created wheel for dark-matter: filename=dark_matter-4.0.2-py3-none-any.whl size=316930 sha256=d287b54ba38683ee56022d0f8c41bc9925e48a514932c75d3d6c82edf906062a
2021-06-15T13:42:22,580   Stored in directory: /tmp/pip-ephem-wheel-cache-bpapcmvx/wheels/28/b8/d4/e8658785cdfb79241d80beb7d45edefcf8aa55bac0cdb68fa4
2021-06-15T13:42:22,607 Successfully built dark-matter
2021-06-15T13:42:22,760 Removed build tracker: '/tmp/pip-req-tracker-frwwvzlv'