2021-06-17T08:30:49,602 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality. 2021-06-17T08:30:50,166 Created temporary directory: /tmp/pip-ephem-wheel-cache-bstazmqv 2021-06-17T08:30:50,171 Created temporary directory: /tmp/pip-req-tracker-2jfgx_8w 2021-06-17T08:30:50,171 Initialized build tracking at /tmp/pip-req-tracker-2jfgx_8w 2021-06-17T08:30:50,172 Created build tracker: /tmp/pip-req-tracker-2jfgx_8w 2021-06-17T08:30:50,172 Entered build tracker: /tmp/pip-req-tracker-2jfgx_8w 2021-06-17T08:30:50,173 Created temporary directory: /tmp/pip-wheel-66rysowc 2021-06-17T08:30:50,228 1 location(s) to search for versions of pyfba: 2021-06-17T08:30:50,228 * https://pypi.org/simple/pyfba/ 2021-06-17T08:30:50,229 Fetching project page and analyzing links: https://pypi.org/simple/pyfba/ 2021-06-17T08:30:50,231 Getting page https://pypi.org/simple/pyfba/ 2021-06-17T08:30:50,235 Found index url https://pypi.org/simple 2021-06-17T08:30:50,530 Found link https://files.pythonhosted.org/packages/3a/7b/aea57c63ca383774dd6f73f36716f3ef9ca2a3875d03c44247de163f6242/PyFBA-0.5.tar.gz#sha256=c496939ac2c8b63337c6c2c960e0756962b1a95fdd4dd52e83b9847ba7e90d60 (from https://pypi.org/simple/pyfba/), version: 0.5 2021-06-17T08:30:50,531 Found link https://files.pythonhosted.org/packages/f2/16/906be0d0516e1836e0ba39f33a65e31343a8d19bd809e2313dbd9a6f089d/PyFBA-0.6.tar.gz#sha256=254e06e359bc3ccb824337e1ab547818850234af27464cc5acc70f593a9c79f3 (from https://pypi.org/simple/pyfba/), version: 0.6 2021-06-17T08:30:50,532 Found link https://files.pythonhosted.org/packages/38/a2/a695bfd07f2a00617e437ac23221d58375b3170ba0e184a331a89bbbb8aa/PyFBA-0.7.tar.gz#sha256=82f7ce8dab3fed47c8e418be2522cf44633664a15d5164da6bf99a79d5546d8c (from https://pypi.org/simple/pyfba/), version: 0.7 2021-06-17T08:30:50,533 Found link https://files.pythonhosted.org/packages/18/84/af358c5c5877d83d50da4cd1d9016d31a38ff8da37b93f0464f2456b5654/PyFBA-0.8.tar.gz#sha256=121908acdf64afc221c38b77a251c27a960e4b1061125600aad53bc39edbef48 (from https://pypi.org/simple/pyfba/), version: 0.8 2021-06-17T08:30:50,534 Found link https://files.pythonhosted.org/packages/ef/ef/5a95f5dfe0314f78789e27f155f6d4cac77c793a0c793c67e4ffc75aac71/PyFBA-0.9.tar.gz#sha256=d88b6dd4e5ac168afa5b0d028235647d5fb0610f66031ff06a5dea8a02378864 (from https://pypi.org/simple/pyfba/), version: 0.9 2021-06-17T08:30:50,535 Found link https://files.pythonhosted.org/packages/a1/ae/193bb4ab4a39cba99a1819c09eba02578222e462134ee788e98da1f532e0/PyFBA-0.91.tar.gz#sha256=60037cdd536d033c415319934bb93daa336a96ebdd8c6cb87b7d812b07068264 (from https://pypi.org/simple/pyfba/), version: 0.91 2021-06-17T08:30:50,535 Found link https://files.pythonhosted.org/packages/cb/5d/6d18febeb4cfd43b55d12bce960ae63df9c571d5b0da3d8f839762b989d4/PyFBA-0.92.tar.gz#sha256=9a9373fd662030232463f8b77c4a290b0d628472eeca558e8b94cc1aa2712efc (from https://pypi.org/simple/pyfba/), version: 0.92 2021-06-17T08:30:50,536 Found link https://files.pythonhosted.org/packages/2a/bd/b4d55a6e61486aa2dc42240c51bc9493d7c9ae1f8000dee74db5dabedef6/PyFBA-0.95.tar.gz#sha256=07e5b6df0898a9626d1182b0f7c968eef9d4884eb5ada0500cbb9024544ca28f (from https://pypi.org/simple/pyfba/), version: 0.95 2021-06-17T08:30:50,537 Found link https://files.pythonhosted.org/packages/45/78/48653dc931578b0563f6674c4947adff08403712d0c4f179dc73674b7966/PyFBA-1.1.tar.gz#sha256=1653b468bc8f5b571b4ae4dcdc62706ad1c981437cc6f346a97fb0335710c215 (from https://pypi.org/simple/pyfba/), version: 1.1 2021-06-17T08:30:50,538 Found link https://files.pythonhosted.org/packages/af/6a/117db517815ab7cf64578250002117905aa0221c12774d8a2dad3fd833c9/PyFBA-1.2.tar.gz#sha256=31f45d118fc34418c3c9528da5fe7aae74cde2ae1e53aa739528e71c0f0c20cc (from https://pypi.org/simple/pyfba/), version: 1.2 2021-06-17T08:30:50,538 Found link https://files.pythonhosted.org/packages/3b/57/9e1ed96aa23c7fdf8e1e66192404c3b4883eaf48962f939b7103444e45ea/PyFBA-2.51.tar.gz#sha256=b13ccd762756c18d18ef72e827850b13c7c9ca55193af541b0484a4597460eb2 (from https://pypi.org/simple/pyfba/), version: 2.51 2021-06-17T08:30:50,565 Given no hashes to check 1 links for project 'pyfba': discarding no candidates 2021-06-17T08:30:50,592 Collecting pyfba==2.51 2021-06-17T08:30:50,596 Created temporary directory: /tmp/pip-unpack-roq0dku3 2021-06-17T08:30:52,714 Downloading PyFBA-2.51.tar.gz (12.5 MB) 2021-06-17T08:31:03,875 Added pyfba==2.51 from https://files.pythonhosted.org/packages/3b/57/9e1ed96aa23c7fdf8e1e66192404c3b4883eaf48962f939b7103444e45ea/PyFBA-2.51.tar.gz#sha256=b13ccd762756c18d18ef72e827850b13c7c9ca55193af541b0484a4597460eb2 to build tracker '/tmp/pip-req-tracker-2jfgx_8w' 2021-06-17T08:31:03,877 Running setup.py (path:/tmp/pip-wheel-66rysowc/pyfba_7c6949e319b8425da2d65a6c7e026911/setup.py) egg_info for package pyfba 2021-06-17T08:31:03,878 Created temporary directory: /tmp/pip-pip-egg-info-s730s4f4 2021-06-17T08:31:03,879 Running command python setup.py egg_info 2021-06-17T08:31:06,134 running egg_info 2021-06-17T08:31:06,138 creating /tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info 2021-06-17T08:31:06,140 writing requirements to /tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/requires.txt 2021-06-17T08:31:06,142 writing dependency_links to /tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/dependency_links.txt 2021-06-17T08:31:06,144 writing top-level names to /tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/top_level.txt 2021-06-17T08:31:06,147 writing entry points to /tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/entry_points.txt 2021-06-17T08:31:06,149 writing /tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/PKG-INFO 2021-06-17T08:31:06,156 writing manifest file '/tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/SOURCES.txt' 2021-06-17T08:31:06,194 reading manifest file '/tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/SOURCES.txt' 2021-06-17T08:31:06,197 reading manifest template 'MANIFEST.in' 2021-06-17T08:31:06,353 writing manifest file '/tmp/pip-pip-egg-info-s730s4f4/PyFBA.egg-info/SOURCES.txt' 2021-06-17T08:31:06,486 Source in /tmp/pip-wheel-66rysowc/pyfba_7c6949e319b8425da2d65a6c7e026911 has version 2.51, which satisfies requirement pyfba==2.51 from https://files.pythonhosted.org/packages/3b/57/9e1ed96aa23c7fdf8e1e66192404c3b4883eaf48962f939b7103444e45ea/PyFBA-2.51.tar.gz#sha256=b13ccd762756c18d18ef72e827850b13c7c9ca55193af541b0484a4597460eb2 2021-06-17T08:31:06,488 Removed pyfba==2.51 from https://files.pythonhosted.org/packages/3b/57/9e1ed96aa23c7fdf8e1e66192404c3b4883eaf48962f939b7103444e45ea/PyFBA-2.51.tar.gz#sha256=b13ccd762756c18d18ef72e827850b13c7c9ca55193af541b0484a4597460eb2 from build tracker '/tmp/pip-req-tracker-2jfgx_8w' 2021-06-17T08:31:06,498 Created temporary directory: /tmp/pip-unpack-0ussmvd8 2021-06-17T08:31:06,499 Building wheels for collected packages: pyfba 2021-06-17T08:31:06,505 Created temporary directory: /tmp/pip-wheel-6ltjoqg5 2021-06-17T08:31:06,506 Building wheel for pyfba (setup.py): started 2021-06-17T08:31:06,506 Destination directory: /tmp/pip-wheel-6ltjoqg5 2021-06-17T08:31:06,507 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-66rysowc/pyfba_7c6949e319b8425da2d65a6c7e026911/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-66rysowc/pyfba_7c6949e319b8425da2d65a6c7e026911/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6ltjoqg5 2021-06-17T08:31:08,670 running bdist_wheel 2021-06-17T08:31:08,681 running build 2021-06-17T08:31:08,682 running build_py 2021-06-17T08:31:08,684 creating build 2021-06-17T08:31:08,685 creating build/lib 2021-06-17T08:31:08,686 creating build/lib/PyFBA 2021-06-17T08:31:08,687 copying PyFBA/version.py -> build/lib/PyFBA 2021-06-17T08:31:08,690 copying PyFBA/__init__.py -> build/lib/PyFBA 2021-06-17T08:31:08,695 creating build/lib/example_code 2021-06-17T08:31:08,696 copying example_code/statistics.py -> build/lib/example_code 2021-06-17T08:31:08,699 copying example_code/find_reactions_by_compound.py -> build/lib/example_code 2021-06-17T08:31:08,702 copying example_code/fba_from_reactions.py -> build/lib/example_code 2021-06-17T08:31:08,705 copying example_code/rast_annotations_to_reactions.py -> build/lib/example_code 2021-06-17T08:31:08,707 copying example_code/reaction_info.py -> build/lib/example_code 2021-06-17T08:31:08,710 copying example_code/gapfill_from_reactions.py -> build/lib/example_code 2021-06-17T08:31:08,714 copying example_code/sbml_to_fba.py -> build/lib/example_code 2021-06-17T08:31:08,717 copying example_code/group_reactions.py -> build/lib/example_code 2021-06-17T08:31:08,721 copying example_code/__init__.py -> build/lib/example_code 2021-06-17T08:31:08,724 copying example_code/reaction_statistics.py -> build/lib/example_code 2021-06-17T08:31:08,729 copying example_code/find_roles_by_compound.py -> build/lib/example_code 2021-06-17T08:31:08,733 copying example_code/assigned_functions_to_reactions.py -> build/lib/example_code 2021-06-17T08:31:08,737 copying example_code/gapfill_from_reactions_multiple_conditions.py -> build/lib/example_code 2021-06-17T08:31:08,743 copying example_code/test_individual_reactions.py -> build/lib/example_code 2021-06-17T08:31:08,746 copying example_code/RAST_neighboring_roles.py -> build/lib/example_code 2021-06-17T08:31:08,749 copying example_code/run_fba_sbml.py -> build/lib/example_code 2021-06-17T08:31:08,753 creating build/lib/PyFBA/metabolism 2021-06-17T08:31:08,754 copying PyFBA/metabolism/compound.py -> build/lib/PyFBA/metabolism 2021-06-17T08:31:08,758 copying PyFBA/metabolism/biomass.py -> build/lib/PyFBA/metabolism 2021-06-17T08:31:08,762 copying PyFBA/metabolism/enzyme.py -> build/lib/PyFBA/metabolism 2021-06-17T08:31:08,765 copying PyFBA/metabolism/reaction.py -> build/lib/PyFBA/metabolism 2021-06-17T08:31:08,769 copying PyFBA/metabolism/__init__.py -> build/lib/PyFBA/metabolism 2021-06-17T08:31:08,773 creating build/lib/PyFBA/gapfill 2021-06-17T08:31:08,775 copying PyFBA/gapfill/probability.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,778 copying PyFBA/gapfill/subsystem.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,781 copying PyFBA/gapfill/roles.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,784 copying PyFBA/gapfill/reaction_minimization.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,788 copying PyFBA/gapfill/essentials.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,791 copying PyFBA/gapfill/limit_reactions.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,794 copying PyFBA/gapfill/linked_reactions.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,797 copying PyFBA/gapfill/__init__.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,800 copying PyFBA/gapfill/orphan_compound.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,803 copying PyFBA/gapfill/media.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,808 copying PyFBA/gapfill/ecnumbers.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,812 copying PyFBA/gapfill/bisections.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,817 copying PyFBA/gapfill/maps_to_proteins.py -> build/lib/PyFBA/gapfill 2021-06-17T08:31:08,823 creating build/lib/PyFBA/Biochemistry 2021-06-17T08:31:08,825 copying PyFBA/Biochemistry/__init__.py -> build/lib/PyFBA/Biochemistry 2021-06-17T08:31:08,829 creating build/lib/PyFBA/fba 2021-06-17T08:31:08,830 copying PyFBA/fba/create_stoichiometric_matrix.py -> build/lib/PyFBA/fba 2021-06-17T08:31:08,834 copying PyFBA/fba/__init__.py -> build/lib/PyFBA/fba 2021-06-17T08:31:08,836 copying PyFBA/fba/external_reactions.py -> build/lib/PyFBA/fba 2021-06-17T08:31:08,839 copying PyFBA/fba/bounds.py -> build/lib/PyFBA/fba 2021-06-17T08:31:08,843 copying PyFBA/fba/run_fba.py -> build/lib/PyFBA/fba 2021-06-17T08:31:08,846 copying PyFBA/fba/fluxes.py -> build/lib/PyFBA/fba 2021-06-17T08:31:08,849 creating build/lib/PyFBA/cmd 2021-06-17T08:31:08,851 copying PyFBA/cmd/gapfill_from_roles.py -> build/lib/PyFBA/cmd 2021-06-17T08:31:08,855 copying PyFBA/cmd/__init__.py -> build/lib/PyFBA/cmd 2021-06-17T08:31:08,858 copying PyFBA/cmd/entry.py -> build/lib/PyFBA/cmd 2021-06-17T08:31:08,861 copying PyFBA/cmd/fluxes.py -> build/lib/PyFBA/cmd 2021-06-17T08:31:08,864 creating build/lib/PyFBA/model 2021-06-17T08:31:08,866 copying PyFBA/model/build_model.py -> build/lib/PyFBA/model 2021-06-17T08:31:08,869 copying PyFBA/model/fba.py -> build/lib/PyFBA/model 2021-06-17T08:31:08,872 copying PyFBA/model/__init__.py -> build/lib/PyFBA/model 2021-06-17T08:31:08,875 copying PyFBA/model/model.py -> build/lib/PyFBA/model 2021-06-17T08:31:08,881 creating build/lib/PyFBA/parse 2021-06-17T08:31:08,882 copying PyFBA/parse/config.py -> build/lib/PyFBA/parse 2021-06-17T08:31:08,886 copying PyFBA/parse/model_seed.py -> build/lib/PyFBA/parse 2021-06-17T08:31:08,892 copying PyFBA/parse/__init__.py -> build/lib/PyFBA/parse 2021-06-17T08:31:08,896 copying PyFBA/parse/rast.py -> build/lib/PyFBA/parse 2021-06-17T08:31:08,901 copying PyFBA/parse/model_seed_solr.py -> build/lib/PyFBA/parse 2021-06-17T08:31:08,906 copying PyFBA/parse/read_media.py -> build/lib/PyFBA/parse 2021-06-17T08:31:08,910 copying PyFBA/parse/SBML.py -> build/lib/PyFBA/parse 2021-06-17T08:31:08,916 creating build/lib/PyFBA/tests 2021-06-17T08:31:08,917 copying PyFBA/tests/test_lp.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,920 copying PyFBA/tests/test_reactions_and_roles.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,923 copying PyFBA/tests/test_model_seed_parsing.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,926 copying PyFBA/tests/test_biomass_equation.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,929 copying PyFBA/tests/__init__.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,931 copying PyFBA/tests/test_read_media.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,934 copying PyFBA/tests/test_glpk_solver.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,938 copying PyFBA/tests/test_reaction.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,941 copying PyFBA/tests/test_bisection.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,944 copying PyFBA/tests/test_bounds.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,947 copying PyFBA/tests/test_fba.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,950 copying PyFBA/tests/assertDeepAlmostEqual.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,953 copying PyFBA/tests/test_enzyme.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,957 copying PyFBA/tests/test_model_seed_object.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,959 copying PyFBA/tests/test_suggestions.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,962 copying PyFBA/tests/test_compound.py -> build/lib/PyFBA/tests 2021-06-17T08:31:08,966 creating build/lib/PyFBA/logs 2021-06-17T08:31:08,968 copying PyFBA/logs/messaging.py -> build/lib/PyFBA/logs 2021-06-17T08:31:08,971 copying PyFBA/logs/__init__.py -> build/lib/PyFBA/logs 2021-06-17T08:31:08,974 copying PyFBA/logs/errors.py -> build/lib/PyFBA/logs 2021-06-17T08:31:08,977 copying PyFBA/logs/formatting.py -> build/lib/PyFBA/logs 2021-06-17T08:31:08,980 creating build/lib/PyFBA/lp 2021-06-17T08:31:08,982 copying PyFBA/lp/glpk_solver.py -> build/lib/PyFBA/lp 2021-06-17T08:31:08,985 copying PyFBA/lp/__init__.py -> build/lib/PyFBA/lp 2021-06-17T08:31:08,989 creating build/lib/PyFBA/filters 2021-06-17T08:31:08,990 copying PyFBA/filters/reactions_and_proteins.py -> build/lib/PyFBA/filters 2021-06-17T08:31:08,994 copying PyFBA/filters/roles_and_complexes.py -> build/lib/PyFBA/filters 2021-06-17T08:31:08,996 copying PyFBA/filters/__init__.py -> build/lib/PyFBA/filters 2021-06-17T08:31:08,999 copying PyFBA/filters/roles_and_reactions.py -> build/lib/PyFBA/filters 2021-06-17T08:31:09,004 creating build/lib/PyFBA/model_seed 2021-06-17T08:31:09,005 copying PyFBA/model_seed/model_data.py -> build/lib/PyFBA/model_seed 2021-06-17T08:31:09,008 copying PyFBA/model_seed/__init__.py -> build/lib/PyFBA/model_seed 2021-06-17T08:31:09,012 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:09,013 copying PyFBA/Biochemistry/ModelSEEDDatabase/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:09,017 creating build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,018 copying PyFBA/Biochemistry/media/__init__.py -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,023 creating build/lib/PyFBA/Biochemistry/SEED 2021-06-17T08:31:09,024 copying PyFBA/Biochemistry/SEED/__init__.py -> build/lib/PyFBA/Biochemistry/SEED 2021-06-17T08:31:09,028 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:09,029 copying PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:09,033 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:09,034 copying PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:09,038 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates 2021-06-17T08:31:09,039 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates 2021-06-17T08:31:09,043 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core 2021-06-17T08:31:09,044 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core 2021-06-17T08:31:09,048 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial 2021-06-17T08:31:09,049 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial 2021-06-17T08:31:09,053 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative 2021-06-17T08:31:09,054 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative 2021-06-17T08:31:09,058 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi 2021-06-17T08:31:09,059 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi 2021-06-17T08:31:09,063 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive 2021-06-17T08:31:09,064 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive 2021-06-17T08:31:09,068 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria 2021-06-17T08:31:09,069 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria/__init__.py -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria 2021-06-17T08:31:09,073 creating build/lib/PyFBA/Biochemistry/SEED/Subsystems 2021-06-17T08:31:09,075 copying PyFBA/Biochemistry/SEED/Subsystems/__init__.py -> build/lib/PyFBA/Biochemistry/SEED/Subsystems 2021-06-17T08:31:09,078 running egg_info 2021-06-17T08:31:09,101 writing PyFBA.egg-info/PKG-INFO 2021-06-17T08:31:09,105 writing dependency_links to PyFBA.egg-info/dependency_links.txt 2021-06-17T08:31:09,107 writing top-level names to PyFBA.egg-info/top_level.txt 2021-06-17T08:31:09,109 writing entry points to PyFBA.egg-info/entry_points.txt 2021-06-17T08:31:09,110 writing requirements to PyFBA.egg-info/requires.txt 2021-06-17T08:31:09,143 reading manifest file 'PyFBA.egg-info/SOURCES.txt' 2021-06-17T08:31:09,158 reading manifest template 'MANIFEST.in' 2021-06-17T08:31:09,339 writing manifest file 'PyFBA.egg-info/SOURCES.txt' 2021-06-17T08:31:09,371 copying PyFBA/tests/reaction_list.txt -> build/lib/PyFBA/tests 2021-06-17T08:31:09,375 copying PyFBA/tests/roles.txt -> build/lib/PyFBA/tests 2021-06-17T08:31:09,379 copying PyFBA/Biochemistry/ModelSEEDDatabase/ModelSEEDLICENSE.txt -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:09,383 copying PyFBA/Biochemistry/ModelSEEDDatabase/README.md -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:09,386 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/__pycache__ 2021-06-17T08:31:09,387 copying PyFBA/Biochemistry/ModelSEEDDatabase/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/__pycache__ 2021-06-17T08:31:09,391 copying PyFBA/Biochemistry/media/ArgonneLB.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,394 copying PyFBA/Biochemistry/media/MOPS_NoC_2-Deoxy-D-Ribose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,397 copying PyFBA/Biochemistry/media/MOPS_NoC_4-Hydroxy-Phenylacetate.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,400 copying PyFBA/Biochemistry/media/MOPS_NoC_Acetic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,404 copying PyFBA/Biochemistry/media/MOPS_NoC_Adenosine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,407 copying PyFBA/Biochemistry/media/MOPS_NoC_Adonitol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,410 copying PyFBA/Biochemistry/media/MOPS_NoC_Alpha-D-Glucose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,413 copying PyFBA/Biochemistry/media/MOPS_NoC_Alpha-D-Lactose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,417 copying PyFBA/Biochemistry/media/MOPS_NoC_Cellobiose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,420 copying PyFBA/Biochemistry/media/MOPS_NoC_Citric_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,423 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Alanine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,426 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Arabinose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,430 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Arabitol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,433 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Asparagine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,436 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Aspartic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,439 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Cysteine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,442 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Fructose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,446 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Galactose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,449 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Glucosamine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,452 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Glucose-6-phosphate.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,455 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Glucose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,458 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Glutamic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,461 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Mannose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,464 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Ribose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,468 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Serine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,471 copying PyFBA/Biochemistry/media/MOPS_NoC_D-Xylose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,474 copying PyFBA/Biochemistry/media/MOPS_NoC_Dulcitol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,477 copying PyFBA/Biochemistry/media/MOPS_NoC_Erythritol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,480 copying PyFBA/Biochemistry/media/MOPS_NoC_Glycerol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,483 copying PyFBA/Biochemistry/media/MOPS_NoC_Glycine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,487 copying PyFBA/Biochemistry/media/MOPS_NoC_Inosine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,490 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Alanine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,493 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Arabinose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,496 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Arabitol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,499 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Asparagine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,503 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Aspartic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,506 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Cysteic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,509 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Cysteine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,512 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Fucose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,515 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Glutamic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,518 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Glutamine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,522 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Isoleucine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,525 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Leucine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,528 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Lysine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,531 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Methionine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,535 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Phenylalanine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,538 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Pyro-Glutamic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,541 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Rhamnose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,544 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Serine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,547 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Sorbose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,550 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Threonine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,554 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Tryptophan.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,557 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Valine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,560 copying PyFBA/Biochemistry/media/MOPS_NoC_L-Xylose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,563 copying PyFBA/Biochemistry/media/MOPS_NoC_Lactic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,567 copying PyFBA/Biochemistry/media/MOPS_NoC_Lactulose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,571 copying PyFBA/Biochemistry/media/MOPS_NoC_Malic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,574 copying PyFBA/Biochemistry/media/MOPS_NoC_Melibiose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,578 copying PyFBA/Biochemistry/media/MOPS_NoC_Myo-Inositol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,581 copying PyFBA/Biochemistry/media/MOPS_NoC_Negative_Control.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,584 copying PyFBA/Biochemistry/media/MOPS_NoC_Oxalic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,588 copying PyFBA/Biochemistry/media/MOPS_NoC_Potassium_Sorbate.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,591 copying PyFBA/Biochemistry/media/MOPS_NoC_Propionate.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,595 copying PyFBA/Biochemistry/media/MOPS_NoC_Putrescine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,598 copying PyFBA/Biochemistry/media/MOPS_NoC_Pyruvate.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,601 copying PyFBA/Biochemistry/media/MOPS_NoC_Quinate.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,605 copying PyFBA/Biochemistry/media/MOPS_NoC_Raffinose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,608 copying PyFBA/Biochemistry/media/MOPS_NoC_Salicoside.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,611 copying PyFBA/Biochemistry/media/MOPS_NoC_Succinate.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,628 copying PyFBA/Biochemistry/media/MOPS_NoC_Sucrose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,633 copying PyFBA/Biochemistry/media/MOPS_NoC_Thymidine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,639 copying PyFBA/Biochemistry/media/MOPS_NoC_Trehalose.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,643 copying PyFBA/Biochemistry/media/MOPS_NoC_Xylitol.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,647 copying PyFBA/Biochemistry/media/MOPS_NoN_Adenine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,650 copying PyFBA/Biochemistry/media/MOPS_NoN_Adenosine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,654 copying PyFBA/Biochemistry/media/MOPS_NoN_Allantoin.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,657 copying PyFBA/Biochemistry/media/MOPS_NoN_Beta-Phenylethylamine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,661 copying PyFBA/Biochemistry/media/MOPS_NoN_Biuret.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,664 copying PyFBA/Biochemistry/media/MOPS_NoN_Cytidine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,668 copying PyFBA/Biochemistry/media/MOPS_NoN_Cytosine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,671 copying PyFBA/Biochemistry/media/MOPS_NoN_D-Methionine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,675 copying PyFBA/Biochemistry/media/MOPS_NoN_D-Valine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,678 copying PyFBA/Biochemistry/media/MOPS_NoN_Glycine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,682 copying PyFBA/Biochemistry/media/MOPS_NoN_Guanidine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,685 copying PyFBA/Biochemistry/media/MOPS_NoN_Histamine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,702 copying PyFBA/Biochemistry/media/MOPS_NoN_Inosine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,708 copying PyFBA/Biochemistry/media/MOPS_NoN_L-Arginine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,713 copying PyFBA/Biochemistry/media/MOPS_NoN_L-Glutathione.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,719 copying PyFBA/Biochemistry/media/MOPS_NoN_L-Histidine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,724 copying PyFBA/Biochemistry/media/MOPS_NoN_L-Proline.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,728 copying PyFBA/Biochemistry/media/MOPS_NoN_L-Pyro-Glutamic_Acid.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,731 copying PyFBA/Biochemistry/media/MOPS_NoN_N-Acetyl-D-Glucosamine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,735 copying PyFBA/Biochemistry/media/MOPS_NoN_Negative_Control.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,738 copying PyFBA/Biochemistry/media/MOPS_NoN_Thiourea.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,741 copying PyFBA/Biochemistry/media/MOPS_NoN_Thymine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,745 copying PyFBA/Biochemistry/media/MOPS_NoN_Tyramine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,748 copying PyFBA/Biochemistry/media/MOPS_NoN_Uridine.txt -> build/lib/PyFBA/Biochemistry/media 2021-06-17T08:31:09,751 creating build/lib/PyFBA/Biochemistry/SEED/__pycache__ 2021-06-17T08:31:09,752 copying PyFBA/Biochemistry/SEED/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/SEED/__pycache__ 2021-06-17T08:31:09,756 copying PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/compounds.json -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:11,121 copying PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/reactions.json -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:14,078 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__pycache__ 2021-06-17T08:31:14,079 copying PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__pycache__ 2021-06-17T08:31:14,083 copying PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/Complexes.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:14,112 copying PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/Roles.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:14,236 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__pycache__ 2021-06-17T08:31:14,238 copying PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__pycache__ 2021-06-17T08:31:14,241 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__pycache__ 2021-06-17T08:31:14,242 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__pycache__ 2021-06-17T08:31:14,247 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/Reactions.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core 2021-06-17T08:31:14,270 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__pycache__ 2021-06-17T08:31:14,272 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__pycache__ 2021-06-17T08:31:14,275 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/Reactions.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial 2021-06-17T08:31:14,317 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__pycache__ 2021-06-17T08:31:14,318 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__pycache__ 2021-06-17T08:31:14,322 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/Reactions.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative 2021-06-17T08:31:14,348 creating build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__pycache__ 2021-06-17T08:31:14,349 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__pycache__ 2021-06-17T08:31:14,353 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi/Reactions.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi 2021-06-17T08:31:14,384 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive/Reactions.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive 2021-06-17T08:31:14,409 copying PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria/Reactions.tsv -> build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria 2021-06-17T08:31:14,452 copying PyFBA/Biochemistry/SEED/Subsystems/SS_functions.txt -> build/lib/PyFBA/Biochemistry/SEED/Subsystems 2021-06-17T08:31:14,622 creating build/lib/PyFBA/Biochemistry/SEED/Subsystems/__pycache__ 2021-06-17T08:31:14,623 copying PyFBA/Biochemistry/SEED/Subsystems/__pycache__/__init__.cpython-39.pyc -> build/lib/PyFBA/Biochemistry/SEED/Subsystems/__pycache__ 2021-06-17T08:31:14,661 installing to build/bdist.linux-armv7l/wheel 2021-06-17T08:31:14,662 running install 2021-06-17T08:31:14,663 running install_lib 2021-06-17T08:31:14,670 creating build/bdist.linux-armv7l 2021-06-17T08:31:14,670 creating build/bdist.linux-armv7l/wheel 2021-06-17T08:31:14,673 creating build/bdist.linux-armv7l/wheel/PyFBA 2021-06-17T08:31:14,675 creating build/bdist.linux-armv7l/wheel/PyFBA/metabolism 2021-06-17T08:31:14,677 copying build/lib/PyFBA/metabolism/compound.py -> build/bdist.linux-armv7l/wheel/PyFBA/metabolism 2021-06-17T08:31:14,681 copying build/lib/PyFBA/metabolism/biomass.py -> build/bdist.linux-armv7l/wheel/PyFBA/metabolism 2021-06-17T08:31:14,685 copying build/lib/PyFBA/metabolism/enzyme.py -> build/bdist.linux-armv7l/wheel/PyFBA/metabolism 2021-06-17T08:31:14,689 copying build/lib/PyFBA/metabolism/reaction.py -> build/bdist.linux-armv7l/wheel/PyFBA/metabolism 2021-06-17T08:31:14,694 copying build/lib/PyFBA/metabolism/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/metabolism 2021-06-17T08:31:14,697 creating build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,699 copying build/lib/PyFBA/gapfill/probability.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,705 copying build/lib/PyFBA/gapfill/subsystem.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,710 copying build/lib/PyFBA/gapfill/roles.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,715 copying build/lib/PyFBA/gapfill/reaction_minimization.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,720 copying build/lib/PyFBA/gapfill/essentials.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,723 copying build/lib/PyFBA/gapfill/limit_reactions.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,726 copying build/lib/PyFBA/gapfill/linked_reactions.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,729 copying build/lib/PyFBA/gapfill/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,732 copying build/lib/PyFBA/gapfill/orphan_compound.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,735 copying build/lib/PyFBA/gapfill/media.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,738 copying build/lib/PyFBA/gapfill/ecnumbers.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,741 copying build/lib/PyFBA/gapfill/bisections.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,744 copying build/lib/PyFBA/gapfill/maps_to_proteins.py -> build/bdist.linux-armv7l/wheel/PyFBA/gapfill 2021-06-17T08:31:14,747 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry 2021-06-17T08:31:14,750 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:14,751 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/README.md -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:14,755 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:14,757 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/compounds.json -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:16,136 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__pycache__ 2021-06-17T08:31:16,137 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__pycache__ 2021-06-17T08:31:16,140 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:16,143 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry/reactions.json -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Biochemistry 2021-06-17T08:31:19,075 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/__pycache__ 2021-06-17T08:31:19,076 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/__pycache__ 2021-06-17T08:31:19,079 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:19,083 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:19,084 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/Complexes.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:19,117 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__pycache__ 2021-06-17T08:31:19,118 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__pycache__ 2021-06-17T08:31:19,122 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:19,124 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations/Roles.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Annotations 2021-06-17T08:31:19,249 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/ModelSEEDLICENSE.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase 2021-06-17T08:31:19,253 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates 2021-06-17T08:31:19,255 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core 2021-06-17T08:31:19,258 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__pycache__ 2021-06-17T08:31:19,259 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__pycache__ 2021-06-17T08:31:19,262 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core 2021-06-17T08:31:19,265 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core/Reactions.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Core 2021-06-17T08:31:19,285 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__pycache__ 2021-06-17T08:31:19,286 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__pycache__ 2021-06-17T08:31:19,290 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial 2021-06-17T08:31:19,292 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__pycache__ 2021-06-17T08:31:19,293 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__pycache__ 2021-06-17T08:31:19,296 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial 2021-06-17T08:31:19,299 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial/Reactions.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Microbial 2021-06-17T08:31:19,341 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative 2021-06-17T08:31:19,343 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__pycache__ 2021-06-17T08:31:19,345 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__pycache__ 2021-06-17T08:31:19,348 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative 2021-06-17T08:31:19,351 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative/Reactions.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramNegative 2021-06-17T08:31:19,373 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi 2021-06-17T08:31:19,374 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi 2021-06-17T08:31:19,377 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi/Reactions.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Fungi 2021-06-17T08:31:19,405 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive 2021-06-17T08:31:19,406 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive 2021-06-17T08:31:19,409 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive/Reactions.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/GramPositive 2021-06-17T08:31:19,432 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates 2021-06-17T08:31:19,438 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria 2021-06-17T08:31:19,440 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria 2021-06-17T08:31:19,444 copying build/lib/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria/Reactions.tsv -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/ModelSEEDDatabase/Templates/Mycobacteria 2021-06-17T08:31:19,485 copying build/lib/PyFBA/Biochemistry/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry 2021-06-17T08:31:19,491 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,492 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Glycine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,495 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Mannose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,498 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Lysine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,501 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Alpha-D-Lactose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,503 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Galactose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,506 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Putrescine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,509 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Alpha-D-Glucose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,512 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Erythritol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,514 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Methionine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,517 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Alanine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,520 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Adenosine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,523 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Biuret.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,525 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Oxalic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,528 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Cysteine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,531 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Arabinose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,534 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Adenine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,537 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Aspartic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,539 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_4-Hydroxy-Phenylacetate.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,542 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Xylitol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,545 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Threonine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,547 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Glycine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,550 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Isoleucine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,553 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Acetic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,556 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Glucose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,558 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Tyramine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,561 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Aspartic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,564 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Serine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,567 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Serine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,570 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Beta-Phenylethylamine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,572 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Thiourea.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,575 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Quinate.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,578 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Cysteine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,581 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Tryptophan.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,584 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_L-Proline.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,587 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_2-Deoxy-D-Ribose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,589 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Potassium_Sorbate.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,592 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_L-Pyro-Glutamic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,595 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Xylose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,598 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Lactic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,600 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Glucose-6-phosphate.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,603 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Leucine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,606 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Xylose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,608 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Negative_Control.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,611 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Myo-Inositol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,614 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Pyro-Glutamic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,617 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Raffinose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,619 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Lactulose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,622 copying build/lib/PyFBA/Biochemistry/media/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,626 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Glycerol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,628 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Arabitol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,631 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Cytidine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,634 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Allantoin.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,637 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Melibiose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,639 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Rhamnose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,642 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Glutamine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,645 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Succinate.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,648 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Uridine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,650 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Glucosamine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,653 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Valine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,656 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Alanine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,659 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Malic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,661 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Cytosine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,664 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_N-Acetyl-D-Glucosamine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,667 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Citric_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,670 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Negative_Control.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,672 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Trehalose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,675 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Arabinose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,678 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Glutamic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,681 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Adonitol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,684 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Guanidine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,687 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Dulcitol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,689 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_L-Histidine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,692 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Propionate.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,695 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Glutamic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,698 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Inosine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,700 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Fucose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,703 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Arabitol.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,706 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Cysteic_Acid.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,709 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Sorbose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,712 copying build/lib/PyFBA/Biochemistry/media/ArgonneLB.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,715 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Histamine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,717 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Inosine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,720 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Phenylalanine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,723 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_L-Asparagine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,726 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_L-Arginine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,729 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Sucrose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,732 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_D-Methionine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,734 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Cellobiose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,737 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_D-Valine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,740 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Adenosine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,743 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Fructose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,745 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Asparagine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,748 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Pyruvate.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,751 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_Thymine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,754 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Thymidine.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,757 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_Salicoside.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,759 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoN_L-Glutathione.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,762 copying build/lib/PyFBA/Biochemistry/media/MOPS_NoC_D-Ribose.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/media 2021-06-17T08:31:19,766 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED 2021-06-17T08:31:19,768 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED/__pycache__ 2021-06-17T08:31:19,769 copying build/lib/PyFBA/Biochemistry/SEED/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED/__pycache__ 2021-06-17T08:31:19,772 copying build/lib/PyFBA/Biochemistry/SEED/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED 2021-06-17T08:31:19,776 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED/Subsystems 2021-06-17T08:31:19,777 copying build/lib/PyFBA/Biochemistry/SEED/Subsystems/SS_functions.txt -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED/Subsystems 2021-06-17T08:31:19,952 creating build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED/Subsystems/__pycache__ 2021-06-17T08:31:19,954 copying build/lib/PyFBA/Biochemistry/SEED/Subsystems/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED/Subsystems/__pycache__ 2021-06-17T08:31:19,958 copying build/lib/PyFBA/Biochemistry/SEED/Subsystems/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/Biochemistry/SEED/Subsystems 2021-06-17T08:31:19,965 creating build/bdist.linux-armv7l/wheel/PyFBA/fba 2021-06-17T08:31:19,967 copying build/lib/PyFBA/fba/create_stoichiometric_matrix.py -> build/bdist.linux-armv7l/wheel/PyFBA/fba 2021-06-17T08:31:19,973 copying build/lib/PyFBA/fba/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/fba 2021-06-17T08:31:19,977 copying build/lib/PyFBA/fba/external_reactions.py -> build/bdist.linux-armv7l/wheel/PyFBA/fba 2021-06-17T08:31:19,981 copying build/lib/PyFBA/fba/bounds.py -> build/bdist.linux-armv7l/wheel/PyFBA/fba 2021-06-17T08:31:19,984 copying build/lib/PyFBA/fba/run_fba.py -> build/bdist.linux-armv7l/wheel/PyFBA/fba 2021-06-17T08:31:19,987 copying build/lib/PyFBA/fba/fluxes.py -> build/bdist.linux-armv7l/wheel/PyFBA/fba 2021-06-17T08:31:19,991 creating build/bdist.linux-armv7l/wheel/PyFBA/cmd 2021-06-17T08:31:19,992 copying build/lib/PyFBA/cmd/gapfill_from_roles.py -> build/bdist.linux-armv7l/wheel/PyFBA/cmd 2021-06-17T08:31:19,997 copying build/lib/PyFBA/cmd/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/cmd 2021-06-17T08:31:19,1000 copying build/lib/PyFBA/cmd/entry.py -> build/bdist.linux-armv7l/wheel/PyFBA/cmd 2021-06-17T08:31:20,003 copying build/lib/PyFBA/cmd/fluxes.py -> build/bdist.linux-armv7l/wheel/PyFBA/cmd 2021-06-17T08:31:20,006 copying build/lib/PyFBA/version.py -> build/bdist.linux-armv7l/wheel/PyFBA 2021-06-17T08:31:20,009 creating build/bdist.linux-armv7l/wheel/PyFBA/model 2021-06-17T08:31:20,011 copying build/lib/PyFBA/model/build_model.py -> build/bdist.linux-armv7l/wheel/PyFBA/model 2021-06-17T08:31:20,015 copying build/lib/PyFBA/model/fba.py -> build/bdist.linux-armv7l/wheel/PyFBA/model 2021-06-17T08:31:20,018 copying build/lib/PyFBA/model/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/model 2021-06-17T08:31:20,021 copying build/lib/PyFBA/model/model.py -> build/bdist.linux-armv7l/wheel/PyFBA/model 2021-06-17T08:31:20,026 copying build/lib/PyFBA/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA 2021-06-17T08:31:20,030 creating build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,031 copying build/lib/PyFBA/parse/config.py -> build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,034 copying build/lib/PyFBA/parse/model_seed.py -> build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,038 copying build/lib/PyFBA/parse/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,041 copying build/lib/PyFBA/parse/rast.py -> build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,044 copying build/lib/PyFBA/parse/model_seed_solr.py -> build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,049 copying build/lib/PyFBA/parse/read_media.py -> build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,052 copying build/lib/PyFBA/parse/SBML.py -> build/bdist.linux-armv7l/wheel/PyFBA/parse 2021-06-17T08:31:20,057 creating build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,059 copying build/lib/PyFBA/tests/test_lp.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,062 copying build/lib/PyFBA/tests/test_reactions_and_roles.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,065 copying build/lib/PyFBA/tests/roles.txt -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,068 copying build/lib/PyFBA/tests/test_model_seed_parsing.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,071 copying build/lib/PyFBA/tests/test_biomass_equation.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,074 copying build/lib/PyFBA/tests/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,077 copying build/lib/PyFBA/tests/test_read_media.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,079 copying build/lib/PyFBA/tests/test_glpk_solver.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,083 copying build/lib/PyFBA/tests/test_reaction.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,087 copying build/lib/PyFBA/tests/test_bisection.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,090 copying build/lib/PyFBA/tests/test_bounds.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,093 copying build/lib/PyFBA/tests/reaction_list.txt -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,096 copying build/lib/PyFBA/tests/test_fba.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,099 copying build/lib/PyFBA/tests/assertDeepAlmostEqual.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,103 copying build/lib/PyFBA/tests/test_enzyme.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,106 copying build/lib/PyFBA/tests/test_model_seed_object.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,109 copying build/lib/PyFBA/tests/test_suggestions.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,112 copying build/lib/PyFBA/tests/test_compound.py -> build/bdist.linux-armv7l/wheel/PyFBA/tests 2021-06-17T08:31:20,116 creating build/bdist.linux-armv7l/wheel/PyFBA/logs 2021-06-17T08:31:20,117 copying build/lib/PyFBA/logs/messaging.py -> build/bdist.linux-armv7l/wheel/PyFBA/logs 2021-06-17T08:31:20,120 copying build/lib/PyFBA/logs/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/logs 2021-06-17T08:31:20,123 copying build/lib/PyFBA/logs/errors.py -> build/bdist.linux-armv7l/wheel/PyFBA/logs 2021-06-17T08:31:20,126 copying build/lib/PyFBA/logs/formatting.py -> build/bdist.linux-armv7l/wheel/PyFBA/logs 2021-06-17T08:31:20,130 creating build/bdist.linux-armv7l/wheel/PyFBA/lp 2021-06-17T08:31:20,131 copying build/lib/PyFBA/lp/glpk_solver.py -> build/bdist.linux-armv7l/wheel/PyFBA/lp 2021-06-17T08:31:20,135 copying build/lib/PyFBA/lp/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/lp 2021-06-17T08:31:20,138 creating build/bdist.linux-armv7l/wheel/PyFBA/filters 2021-06-17T08:31:20,140 copying build/lib/PyFBA/filters/reactions_and_proteins.py -> build/bdist.linux-armv7l/wheel/PyFBA/filters 2021-06-17T08:31:20,143 copying build/lib/PyFBA/filters/roles_and_complexes.py -> build/bdist.linux-armv7l/wheel/PyFBA/filters 2021-06-17T08:31:20,146 copying build/lib/PyFBA/filters/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/filters 2021-06-17T08:31:20,149 copying build/lib/PyFBA/filters/roles_and_reactions.py -> build/bdist.linux-armv7l/wheel/PyFBA/filters 2021-06-17T08:31:20,153 creating build/bdist.linux-armv7l/wheel/PyFBA/model_seed 2021-06-17T08:31:20,154 copying build/lib/PyFBA/model_seed/model_data.py -> build/bdist.linux-armv7l/wheel/PyFBA/model_seed 2021-06-17T08:31:20,158 copying build/lib/PyFBA/model_seed/__init__.py -> build/bdist.linux-armv7l/wheel/PyFBA/model_seed 2021-06-17T08:31:20,162 creating build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,163 copying build/lib/example_code/statistics.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,167 copying build/lib/example_code/find_reactions_by_compound.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,170 copying build/lib/example_code/fba_from_reactions.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,173 copying build/lib/example_code/rast_annotations_to_reactions.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,176 copying build/lib/example_code/reaction_info.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,179 copying build/lib/example_code/gapfill_from_reactions.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,183 copying build/lib/example_code/sbml_to_fba.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,186 copying build/lib/example_code/group_reactions.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,189 copying build/lib/example_code/__init__.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,192 copying build/lib/example_code/reaction_statistics.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,195 copying build/lib/example_code/find_roles_by_compound.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,198 copying build/lib/example_code/assigned_functions_to_reactions.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,201 copying build/lib/example_code/gapfill_from_reactions_multiple_conditions.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,205 copying build/lib/example_code/test_individual_reactions.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,208 copying build/lib/example_code/RAST_neighboring_roles.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,211 copying build/lib/example_code/run_fba_sbml.py -> build/bdist.linux-armv7l/wheel/example_code 2021-06-17T08:31:20,214 running install_egg_info 2021-06-17T08:31:20,231 Copying PyFBA.egg-info to build/bdist.linux-armv7l/wheel/PyFBA-2.51-py3.5.egg-info 2021-06-17T08:31:20,256 running install_scripts 2021-06-17T08:31:20,432 creating build/bdist.linux-armv7l/wheel/PyFBA-2.51.dist-info/WHEEL 2021-06-17T08:31:32,215 Building wheel for pyfba (setup.py): finished with status 'done' 2021-06-17T08:31:32,397 Created wheel for pyfba: filename=PyFBA-2.51-py3-none-any.whl size=12618111 sha256=310920c081e45ee53c351dd84e064cd62b52470345ec5b4f729cffd1099c5ad1 2021-06-17T08:31:32,398 Stored in directory: /tmp/pip-ephem-wheel-cache-bstazmqv/wheels/45/b6/01/a8f706501600f4407dcc6452de56f9c0a803c7c6275979d877 2021-06-17T08:31:32,437 Successfully built pyfba 2021-06-17T08:31:35,948 Removed build tracker: '/tmp/pip-req-tracker-2jfgx_8w'