2021-06-15T14:20:33,775 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-06-15T14:20:34,403 Created temporary directory: /tmp/pip-ephem-wheel-cache-bqkt6pqe
2021-06-15T14:20:34,407 Created temporary directory: /tmp/pip-req-tracker-0iowi5b1
2021-06-15T14:20:34,408 Initialized build tracking at /tmp/pip-req-tracker-0iowi5b1
2021-06-15T14:20:34,408 Created build tracker: /tmp/pip-req-tracker-0iowi5b1
2021-06-15T14:20:34,408 Entered build tracker: /tmp/pip-req-tracker-0iowi5b1
2021-06-15T14:20:34,410 Created temporary directory: /tmp/pip-wheel-836nsj7e
2021-06-15T14:20:34,464 1 location(s) to search for versions of dark-matter:
2021-06-15T14:20:34,464 * https://pypi.org/simple/dark-matter/
2021-06-15T14:20:34,465 Fetching project page and analyzing links: https://pypi.org/simple/dark-matter/
2021-06-15T14:20:34,467 Getting page https://pypi.org/simple/dark-matter/
2021-06-15T14:20:34,470 Found index url https://pypi.org/simple
2021-06-15T14:20:35,096   Found link https://files.pythonhosted.org/packages/7a/5d/5704534d2e83673ec3c8534b39fe1a3f071291761d421803f6b2f04ca6b3/dark-matter-1.0.0.tar.gz#sha256=e915679610d0e94ca32b047d9ef8db6bb16aca43edbba1f7ea13d8f9a00b77d7 (from https://pypi.org/simple/dark-matter/), version: 1.0.0
2021-06-15T14:20:35,098   Found link https://files.pythonhosted.org/packages/4a/50/cc5fbbe75b550d6819af04e15ffc633d99b636f2e2d3c22ca4fc09ba2380/dark-matter-1.0.11.tar.gz#sha256=4157ac389269821b5c3a2de3b32922bf437df79e858f2ae8c7293479d393c90b (from https://pypi.org/simple/dark-matter/), version: 1.0.11
2021-06-15T14:20:35,098   Found link https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 (from https://pypi.org/simple/dark-matter/), version: 1.0.12
2021-06-15T14:20:35,099   Found link https://files.pythonhosted.org/packages/42/69/f0d13d1e43ec50d1ca85b70c27cc5333f85186668700544a7661c4d6d374/dark-matter-1.0.13.tar.gz#sha256=4b061448407711cab985c60762244028d74b32a322d7329a63138e4080d110d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.13
2021-06-15T14:20:35,100   Found link https://files.pythonhosted.org/packages/30/5a/9c56b0639b13c2c78cad8ac304e9c5d834eed0cab07d0dcd780b7be47249/dark-matter-1.0.16.tar.gz#sha256=c0c11585b9a71c47aa248794779111a9ab30c48e32e17540f95347d98ce116a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.16
2021-06-15T14:20:35,101   Found link https://files.pythonhosted.org/packages/26/8d/eb629def26e051253c4070e70dfc7c8258d513b2685fe4e92bb975b6e613/dark-matter-1.0.19.tar.gz#sha256=4944ba9c898e0b956b6a8c0b8e78e5aa91579ac469885c61e70d71e89f92883d (from https://pypi.org/simple/dark-matter/), version: 1.0.19
2021-06-15T14:20:35,102   Found link https://files.pythonhosted.org/packages/6d/6f/755f4b72e91ce15571d5884761d34627eba8dc173005bc8d41a2e4d2ec81/dark-matter-1.0.27.tar.gz#sha256=70b765fdc0932137cb1ee2b9183018261c218fd27c87a3f3ab5fabb93a9d0e3c (from https://pypi.org/simple/dark-matter/), version: 1.0.27
2021-06-15T14:20:35,103   Found link https://files.pythonhosted.org/packages/c1/41/a8cb27f9a68dd388473a594c0a5cb162fb1518d16197c357ec3617e9631c/dark-matter-1.0.32.tar.gz#sha256=405b6a4a51ac4c1660435c882fb548d1e6ad1a889779b3893bddf5f876732eef (from https://pypi.org/simple/dark-matter/), version: 1.0.32
2021-06-15T14:20:35,103   Found link https://files.pythonhosted.org/packages/26/f5/ea2b1d090cd00bb769d4e07cc4b697373c58dac65a52cf442a4f60a833ba/dark-matter-1.0.34.tar.gz#sha256=8fe1d83a0b0476164c5a4ca8197890e1936ed0d66a689870a71676a14f671539 (from https://pypi.org/simple/dark-matter/), version: 1.0.34
2021-06-15T14:20:35,104   Found link https://files.pythonhosted.org/packages/1d/a3/954c4ab15080556dbb33a1c2053ce9028b51cb160099978332b9252b5f93/dark-matter-1.0.36.tar.gz#sha256=9f639deedd5d4e4da0276c9a6780288c5d78e95b0c5b69d08b312ed10cc10d25 (from https://pypi.org/simple/dark-matter/), version: 1.0.36
2021-06-15T14:20:35,105   Found link https://files.pythonhosted.org/packages/fd/f7/352dcf1f8fb13001175a73acb52fff4bc20760300f87459d7e1e967823a1/dark-matter-1.0.38.tar.gz#sha256=b506f4177d9334da17c7fdd2054944851b96c3872be6d00cd5ece2de2ddc7d82 (from https://pypi.org/simple/dark-matter/), version: 1.0.38
2021-06-15T14:20:35,106   Found link https://files.pythonhosted.org/packages/17/94/5d0c424a52cc3d16793cef2a6b38a8a3542c4bda072c49d61efd18a1ec60/dark-matter-1.0.40.tar.gz#sha256=6e38036fc94ef7817c18d607b937b916ef1caafe40fe072d4748306b2e646a1f (from https://pypi.org/simple/dark-matter/), version: 1.0.40
2021-06-15T14:20:35,107   Found link https://files.pythonhosted.org/packages/4c/d7/9fa11fcb1f9923e3e980f1b493791ca3fbe6920a68a939971fb1eb333d05/dark-matter-1.0.41.tar.gz#sha256=e6e0364aa69a1fef4621e7d016839a3dffbcddff5d575ba4ee7f4af5cebd754d (from https://pypi.org/simple/dark-matter/), version: 1.0.41
2021-06-15T14:20:35,108   Found link https://files.pythonhosted.org/packages/1b/bb/9a2bffcc74c3bb8c2f45106443174a74dbe3424e45eb483ba7bf72da1fe2/dark-matter-1.0.42.tar.gz#sha256=2540312ed60fed3f5a52b5ec60409e712c8a562569baa132be6ab0c53edbec83 (from https://pypi.org/simple/dark-matter/), version: 1.0.42
2021-06-15T14:20:35,108   Found link https://files.pythonhosted.org/packages/e2/dd/cb0a17ce78d39d3b6d6dc93f54c49069b722569042312f7044143a67af30/dark-matter-1.0.43.tar.gz#sha256=17548e06b695864df72afb4e6664261333612b991373745f4e68f99ed48ace5f (from https://pypi.org/simple/dark-matter/), version: 1.0.43
2021-06-15T14:20:35,109   Found link https://files.pythonhosted.org/packages/88/ee/c6e7d4142ee1baca46ff0d7f295b7d5a4059648c815de4223f873f17a448/dark-matter-1.0.44.tar.gz#sha256=468d2be2ad00ddcdfafe52f09a6a8971b40964e816fdb95de2772d32879d3fc5 (from https://pypi.org/simple/dark-matter/), version: 1.0.44
2021-06-15T14:20:35,110   Found link https://files.pythonhosted.org/packages/7e/71/19001567a982f1ea235095e6f2042990e0666c343bfd985b2c2b8a6a6edc/dark-matter-1.0.45.tar.gz#sha256=b60e397a82b3183fae2cdee32ac92f43f4533bcb5a7683d5fc3e58dd6ceee4fd (from https://pypi.org/simple/dark-matter/), version: 1.0.45
2021-06-15T14:20:35,111   Found link https://files.pythonhosted.org/packages/9b/71/0395a4c77fc9443e4b1c8d6d3787d527c2d06ecf56c75db9779bb602d594/dark-matter-1.0.46.tar.gz#sha256=66aaa9872db60c407b047f5e997c8155fe0626df9222b251a6f65b15ca4d3423 (from https://pypi.org/simple/dark-matter/), version: 1.0.46
2021-06-15T14:20:35,112   Found link https://files.pythonhosted.org/packages/85/3b/b68351e5280d2f65b26ca3e225a5a0385d921a6d25cef62563eeaec42343/dark-matter-1.0.47.tar.gz#sha256=b51c372b06fe94fcc93f8795aa5d2b2a547108934cc5c429e89972cdea153baf (from https://pypi.org/simple/dark-matter/), version: 1.0.47
2021-06-15T14:20:35,112   Found link https://files.pythonhosted.org/packages/fb/4c/6e27c41b817fc86240a956472978b226008da91e8c2b2b5dd991091c3a2d/dark-matter-1.0.48.tar.gz#sha256=e9ca7aad5b5631658d2ab154108568faa6196f7cea8dfaef1881d0013a3c59bd (from https://pypi.org/simple/dark-matter/), version: 1.0.48
2021-06-15T14:20:35,113   Found link https://files.pythonhosted.org/packages/07/65/1253b1fcd6c75fbbc19eee09982ec62023742959583d6687c666befffb71/dark-matter-1.0.49.tar.gz#sha256=7fe2af86f08e9e2416869c8fa571fc79b5a6965d4e2e9624536984a6ede94d5e (from https://pypi.org/simple/dark-matter/), version: 1.0.49
2021-06-15T14:20:35,114   Found link https://files.pythonhosted.org/packages/ac/93/e94fa7a2455aa54ebc294bb5bd93c11aca3c461073aee1fab28b4ee380ae/dark-matter-1.0.50.tar.gz#sha256=cd9ce5690ff46e8a27b17505dc500d0dc065bb403d6aa731615fbcfa0e9ecb50 (from https://pypi.org/simple/dark-matter/), version: 1.0.50
2021-06-15T14:20:35,115   Found link https://files.pythonhosted.org/packages/b9/ce/7d74daae572ebb32ffdbd439440361f5bf39eb9f9d0f55654878cbd7cbb2/dark-matter-1.0.51.tar.gz#sha256=ca7762302eb529ec15dbc0bba35397dc018cb3b43b371b02495ba1caa8fc6fe2 (from https://pypi.org/simple/dark-matter/), version: 1.0.51
2021-06-15T14:20:35,116   Found link https://files.pythonhosted.org/packages/cd/fb/8ff473df5992d3cdfc57151ff5595561c42fff343fcc01c76f3b95cd1eb9/dark-matter-1.0.52.tar.gz#sha256=7c5cadd1c74c4c85d55ec808f2ecd1a86abf726b7f3dc4b8755a32dc81a57094 (from https://pypi.org/simple/dark-matter/), version: 1.0.52
2021-06-15T14:20:35,116   Found link https://files.pythonhosted.org/packages/d4/a7/8e4a7fc079ce3324a605902fb7fe865ab846ba3376408987680cc68703c7/dark-matter-1.0.53.tar.gz#sha256=c06386be8fc1f85e76fc6f7c6b8ea6597503a9c238e5368e0975f18ea9fe3f6a (from https://pypi.org/simple/dark-matter/), version: 1.0.53
2021-06-15T14:20:35,117   Found link https://files.pythonhosted.org/packages/a8/50/55d45de9c1903904647e651a955b56dff452d61f9e095a5004a149ab2eca/dark-matter-1.0.54.tar.gz#sha256=cb4fefda8208eb0d40c4b172c30286b4be960018e89c89aacb94f177cbd0a77a (from https://pypi.org/simple/dark-matter/), version: 1.0.54
2021-06-15T14:20:35,118   Found link https://files.pythonhosted.org/packages/47/41/cc272f599662d184f754abc67ee763ac9da02c5d9ef5d1155effe67d132f/dark-matter-1.0.55.tar.gz#sha256=d1b4537860411417b98b32252f8a363623c263464c32d994cd442de74e36d4d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.55
2021-06-15T14:20:35,119   Found link https://files.pythonhosted.org/packages/d3/d8/250e7506219460c7da81f6f51bf93cce13d21b461392dcbfa1311e504a95/dark-matter-1.0.56.tar.gz#sha256=d5cbddab4a2b8cc948329f46660259c2bb30b866446ddfc12e8c6b8ddc9822ff (from https://pypi.org/simple/dark-matter/), version: 1.0.56
2021-06-15T14:20:35,120   Found link https://files.pythonhosted.org/packages/81/c7/3bf4ec17c4f0e02ca7741f7ede49d58680f12b48a4a7350031ffe8b38ba1/dark-matter-1.0.57.tar.gz#sha256=3d33c771486b56c8a4dd10fb70f91e4c0ce1d279d05cbdf6dac92cceffb35809 (from https://pypi.org/simple/dark-matter/), version: 1.0.57
2021-06-15T14:20:35,120   Found link https://files.pythonhosted.org/packages/f1/d5/6e02cb418664b484f16ea42b60a86add44acf56dda4875001528957c27b2/dark-matter-1.0.58.tar.gz#sha256=6a9e75658cacc7ae7e9926d0debd5605e15e5761452455e4f65c96b3cd947c6b (from https://pypi.org/simple/dark-matter/), version: 1.0.58
2021-06-15T14:20:35,121   Found link https://files.pythonhosted.org/packages/5a/d3/a69ed2feeac3afcb852a8bcce6cadd5b541cd78de3756f0519a62ca29371/dark-matter-1.0.59.tar.gz#sha256=1f0c71e01cce5ca62b1599c974ff24b8b211349f880c365ecbdce369c6877280 (from https://pypi.org/simple/dark-matter/), version: 1.0.59
2021-06-15T14:20:35,122   Found link https://files.pythonhosted.org/packages/68/70/96bd4a89d1c5f40e05d734be94ae1571be35c0b4c4e19e22c0be893c9e1c/dark-matter-1.0.60.tar.gz#sha256=933a4cc3f34ed03198cacedaab9cc0915402bfff0ad238a0f879c7b246243f02 (from https://pypi.org/simple/dark-matter/), version: 1.0.60
2021-06-15T14:20:35,124   Found link https://files.pythonhosted.org/packages/55/52/ab50ff5d12bb5efd1171a964a4f5baa03edb0091dfa5c79af08fbbe4da16/dark-matter-1.0.61.tar.gz#sha256=09e5bdfd05c954d34fc87541f61a416169ae53daea1a22723de915a9f50ea9e4 (from https://pypi.org/simple/dark-matter/), version: 1.0.61
2021-06-15T14:20:35,124   Found link https://files.pythonhosted.org/packages/ab/de/cc9a342e642f66e60c8ff98d1786229d5cfcfb0306158f0c19ef61059303/dark-matter-1.0.62.tar.gz#sha256=6f7347e0923abd2eb2118862a03966c5204262e5d496e11900de3aed43724265 (from https://pypi.org/simple/dark-matter/), version: 1.0.62
2021-06-15T14:20:35,125   Found link https://files.pythonhosted.org/packages/cd/a5/713b8a9f25437fafe2a34291ca34f945c9e1394c2e600f73e5abd8e3282e/dark-matter-1.0.63.tar.gz#sha256=fca60020cce6b249f61f6ae5e268dbd20f71a2d257bb668c84313ca29d6873b1 (from https://pypi.org/simple/dark-matter/), version: 1.0.63
2021-06-15T14:20:35,126   Found link https://files.pythonhosted.org/packages/77/fe/320a21e0c4c116bd28487af7156a9937a90dcc44f70c4f720267e9b14291/dark-matter-1.0.64.tar.gz#sha256=d1c1764b08f3fbdf71f46a5f9acbe0deadb96d5af5b4b99d8b19e13e4abe9e3d (from https://pypi.org/simple/dark-matter/), version: 1.0.64
2021-06-15T14:20:35,127   Found link https://files.pythonhosted.org/packages/a0/08/9be54a6570a6acf6f87d5ca8ff9f91660697fc32212d0be3601785e796b9/dark-matter-1.0.65.tar.gz#sha256=1332fafc881be70d395aa69ed174c0036941f2d4f8e170f24ba6c0fa14397de6 (from https://pypi.org/simple/dark-matter/), version: 1.0.65
2021-06-15T14:20:35,128   Found link https://files.pythonhosted.org/packages/7b/61/46caedf674111789641d78a4252b26d1ea43d3d8c77f906b3abc7c638acc/dark-matter-1.0.66.tar.gz#sha256=a0ad6f3e8afe8294c1aa5011577533334d2a6cbb16eaaa9b48a451fe0a9db293 (from https://pypi.org/simple/dark-matter/), version: 1.0.66
2021-06-15T14:20:35,128   Found link https://files.pythonhosted.org/packages/97/54/fc8129e31460a4007b2d328e37efeb55a3488b7a7a34592e0c738ac27079/dark-matter-1.0.67.tar.gz#sha256=709dbe5d0c6df732587900ea0ee3a8508fd43a37d7aff3ec5387bbee7d7917cd (from https://pypi.org/simple/dark-matter/), version: 1.0.67
2021-06-15T14:20:35,129   Found link https://files.pythonhosted.org/packages/e5/33/890848c35cb392c57712943c79ffe317ce401bd2db2a616637719f8c5522/dark-matter-1.0.68.tar.gz#sha256=5426893dee726d1f3da0d38176f4489d983e698b36586b2a5d4030ccfd38ae9f (from https://pypi.org/simple/dark-matter/), version: 1.0.68
2021-06-15T14:20:35,130   Found link https://files.pythonhosted.org/packages/c2/23/5e4253583920bada6ee2f5204fbaf8a745527f8ba5c585ac8891fa959991/dark-matter-1.0.69.tar.gz#sha256=494ab515566d76d337f7b25186921029e01e84460ae1f2d81c355a9ae135a18c (from https://pypi.org/simple/dark-matter/), version: 1.0.69
2021-06-15T14:20:35,131   Found link https://files.pythonhosted.org/packages/3d/6a/1cf82dcc5f77ac300a3ee4c1fce72edad81280795e42f0da80b67b3a1838/dark-matter-1.0.70.tar.gz#sha256=f74facc816c78353ee9cdeeac334e9e03d05c38cc381588def6443125fe7ff17 (from https://pypi.org/simple/dark-matter/), version: 1.0.70
2021-06-15T14:20:35,132   Found link https://files.pythonhosted.org/packages/64/9a/ace6de00719320e68408c58f3abe036645a29901f17e3e1cd356260cb9f5/dark-matter-1.0.71.tar.gz#sha256=f0ed0a32bf00786a18d3b50596ad79ec24f01ed3fa9d56f36efec9db58a750a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.71
2021-06-15T14:20:35,133   Found link https://files.pythonhosted.org/packages/94/d0/a1e5aabab8ad66683757b3b0569d672da3528a5a8619f830f33c2d6bb179/dark-matter-1.0.72.tar.gz#sha256=3cab3d9241f6fccf0e1a88ed3f572b90bd296c41810b85b49054ba4238742061 (from https://pypi.org/simple/dark-matter/), version: 1.0.72
2021-06-15T14:20:35,133   Found link https://files.pythonhosted.org/packages/a2/1a/f7d17f7e7d196b1fb5382a27adc6ae61bbc4c47ad812c9e78de890b61743/dark-matter-1.0.73.tar.gz#sha256=ef4359ea0a02e00b3f1b06754da34fb6cfbe030ecd3976dac50841c0ae46c062 (from https://pypi.org/simple/dark-matter/), version: 1.0.73
2021-06-15T14:20:35,134   Found link https://files.pythonhosted.org/packages/8e/dc/f8fbeb00d964a029f3e444ed65ba9ca0f69e83c4b19d93efb858ac9d67cf/dark-matter-1.0.74.tar.gz#sha256=90c2fc0dcc27bbd558041ae982768c630c602360754f3e07577c2711966c1fb7 (from https://pypi.org/simple/dark-matter/), version: 1.0.74
2021-06-15T14:20:35,135   Found link https://files.pythonhosted.org/packages/26/50/60d51f6d26ec912a10cd058c4221c4794813080bcccd2f5af993a2bfe973/dark-matter-1.0.75.tar.gz#sha256=9db8994744be84b8d67035bff720b4b8330e8682339d3bef01a857210d400c50 (from https://pypi.org/simple/dark-matter/), version: 1.0.75
2021-06-15T14:20:35,136   Found link https://files.pythonhosted.org/packages/03/bb/45b48f894b2b3f2a08e9e3c3c07ce133db94e91a363688f3ab9ce4969d80/dark-matter-1.0.76.tar.gz#sha256=940772c257a0f785f0f5efa53a7075692b5fa889a6c1d3432e17929fc30a1179 (from https://pypi.org/simple/dark-matter/), version: 1.0.76
2021-06-15T14:20:35,137   Found link https://files.pythonhosted.org/packages/5a/b2/63dea9b0ab7517190dd58b390cd9f0c007da74ad33c1ce37a74e6640e62c/dark-matter-1.0.77.tar.gz#sha256=e027b5a28158d9e74d712bdc4651580fe3c14be15a124a7a7634523e2cafd842 (from https://pypi.org/simple/dark-matter/), version: 1.0.77
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2021-06-15T14:20:35,313   Found link https://files.pythonhosted.org/packages/fe/74/37ca77e38cc0080fbe164321e7ab6be1552960f966c11c12ba6a138c1cdb/dark-matter-3.2.3.tar.gz#sha256=51d99ef9b8c7628613fed3519fac86d2575c56f4977150d0ec017a440b869692 (from https://pypi.org/simple/dark-matter/), version: 3.2.3
2021-06-15T14:20:35,314   Found link https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 (from https://pypi.org/simple/dark-matter/), version: 3.2.4
2021-06-15T14:20:35,314   Found link https://files.pythonhosted.org/packages/95/55/bb9433858a72e5030fe4579502698e18fe9f21ec51f4d34a9f3f33913aed/dark-matter-3.2.5.tar.gz#sha256=1a31e2be7d17f7a47cc07b566ed2a822559fb09072efda9827666ba83d560c41 (from https://pypi.org/simple/dark-matter/), version: 3.2.5
2021-06-15T14:20:35,315   Found link https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a (from https://pypi.org/simple/dark-matter/), version: 3.2.6
2021-06-15T14:20:35,316   Found link https://files.pythonhosted.org/packages/91/46/1547ccfdd762ae0eca10c8781419157a1350f009d02f1eaf0f02f4666d43/dark-matter-4.0.1.tar.gz#sha256=0bc78eb30abeb495a923f91ca67042a947c142b0bfef173c9c04168521d596bb (from https://pypi.org/simple/dark-matter/), version: 4.0.1
2021-06-15T14:20:35,317   Found link https://files.pythonhosted.org/packages/39/dc/3679eaa104a9298af74106ead1b3de2e8f4105c9762d489af4ad9f31c177/dark-matter-4.0.2.tar.gz#sha256=d7c6f9fc10eafea5539e25c54752ad038d69111889588166b9c1ea34c2fcc117 (from https://pypi.org/simple/dark-matter/), version: 4.0.2
2021-06-15T14:20:35,318   Found link https://files.pythonhosted.org/packages/89/97/e6498f8e9ec143776ae410e0ffb0c6167e66178e338662a8b159f65f8f27/dark-matter-4.0.3.tar.gz#sha256=781729df875c97b926a1e754892012ee23fe4da008e34ba596255006f2591bf9 (from https://pypi.org/simple/dark-matter/), version: 4.0.3
2021-06-15T14:20:35,447 Given no hashes to check 1 links for project 'dark-matter': discarding no candidates
2021-06-15T14:20:35,482 Collecting dark-matter==4.0.3
2021-06-15T14:20:35,485   Created temporary directory: /tmp/pip-unpack-a183qqom
2021-06-15T14:20:35,817   Downloading dark-matter-4.0.3.tar.gz (332 kB)
2021-06-15T14:20:37,031   Added dark-matter==4.0.3 from https://files.pythonhosted.org/packages/89/97/e6498f8e9ec143776ae410e0ffb0c6167e66178e338662a8b159f65f8f27/dark-matter-4.0.3.tar.gz#sha256=781729df875c97b926a1e754892012ee23fe4da008e34ba596255006f2591bf9 to build tracker '/tmp/pip-req-tracker-0iowi5b1'
2021-06-15T14:20:37,033     Running setup.py (path:/tmp/pip-wheel-836nsj7e/dark-matter_1c77c12723434ab68c570f3cb1741256/setup.py) egg_info for package dark-matter
2021-06-15T14:20:37,035     Created temporary directory: /tmp/pip-pip-egg-info-yy63wnwu
2021-06-15T14:20:37,035     Running command python setup.py egg_info
2021-06-15T14:20:39,262     running egg_info
2021-06-15T14:20:39,267     creating /tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info
2021-06-15T14:20:39,270     writing top-level names to /tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info/top_level.txt
2021-06-15T14:20:39,272     writing dependency_links to /tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info/dependency_links.txt
2021-06-15T14:20:39,273     writing /tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info/PKG-INFO
2021-06-15T14:20:39,277     writing requirements to /tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info/requires.txt
2021-06-15T14:20:39,280     writing manifest file '/tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info/SOURCES.txt'
2021-06-15T14:20:39,641     reading manifest file '/tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info/SOURCES.txt'
2021-06-15T14:20:39,671     writing manifest file '/tmp/pip-pip-egg-info-yy63wnwu/dark_matter.egg-info/SOURCES.txt'
2021-06-15T14:20:39,796   Source in /tmp/pip-wheel-836nsj7e/dark-matter_1c77c12723434ab68c570f3cb1741256 has version 4.0.3, which satisfies requirement dark-matter==4.0.3 from https://files.pythonhosted.org/packages/89/97/e6498f8e9ec143776ae410e0ffb0c6167e66178e338662a8b159f65f8f27/dark-matter-4.0.3.tar.gz#sha256=781729df875c97b926a1e754892012ee23fe4da008e34ba596255006f2591bf9
2021-06-15T14:20:39,798   Removed dark-matter==4.0.3 from https://files.pythonhosted.org/packages/89/97/e6498f8e9ec143776ae410e0ffb0c6167e66178e338662a8b159f65f8f27/dark-matter-4.0.3.tar.gz#sha256=781729df875c97b926a1e754892012ee23fe4da008e34ba596255006f2591bf9 from build tracker '/tmp/pip-req-tracker-0iowi5b1'
2021-06-15T14:20:39,805 Created temporary directory: /tmp/pip-unpack-f7s0geeh
2021-06-15T14:20:39,806 Building wheels for collected packages: dark-matter
2021-06-15T14:20:39,812   Created temporary directory: /tmp/pip-wheel-4jr7b6p5
2021-06-15T14:20:39,813   Building wheel for dark-matter (setup.py): started
2021-06-15T14:20:39,814   Destination directory: /tmp/pip-wheel-4jr7b6p5
2021-06-15T14:20:39,814   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-836nsj7e/dark-matter_1c77c12723434ab68c570f3cb1741256/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-836nsj7e/dark-matter_1c77c12723434ab68c570f3cb1741256/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4jr7b6p5
2021-06-15T14:20:41,846   running bdist_wheel
2021-06-15T14:20:41,860   running build
2021-06-15T14:20:41,861   running build_py
2021-06-15T14:20:42,154   creating build
2021-06-15T14:20:42,155   creating build/lib
2021-06-15T14:20:42,156   creating build/lib/dark
2021-06-15T14:20:42,158   copying dark/ncbidb.py -> build/lib/dark
2021-06-15T14:20:42,161   copying dark/genbank.py -> build/lib/dark
2021-06-15T14:20:42,164   copying dark/fasta.py -> build/lib/dark
2021-06-15T14:20:42,168   copying dark/__init__.py -> build/lib/dark
2021-06-15T14:20:42,171   copying dark/local_align.py -> build/lib/dark
2021-06-15T14:20:42,175   copying dark/dimension.py -> build/lib/dark
2021-06-15T14:20:42,178   copying dark/hsp.py -> build/lib/dark
2021-06-15T14:20:42,182   copying dark/summarize.py -> build/lib/dark
2021-06-15T14:20:42,184   copying dark/dna.py -> build/lib/dark
2021-06-15T14:20:42,188   copying dark/proteins.py -> build/lib/dark
2021-06-15T14:20:42,193   copying dark/btop.py -> build/lib/dark
2021-06-15T14:20:42,196   copying dark/orfs.py -> build/lib/dark
2021-06-15T14:20:42,199   copying dark/taxonomy.py -> build/lib/dark
2021-06-15T14:20:42,203   copying dark/baseimage.py -> build/lib/dark
2021-06-15T14:20:42,206   copying dark/bowtie2.py -> build/lib/dark
2021-06-15T14:20:42,210   copying dark/analyze_reads.py -> build/lib/dark
2021-06-15T14:20:42,213   copying dark/errors.py -> build/lib/dark
2021-06-15T14:20:42,216   copying dark/fasta_ss.py -> build/lib/dark
2021-06-15T14:20:42,218   copying dark/database.py -> build/lib/dark
2021-06-15T14:20:42,221   copying dark/distance.py -> build/lib/dark
2021-06-15T14:20:42,224   copying dark/intervals.py -> build/lib/dark
2021-06-15T14:20:42,228   copying dark/aligners.py -> build/lib/dark
2021-06-15T14:20:42,232   copying dark/mutations.py -> build/lib/dark
2021-06-15T14:20:42,237   copying dark/sam.py -> build/lib/dark
2021-06-15T14:20:42,244   copying dark/aa.py -> build/lib/dark
2021-06-15T14:20:42,250   copying dark/html.py -> build/lib/dark
2021-06-15T14:20:42,254   copying dark/sequence.py -> build/lib/dark
2021-06-15T14:20:42,257   copying dark/utils.py -> build/lib/dark
2021-06-15T14:20:42,260   copying dark/titles.py -> build/lib/dark
2021-06-15T14:20:42,264   copying dark/features.py -> build/lib/dark
2021-06-15T14:20:42,267   copying dark/reads.py -> build/lib/dark
2021-06-15T14:20:42,273   copying dark/fastq.py -> build/lib/dark
2021-06-15T14:20:42,276   copying dark/filter.py -> build/lib/dark
2021-06-15T14:20:42,280   copying dark/alignments.py -> build/lib/dark
2021-06-15T14:20:42,284   copying dark/consensus.py -> build/lib/dark
2021-06-15T14:20:42,287   copying dark/cigar.py -> build/lib/dark
2021-06-15T14:20:42,290   copying dark/simplify.py -> build/lib/dark
2021-06-15T14:20:42,293   copying dark/process.py -> build/lib/dark
2021-06-15T14:20:42,296   copying dark/entrez.py -> build/lib/dark
2021-06-15T14:20:42,299   copying dark/fpcache.py -> build/lib/dark
2021-06-15T14:20:42,302   copying dark/score.py -> build/lib/dark
2021-06-15T14:20:42,305   copying dark/ipynb.py -> build/lib/dark
2021-06-15T14:20:42,307   copying dark/graphics.py -> build/lib/dark
2021-06-15T14:20:42,312   copying dark/codonDistance.py -> build/lib/dark
2021-06-15T14:20:42,315   copying dark/genomes.py -> build/lib/dark
2021-06-15T14:20:42,319   copying dark/colors.py -> build/lib/dark
2021-06-15T14:20:42,323   creating build/lib/dark/blast
2021-06-15T14:20:42,324   copying dark/blast/__init__.py -> build/lib/dark/blast
2021-06-15T14:20:42,327   copying dark/blast/conversion.py -> build/lib/dark/blast
2021-06-15T14:20:42,331   copying dark/blast/hsp.py -> build/lib/dark/blast
2021-06-15T14:20:42,334   copying dark/blast/params.py -> build/lib/dark/blast
2021-06-15T14:20:42,337   copying dark/blast/hacks.py -> build/lib/dark/blast
2021-06-15T14:20:42,340   copying dark/blast/alignments.py -> build/lib/dark/blast
2021-06-15T14:20:42,343   copying dark/blast/records.py -> build/lib/dark/blast
2021-06-15T14:20:42,346   copying dark/blast/score.py -> build/lib/dark/blast
2021-06-15T14:20:42,351   creating build/lib/dark/diamond
2021-06-15T14:20:42,353   copying dark/diamond/__init__.py -> build/lib/dark/diamond
2021-06-15T14:20:42,357   copying dark/diamond/conversion.py -> build/lib/dark/diamond
2021-06-15T14:20:42,363   copying dark/diamond/hsp.py -> build/lib/dark/diamond
2021-06-15T14:20:42,368   copying dark/diamond/sam.py -> build/lib/dark/diamond
2021-06-15T14:20:42,373   copying dark/diamond/run.py -> build/lib/dark/diamond
2021-06-15T14:20:42,376   copying dark/diamond/alignments.py -> build/lib/dark/diamond
2021-06-15T14:20:42,380   creating build/lib/dark/civ
2021-06-15T14:20:42,381   copying dark/civ/__init__.py -> build/lib/dark/civ
2021-06-15T14:20:42,384   copying dark/civ/proteins.py -> build/lib/dark/civ
2021-06-15T14:20:42,393   copying dark/civ/html.py -> build/lib/dark/civ
2021-06-15T14:20:42,398   copying dark/civ/graphics.py -> build/lib/dark/civ
2021-06-15T14:20:42,418   running build_scripts
2021-06-15T14:20:42,419   creating build/scripts-3.5
2021-06-15T14:20:42,421   copying and adjusting bin/aa-info.py -> build/scripts-3.5
2021-06-15T14:20:42,424   copying and adjusting bin/aa-to-dna.py -> build/scripts-3.5
2021-06-15T14:20:42,427   copying and adjusting bin/aa-to-properties.py -> build/scripts-3.5
2021-06-15T14:20:42,429   copying and adjusting bin/adaptor-distances.py -> build/scripts-3.5
2021-06-15T14:20:42,431   copying and adjusting bin/alignment-panel-civ.py -> build/scripts-3.5
2021-06-15T14:20:42,436   copying and adjusting bin/alignments-per-read.py -> build/scripts-3.5
2021-06-15T14:20:42,438   copying and adjusting bin/bit-score-to-e-value.py -> build/scripts-3.5
2021-06-15T14:20:42,441   copying and adjusting bin/cat-json-blast-records.py -> build/scripts-3.5
2021-06-15T14:20:42,443   copying and adjusting bin/check-fasta-json-blast-consistency.py -> build/scripts-3.5
2021-06-15T14:20:42,446   copying and adjusting bin/codon-distance.py -> build/scripts-3.5
2021-06-15T14:20:42,449   copying and adjusting bin/compare-consensuses.py -> build/scripts-3.5
2021-06-15T14:20:42,453   copying and adjusting bin/compare-sequences.py -> build/scripts-3.5
2021-06-15T14:20:42,459   copying and adjusting bin/convert-blast-xml-to-json.py -> build/scripts-3.5
2021-06-15T14:20:42,463   copying and adjusting bin/convert-diamond-to-json.py -> build/scripts-3.5
2021-06-15T14:20:42,467   copying and adjusting bin/convert-diamond-to-sam.py -> build/scripts-3.5
2021-06-15T14:20:42,472   copying bin/convert-sam-to-fastq.sh -> build/scripts-3.5
2021-06-15T14:20:42,476   copying and adjusting bin/create-newick-relabeling-output.py -> build/scripts-3.5
2021-06-15T14:20:42,479   copying and adjusting bin/dark-matter-version.py -> build/scripts-3.5
2021-06-15T14:20:42,481   copying and adjusting bin/describe-protein-database.py -> build/scripts-3.5
2021-06-15T14:20:42,484   copying and adjusting bin/dna-to-aa.py -> build/scripts-3.5
2021-06-15T14:20:42,486   copying bin/download-genbank.sh -> build/scripts-3.5
2021-06-15T14:20:42,490   copying and adjusting bin/e-value-to-bit-score.py -> build/scripts-3.5
2021-06-15T14:20:42,494   copying and adjusting bin/extract-ORFs.py -> build/scripts-3.5
2021-06-15T14:20:42,499   copying and adjusting bin/fasta-base-indices.py -> build/scripts-3.5
2021-06-15T14:20:42,503   copying and adjusting bin/fasta-count.py -> build/scripts-3.5
2021-06-15T14:20:42,508   copying bin/fasta-diff.sh -> build/scripts-3.5
2021-06-15T14:20:42,513   copying and adjusting bin/fasta-identity-table.py -> build/scripts-3.5
2021-06-15T14:20:42,517   copying and adjusting bin/fasta-ids.py -> build/scripts-3.5
2021-06-15T14:20:42,520   copying and adjusting bin/fasta-join.py -> build/scripts-3.5
2021-06-15T14:20:42,523   copying and adjusting bin/fasta-lengths.py -> build/scripts-3.5
2021-06-15T14:20:42,525   copying and adjusting bin/fasta-sequences.py -> build/scripts-3.5
2021-06-15T14:20:42,527   copying and adjusting bin/fasta-sort.py -> build/scripts-3.5
2021-06-15T14:20:42,530   copying and adjusting bin/fasta-split-by-id.py -> build/scripts-3.5
2021-06-15T14:20:42,534   copying and adjusting bin/fasta-subset.py -> build/scripts-3.5
2021-06-15T14:20:42,538   copying and adjusting bin/fasta-subtraction.py -> build/scripts-3.5
2021-06-15T14:20:42,542   copying and adjusting bin/fasta-to-phylip.py -> build/scripts-3.5
2021-06-15T14:20:42,546   copying and adjusting bin/fasta-variable-sites.py -> build/scripts-3.5
2021-06-15T14:20:42,551   copying and adjusting bin/filter-fasta-by-complexity.py -> build/scripts-3.5
2021-06-15T14:20:42,555   copying and adjusting bin/filter-fasta-by-taxonomy.py -> build/scripts-3.5
2021-06-15T14:20:42,559   copying and adjusting bin/filter-fasta.py -> build/scripts-3.5
2021-06-15T14:20:42,562   copying and adjusting bin/filter-hits-to-fasta.py -> build/scripts-3.5
2021-06-15T14:20:42,565   copying and adjusting bin/filter-reads-alignments.py -> build/scripts-3.5
2021-06-15T14:20:42,569   copying and adjusting bin/filter-sam.py -> build/scripts-3.5
2021-06-15T14:20:42,572   copying and adjusting bin/find-hits.py -> build/scripts-3.5
2021-06-15T14:20:42,576   copying and adjusting bin/format-fasta.py -> build/scripts-3.5
2021-06-15T14:20:42,581   copying and adjusting bin/genome-protein-summary.py -> build/scripts-3.5
2021-06-15T14:20:42,586   copying and adjusting bin/get-features.py -> build/scripts-3.5
2021-06-15T14:20:42,591   copying and adjusting bin/get-hosts.py -> build/scripts-3.5
2021-06-15T14:20:42,594   copying and adjusting bin/get-reads.py -> build/scripts-3.5
2021-06-15T14:20:42,598   copying and adjusting bin/get-taxonomy.py -> build/scripts-3.5
2021-06-15T14:20:42,601   copying and adjusting bin/graph-evalues.py -> build/scripts-3.5
2021-06-15T14:20:42,603   copying and adjusting bin/local-align.py -> build/scripts-3.5
2021-06-15T14:20:42,606   copying and adjusting bin/make-consensus.py -> build/scripts-3.5
2021-06-15T14:20:42,610   copying and adjusting bin/make-fasta-database.py -> build/scripts-3.5
2021-06-15T14:20:42,612   copying and adjusting bin/make-protein-database.py -> build/scripts-3.5
2021-06-15T14:20:42,617   copying and adjusting bin/ncbi-fetch-id.py -> build/scripts-3.5
2021-06-15T14:20:42,621   copying and adjusting bin/newick-to-ascii.py -> build/scripts-3.5
2021-06-15T14:20:42,625   copying and adjusting bin/noninteractive-alignment-panel.py -> build/scripts-3.5
2021-06-15T14:20:42,633   copying and adjusting bin/parse-genbank-flat-file.py -> build/scripts-3.5
2021-06-15T14:20:42,636   copying and adjusting bin/position-summary.py -> build/scripts-3.5
2021-06-15T14:20:42,639   copying bin/pre-commit.sh -> build/scripts-3.5
2021-06-15T14:20:42,642   copying and adjusting bin/print-blast-xml-for-derek.py -> build/scripts-3.5
2021-06-15T14:20:42,645   copying and adjusting bin/print-blast-xml.py -> build/scripts-3.5
2021-06-15T14:20:42,647   copying and adjusting bin/print-read-lengths.py -> build/scripts-3.5
2021-06-15T14:20:42,650   copying and adjusting bin/proteins-to-pathogens.py -> build/scripts-3.5
2021-06-15T14:20:42,653   copying and adjusting bin/proteins-to-pathogens-civ.py -> build/scripts-3.5
2021-06-15T14:20:42,659   copying and adjusting bin/randomize-fasta.py -> build/scripts-3.5
2021-06-15T14:20:42,664   copying and adjusting bin/read-blast-json.py -> build/scripts-3.5
2021-06-15T14:20:42,667   copying and adjusting bin/read-blast-xml.py -> build/scripts-3.5
2021-06-15T14:20:42,671   copying and adjusting bin/relabel-newick-tree.py -> build/scripts-3.5
2021-06-15T14:20:42,675   copying and adjusting bin/run-bwa.py -> build/scripts-3.5
2021-06-15T14:20:42,678   copying and adjusting bin/run-bowtie2.py -> build/scripts-3.5
2021-06-15T14:20:42,682   copying and adjusting bin/sam-coverage.py -> build/scripts-3.5
2021-06-15T14:20:42,685   copying and adjusting bin/sam-coverage-depth.py -> build/scripts-3.5
2021-06-15T14:20:42,688   copying and adjusting bin/sam-to-fasta-alignment.py -> build/scripts-3.5
2021-06-15T14:20:42,691   copying and adjusting bin/sam-reference-read-counts.py -> build/scripts-3.5
2021-06-15T14:20:42,693   copying and adjusting bin/sam-references.py -> build/scripts-3.5
2021-06-15T14:20:42,696   copying and adjusting bin/sff-to-fastq.py -> build/scripts-3.5
2021-06-15T14:20:42,700   copying and adjusting bin/split-fasta-by-adaptors.py -> build/scripts-3.5
2021-06-15T14:20:42,705   copying and adjusting bin/subset-protein-database.py -> build/scripts-3.5
2021-06-15T14:20:42,709   copying and adjusting bin/summarize-fasta-bases.py -> build/scripts-3.5
2021-06-15T14:20:42,713   copying and adjusting bin/summarize-reads.py -> build/scripts-3.5
2021-06-15T14:20:42,717   copying and adjusting bin/translate.py -> build/scripts-3.5
2021-06-15T14:20:42,719   copying and adjusting bin/trim-primers.py -> build/scripts-3.5
2021-06-15T14:20:42,722   copying and adjusting bin/trim-reads.py -> build/scripts-3.5
2021-06-15T14:20:42,724   copying and adjusting bin/write-htcondor-job-spec.py -> build/scripts-3.5
2021-06-15T14:20:42,727   changing mode of build/scripts-3.5/aa-info.py from 644 to 755
2021-06-15T14:20:42,727   changing mode of build/scripts-3.5/aa-to-dna.py from 644 to 755
2021-06-15T14:20:42,728   changing mode of build/scripts-3.5/aa-to-properties.py from 644 to 755
2021-06-15T14:20:42,729   changing mode of build/scripts-3.5/adaptor-distances.py from 644 to 755
2021-06-15T14:20:42,730   changing mode of build/scripts-3.5/alignment-panel-civ.py from 644 to 755
2021-06-15T14:20:42,730   changing mode of build/scripts-3.5/alignments-per-read.py from 644 to 755
2021-06-15T14:20:42,731   changing mode of build/scripts-3.5/bit-score-to-e-value.py from 644 to 755
2021-06-15T14:20:42,732   changing mode of build/scripts-3.5/cat-json-blast-records.py from 644 to 755
2021-06-15T14:20:42,732   changing mode of build/scripts-3.5/check-fasta-json-blast-consistency.py from 644 to 755
2021-06-15T14:20:42,733   changing mode of build/scripts-3.5/codon-distance.py from 644 to 755
2021-06-15T14:20:42,734   changing mode of build/scripts-3.5/compare-consensuses.py from 644 to 755
2021-06-15T14:20:42,734   changing mode of build/scripts-3.5/compare-sequences.py from 644 to 755
2021-06-15T14:20:42,735   changing mode of build/scripts-3.5/convert-blast-xml-to-json.py from 644 to 755
2021-06-15T14:20:42,736   changing mode of build/scripts-3.5/convert-diamond-to-json.py from 644 to 755
2021-06-15T14:20:42,736   changing mode of build/scripts-3.5/convert-diamond-to-sam.py from 644 to 755
2021-06-15T14:20:42,737   changing mode of build/scripts-3.5/create-newick-relabeling-output.py from 644 to 755
2021-06-15T14:20:42,738   changing mode of build/scripts-3.5/dark-matter-version.py from 644 to 755
2021-06-15T14:20:42,738   changing mode of build/scripts-3.5/describe-protein-database.py from 644 to 755
2021-06-15T14:20:42,739   changing mode of build/scripts-3.5/dna-to-aa.py from 644 to 755
2021-06-15T14:20:42,739   changing mode of build/scripts-3.5/e-value-to-bit-score.py from 644 to 755
2021-06-15T14:20:42,740   changing mode of build/scripts-3.5/extract-ORFs.py from 644 to 755
2021-06-15T14:20:42,741   changing mode of build/scripts-3.5/fasta-base-indices.py from 644 to 755
2021-06-15T14:20:42,742   changing mode of build/scripts-3.5/fasta-count.py from 644 to 755
2021-06-15T14:20:42,742   changing mode of build/scripts-3.5/fasta-identity-table.py from 644 to 755
2021-06-15T14:20:42,743   changing mode of build/scripts-3.5/fasta-ids.py from 644 to 755
2021-06-15T14:20:42,744   changing mode of build/scripts-3.5/fasta-join.py from 644 to 755
2021-06-15T14:20:42,744   changing mode of build/scripts-3.5/fasta-lengths.py from 644 to 755
2021-06-15T14:20:42,745   changing mode of build/scripts-3.5/fasta-sequences.py from 644 to 755
2021-06-15T14:20:42,746   changing mode of build/scripts-3.5/fasta-sort.py from 644 to 755
2021-06-15T14:20:42,746   changing mode of build/scripts-3.5/fasta-split-by-id.py from 644 to 755
2021-06-15T14:20:42,747   changing mode of build/scripts-3.5/fasta-subset.py from 644 to 755
2021-06-15T14:20:42,747   changing mode of build/scripts-3.5/fasta-subtraction.py from 644 to 755
2021-06-15T14:20:42,748   changing mode of build/scripts-3.5/fasta-to-phylip.py from 644 to 755
2021-06-15T14:20:42,749   changing mode of build/scripts-3.5/fasta-variable-sites.py from 644 to 755
2021-06-15T14:20:42,750   changing mode of build/scripts-3.5/filter-fasta-by-complexity.py from 644 to 755
2021-06-15T14:20:42,750   changing mode of build/scripts-3.5/filter-fasta-by-taxonomy.py from 644 to 755
2021-06-15T14:20:42,751   changing mode of build/scripts-3.5/filter-fasta.py from 644 to 755
2021-06-15T14:20:42,751   changing mode of build/scripts-3.5/filter-hits-to-fasta.py from 644 to 755
2021-06-15T14:20:42,752   changing mode of build/scripts-3.5/filter-reads-alignments.py from 644 to 755
2021-06-15T14:20:42,753   changing mode of build/scripts-3.5/filter-sam.py from 644 to 755
2021-06-15T14:20:42,753   changing mode of build/scripts-3.5/find-hits.py from 644 to 755
2021-06-15T14:20:42,754   changing mode of build/scripts-3.5/format-fasta.py from 644 to 755
2021-06-15T14:20:42,755   changing mode of build/scripts-3.5/genome-protein-summary.py from 644 to 755
2021-06-15T14:20:42,755   changing mode of build/scripts-3.5/get-features.py from 644 to 755
2021-06-15T14:20:42,756   changing mode of build/scripts-3.5/get-hosts.py from 644 to 755
2021-06-15T14:20:42,756   changing mode of build/scripts-3.5/get-reads.py from 644 to 755
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2021-06-15T14:20:42,758   changing mode of build/scripts-3.5/graph-evalues.py from 644 to 755
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2021-06-15T14:20:42,759   changing mode of build/scripts-3.5/make-consensus.py from 644 to 755
2021-06-15T14:20:42,760   changing mode of build/scripts-3.5/make-fasta-database.py from 644 to 755
2021-06-15T14:20:42,760   changing mode of build/scripts-3.5/make-protein-database.py from 644 to 755
2021-06-15T14:20:42,761   changing mode of build/scripts-3.5/ncbi-fetch-id.py from 644 to 755
2021-06-15T14:20:42,762   changing mode of build/scripts-3.5/newick-to-ascii.py from 644 to 755
2021-06-15T14:20:42,762   changing mode of build/scripts-3.5/noninteractive-alignment-panel.py from 644 to 755
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2021-06-15T14:20:42,765   changing mode of build/scripts-3.5/print-blast-xml-for-derek.py from 644 to 755
2021-06-15T14:20:42,765   changing mode of build/scripts-3.5/print-blast-xml.py from 644 to 755
2021-06-15T14:20:42,766   changing mode of build/scripts-3.5/print-read-lengths.py from 644 to 755
2021-06-15T14:20:42,767   changing mode of build/scripts-3.5/proteins-to-pathogens.py from 644 to 755
2021-06-15T14:20:42,767   changing mode of build/scripts-3.5/proteins-to-pathogens-civ.py from 644 to 755
2021-06-15T14:20:42,768   changing mode of build/scripts-3.5/randomize-fasta.py from 644 to 755
2021-06-15T14:20:42,769   changing mode of build/scripts-3.5/read-blast-json.py from 644 to 755
2021-06-15T14:20:42,769   changing mode of build/scripts-3.5/read-blast-xml.py from 644 to 755
2021-06-15T14:20:42,770   changing mode of build/scripts-3.5/relabel-newick-tree.py from 644 to 755
2021-06-15T14:20:42,771   changing mode of build/scripts-3.5/run-bwa.py from 644 to 755
2021-06-15T14:20:42,771   changing mode of build/scripts-3.5/run-bowtie2.py from 644 to 755
2021-06-15T14:20:42,772   changing mode of build/scripts-3.5/sam-coverage.py from 644 to 755
2021-06-15T14:20:42,773   changing mode of build/scripts-3.5/sam-coverage-depth.py from 644 to 755
2021-06-15T14:20:42,773   changing mode of build/scripts-3.5/sam-to-fasta-alignment.py from 644 to 755
2021-06-15T14:20:42,774   changing mode of build/scripts-3.5/sam-reference-read-counts.py from 644 to 755
2021-06-15T14:20:42,774   changing mode of build/scripts-3.5/sam-references.py from 644 to 755
2021-06-15T14:20:42,775   changing mode of build/scripts-3.5/sff-to-fastq.py from 644 to 755
2021-06-15T14:20:42,776   changing mode of build/scripts-3.5/split-fasta-by-adaptors.py from 644 to 755
2021-06-15T14:20:42,776   changing mode of build/scripts-3.5/subset-protein-database.py from 644 to 755
2021-06-15T14:20:42,777   changing mode of build/scripts-3.5/summarize-fasta-bases.py from 644 to 755
2021-06-15T14:20:42,777   changing mode of build/scripts-3.5/summarize-reads.py from 644 to 755
2021-06-15T14:20:42,778   changing mode of build/scripts-3.5/translate.py from 644 to 755
2021-06-15T14:20:42,778   changing mode of build/scripts-3.5/trim-primers.py from 644 to 755
2021-06-15T14:20:42,779   changing mode of build/scripts-3.5/trim-reads.py from 644 to 755
2021-06-15T14:20:42,779   changing mode of build/scripts-3.5/write-htcondor-job-spec.py from 644 to 755
2021-06-15T14:20:42,780   installing to build/bdist.linux-armv7l/wheel
2021-06-15T14:20:42,780   running install
2021-06-15T14:20:42,781   running install_lib
2021-06-15T14:20:42,787   creating build/bdist.linux-armv7l
2021-06-15T14:20:42,788   creating build/bdist.linux-armv7l/wheel
2021-06-15T14:20:42,792   creating build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,793   copying build/lib/dark/ncbidb.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,796   copying build/lib/dark/genbank.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,801   creating build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T14:20:42,803   copying build/lib/dark/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T14:20:42,805   copying build/lib/dark/diamond/conversion.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T14:20:42,810   copying build/lib/dark/diamond/hsp.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T14:20:42,813   copying build/lib/dark/diamond/sam.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T14:20:42,818   copying build/lib/dark/diamond/run.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T14:20:42,822   copying build/lib/dark/diamond/alignments.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-06-15T14:20:42,827   copying build/lib/dark/fasta.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,833   copying build/lib/dark/__init__.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,838   copying build/lib/dark/local_align.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,843   copying build/lib/dark/dimension.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,846   copying build/lib/dark/hsp.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,850   copying build/lib/dark/summarize.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,853   copying build/lib/dark/dna.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,857   copying build/lib/dark/proteins.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,863   copying build/lib/dark/btop.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,869   copying build/lib/dark/orfs.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,873   copying build/lib/dark/taxonomy.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,880   copying build/lib/dark/baseimage.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,884   copying build/lib/dark/bowtie2.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,888   copying build/lib/dark/analyze_reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,891   copying build/lib/dark/errors.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,894   copying build/lib/dark/fasta_ss.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,897   copying build/lib/dark/database.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,901   creating build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,903   copying build/lib/dark/blast/__init__.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,907   copying build/lib/dark/blast/conversion.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,912   copying build/lib/dark/blast/hsp.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,918   copying build/lib/dark/blast/params.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,922   copying build/lib/dark/blast/hacks.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,926   copying build/lib/dark/blast/alignments.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,929   copying build/lib/dark/blast/records.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,932   copying build/lib/dark/blast/score.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-06-15T14:20:42,935   copying build/lib/dark/distance.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,938   copying build/lib/dark/intervals.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,941   copying build/lib/dark/aligners.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,945   copying build/lib/dark/mutations.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,951   copying build/lib/dark/sam.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,958   copying build/lib/dark/aa.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,965   copying build/lib/dark/html.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,970   creating build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T14:20:42,971   copying build/lib/dark/civ/__init__.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T14:20:42,974   copying build/lib/dark/civ/proteins.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T14:20:42,982   copying build/lib/dark/civ/html.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T14:20:42,987   copying build/lib/dark/civ/graphics.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-06-15T14:20:42,994   copying build/lib/dark/sequence.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:42,999   copying build/lib/dark/utils.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,005   copying build/lib/dark/titles.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,010   copying build/lib/dark/features.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,014   copying build/lib/dark/reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,020   copying build/lib/dark/fastq.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,023   copying build/lib/dark/filter.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,027   copying build/lib/dark/alignments.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,031   copying build/lib/dark/consensus.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,035   copying build/lib/dark/cigar.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,039   copying build/lib/dark/simplify.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,042   copying build/lib/dark/process.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,046   copying build/lib/dark/entrez.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,049   copying build/lib/dark/fpcache.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,052   copying build/lib/dark/score.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,055   copying build/lib/dark/ipynb.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,059   copying build/lib/dark/graphics.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,064   copying build/lib/dark/codonDistance.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,067   copying build/lib/dark/genomes.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,071   copying build/lib/dark/colors.py -> build/bdist.linux-armv7l/wheel/dark
2021-06-15T14:20:43,074   running install_egg_info
2021-06-15T14:20:43,118   running egg_info
2021-06-15T14:20:43,119   writing dependency_links to dark_matter.egg-info/dependency_links.txt
2021-06-15T14:20:43,122   writing dark_matter.egg-info/PKG-INFO
2021-06-15T14:20:43,125   writing top-level names to dark_matter.egg-info/top_level.txt
2021-06-15T14:20:43,127   writing requirements to dark_matter.egg-info/requires.txt
2021-06-15T14:20:43,160   reading manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-06-15T14:20:43,195   writing manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-06-15T14:20:43,198   Copying dark_matter.egg-info to build/bdist.linux-armv7l/wheel/dark_matter-4.0.3-py3.5.egg-info
2021-06-15T14:20:43,217   running install_scripts
2021-06-15T14:20:43,339   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data
2021-06-15T14:20:43,340   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,342   copying build/scripts-3.5/relabel-newick-tree.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,345   copying build/scripts-3.5/bit-score-to-e-value.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,349   copying build/scripts-3.5/filter-fasta-by-complexity.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,353   copying build/scripts-3.5/noninteractive-alignment-panel.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,357   copying build/scripts-3.5/trim-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,361   copying build/scripts-3.5/sam-coverage-depth.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,365   copying build/scripts-3.5/split-fasta-by-adaptors.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,368   copying build/scripts-3.5/trim-primers.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,372   copying build/scripts-3.5/aa-to-dna.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,375   copying build/scripts-3.5/fasta-variable-sites.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,379   copying build/scripts-3.5/sam-reference-read-counts.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,382   copying build/scripts-3.5/convert-diamond-to-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,386   copying build/scripts-3.5/download-genbank.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,390   copying build/scripts-3.5/pre-commit.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,393   copying build/scripts-3.5/sff-to-fastq.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,396   copying build/scripts-3.5/filter-fasta-by-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,400   copying build/scripts-3.5/sam-to-fasta-alignment.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,404   copying build/scripts-3.5/fasta-to-phylip.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,407   copying build/scripts-3.5/fasta-ids.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,411   copying build/scripts-3.5/parse-genbank-flat-file.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,414   copying build/scripts-3.5/randomize-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,417   copying build/scripts-3.5/fasta-base-indices.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,420   copying build/scripts-3.5/proteins-to-pathogens-civ.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,424   copying build/scripts-3.5/print-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,437   copying build/scripts-3.5/genome-protein-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,440   copying build/scripts-3.5/local-align.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,444   copying build/scripts-3.5/convert-blast-xml-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,447   copying build/scripts-3.5/fasta-identity-table.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,456   copying build/scripts-3.5/print-read-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,459   copying build/scripts-3.5/write-htcondor-job-spec.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,463   copying build/scripts-3.5/summarize-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,466   copying build/scripts-3.5/create-newick-relabeling-output.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,469   copying build/scripts-3.5/position-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,480   copying build/scripts-3.5/sam-coverage.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,483   copying build/scripts-3.5/proteins-to-pathogens.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,487   copying build/scripts-3.5/fasta-diff.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,497   copying build/scripts-3.5/compare-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,501   copying build/scripts-3.5/find-hits.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,504   copying build/scripts-3.5/fasta-sort.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,511   copying build/scripts-3.5/aa-info.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,514   copying build/scripts-3.5/convert-sam-to-fastq.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,517   copying build/scripts-3.5/subset-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,521   copying build/scripts-3.5/fasta-split-by-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,524   copying build/scripts-3.5/read-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,530   copying build/scripts-3.5/translate.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,533   copying build/scripts-3.5/extract-ORFs.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,537   copying build/scripts-3.5/compare-consensuses.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,541   copying build/scripts-3.5/filter-reads-alignments.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,545   copying build/scripts-3.5/summarize-fasta-bases.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,548   copying build/scripts-3.5/convert-diamond-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,551   copying build/scripts-3.5/run-bwa.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,554   copying build/scripts-3.5/sam-references.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,557   copying build/scripts-3.5/fasta-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,560   copying build/scripts-3.5/get-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,564   copying build/scripts-3.5/codon-distance.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,568   copying build/scripts-3.5/filter-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,572   copying build/scripts-3.5/get-hosts.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,581   copying build/scripts-3.5/get-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
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2021-06-15T14:20:43,589   copying build/scripts-3.5/fasta-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,592   copying build/scripts-3.5/filter-hits-to-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,596   copying build/scripts-3.5/make-consensus.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,600   copying build/scripts-3.5/print-blast-xml-for-derek.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,603   copying build/scripts-3.5/alignments-per-read.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,606   copying build/scripts-3.5/describe-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,609   copying build/scripts-3.5/e-value-to-bit-score.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,612   copying build/scripts-3.5/cat-json-blast-records.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,615   copying build/scripts-3.5/ncbi-fetch-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,618   copying build/scripts-3.5/dna-to-aa.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,622   copying build/scripts-3.5/make-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,625   copying build/scripts-3.5/fasta-join.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,629   copying build/scripts-3.5/get-features.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,632   copying build/scripts-3.5/fasta-count.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,635   copying build/scripts-3.5/filter-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts
2021-06-15T14:20:43,638   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/relabel-newick-tree.py to 755
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2021-06-15T14:20:43,675   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/convert-diamond-to-json.py to 755
2021-06-15T14:20:43,675   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/run-bwa.py to 755
2021-06-15T14:20:43,676   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/sam-references.py to 755
2021-06-15T14:20:43,677   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/fasta-lengths.py to 755
2021-06-15T14:20:43,677   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/get-reads.py to 755
2021-06-15T14:20:43,678   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/codon-distance.py to 755
2021-06-15T14:20:43,678   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/filter-sam.py to 755
2021-06-15T14:20:43,679   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/get-hosts.py to 755
2021-06-15T14:20:43,680   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/newick-to-ascii.py to 755
2021-06-15T14:20:43,680   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/fasta-subset.py to 755
2021-06-15T14:20:43,681   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/get-taxonomy.py to 755
2021-06-15T14:20:43,681   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/format-fasta.py to 755
2021-06-15T14:20:43,682   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/fasta-sequences.py to 755
2021-06-15T14:20:43,683   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/filter-hits-to-fasta.py to 755
2021-06-15T14:20:43,683   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/make-consensus.py to 755
2021-06-15T14:20:43,684   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/print-blast-xml-for-derek.py to 755
2021-06-15T14:20:43,685   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/alignments-per-read.py to 755
2021-06-15T14:20:43,685   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/describe-protein-database.py to 755
2021-06-15T14:20:43,686   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/e-value-to-bit-score.py to 755
2021-06-15T14:20:43,687   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/cat-json-blast-records.py to 755
2021-06-15T14:20:43,687   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/ncbi-fetch-id.py to 755
2021-06-15T14:20:43,688   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/dna-to-aa.py to 755
2021-06-15T14:20:43,688   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/make-protein-database.py to 755
2021-06-15T14:20:43,689   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/fasta-join.py to 755
2021-06-15T14:20:43,689   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/get-features.py to 755
2021-06-15T14:20:43,690   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/fasta-count.py to 755
2021-06-15T14:20:43,690   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.data/scripts/filter-fasta.py to 755
2021-06-15T14:20:43,761   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.3.dist-info/WHEEL
2021-06-15T14:20:44,537   Building wheel for dark-matter (setup.py): finished with status 'done'
2021-06-15T14:20:44,545   Created wheel for dark-matter: filename=dark_matter-4.0.3-py3-none-any.whl size=317133 sha256=c09485b78329c58f04307f8eeb7e70870054dbed58902eaa6378758068bdf40f
2021-06-15T14:20:44,545   Stored in directory: /tmp/pip-ephem-wheel-cache-bqkt6pqe/wheels/c9/4e/d6/870dd2da5575266134159c31d7eaa7b5436d8c69f2c94436af
2021-06-15T14:20:44,572 Successfully built dark-matter
2021-06-15T14:20:44,724 Removed build tracker: '/tmp/pip-req-tracker-0iowi5b1'