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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-06-20T15:59:53,448 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-06-20T15:59:53,448 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-06-20T15:59:53,448 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-06-20T15:59:53,448 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-06-20T15:59:53,449 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-06-20T15:59:53,449 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-06-20T15:59:53,449 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-06-20T15:59:53,450 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-06-20T15:59:53,450 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-06-20T15:59:53,472 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-06-20T15:59:53,487 Collecting jcvi==1.1.13 2021-06-20T15:59:53,489 Created temporary directory: /tmp/pip-unpack-qje0d2vk 2021-06-20T15:59:53,532 Downloading jcvi-1.1.13.tar.gz (799 kB) 2021-06-20T15:59:54,267 Added jcvi==1.1.13 from https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d to build tracker '/tmp/pip-req-tracker-9tbtqk5e' 2021-06-20T15:59:54,268 Running setup.py (path:/tmp/pip-wheel-ujk_nqdg/jcvi_2067ba48fa904fa194ae2736569dbded/setup.py) egg_info for package jcvi 2021-06-20T15:59:54,269 Created temporary directory: /tmp/pip-pip-egg-info-oppzx26e 2021-06-20T15:59:54,269 Running command python setup.py egg_info 2021-06-20T15:59:55,930 running egg_info 2021-06-20T15:59:55,932 creating /tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info 2021-06-20T15:59:55,933 writing /tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info/PKG-INFO 2021-06-20T15:59:55,937 writing dependency_links to /tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info/dependency_links.txt 2021-06-20T15:59:55,939 writing requirements to /tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info/requires.txt 2021-06-20T15:59:55,941 writing top-level names to /tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info/top_level.txt 2021-06-20T15:59:55,942 writing manifest file '/tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info/SOURCES.txt' 2021-06-20T15:59:55,967 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-06-20T15:59:55,970 reading manifest file '/tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info/SOURCES.txt' 2021-06-20T15:59:55,972 reading manifest template 'MANIFEST.in' 2021-06-20T15:59:55,984 writing manifest file '/tmp/pip-pip-egg-info-oppzx26e/jcvi.egg-info/SOURCES.txt' 2021-06-20T15:59:55,985 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:463: UserWarning: Normalizing 'v1.1.13' to '1.1.13' 2021-06-20T15:59:55,986 warnings.warn(tmpl.format(**locals())) 2021-06-20T15:59:56,084 Source in /tmp/pip-wheel-ujk_nqdg/jcvi_2067ba48fa904fa194ae2736569dbded has version 1.1.13, which satisfies requirement jcvi==1.1.13 from https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d 2021-06-20T15:59:56,085 Removed jcvi==1.1.13 from https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d from build tracker '/tmp/pip-req-tracker-9tbtqk5e' 2021-06-20T15:59:56,090 Created temporary directory: /tmp/pip-unpack-wgmbdtof 2021-06-20T15:59:56,091 Building wheels for collected packages: jcvi 2021-06-20T15:59:56,095 Created temporary directory: /tmp/pip-wheel-bj43qmf3 2021-06-20T15:59:56,095 Building wheel for jcvi (setup.py): started 2021-06-20T15:59:56,096 Destination directory: /tmp/pip-wheel-bj43qmf3 2021-06-20T15:59:56,096 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ujk_nqdg/jcvi_2067ba48fa904fa194ae2736569dbded/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ujk_nqdg/jcvi_2067ba48fa904fa194ae2736569dbded/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bj43qmf3 2021-06-20T15:59:57,638 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:463: UserWarning: Normalizing 'v1.1.13' to '1.1.13' 2021-06-20T15:59:57,638 warnings.warn(tmpl.format(**locals())) 2021-06-20T15:59:57,716 running bdist_wheel 2021-06-20T15:59:57,720 running build 2021-06-20T15:59:57,721 running build_py 2021-06-20T15:59:57,726 creating build 2021-06-20T15:59:57,727 creating build/lib.linux-armv7l-3.7 2021-06-20T15:59:57,728 creating build/lib.linux-armv7l-3.7/jcvi 2021-06-20T15:59:57,729 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2021-06-20T15:59:57,731 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2021-06-20T15:59:57,733 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,734 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,737 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,739 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,742 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,745 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,748 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,751 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,753 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,756 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,759 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,761 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,763 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T15:59:57,767 creating build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,768 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,771 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,774 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,777 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,781 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,785 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,788 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,791 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,792 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,794 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,798 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T15:59:57,803 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,804 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,807 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,810 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,812 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,815 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,818 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,820 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,823 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,826 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,829 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,831 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,833 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,837 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,840 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,842 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,845 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,847 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,850 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,853 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,856 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,858 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,860 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,862 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T15:59:57,867 creating build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,868 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,871 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,875 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,877 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,880 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,883 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,885 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,888 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,891 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,895 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,897 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,900 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,902 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,906 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,907 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,911 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,913 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T15:59:57,917 creating build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,918 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,920 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,923 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,925 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,928 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,930 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,934 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,938 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,940 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,943 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,946 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,948 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,951 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,953 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,956 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,958 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,962 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,964 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,967 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,970 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,972 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,975 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,977 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,979 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,981 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,983 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T15:59:57,987 creating build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:57,988 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:57,991 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:57,993 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:57,995 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:57,997 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,000 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,002 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,004 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,007 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,010 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,012 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,013 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,015 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T15:59:58,019 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,020 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,023 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,025 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,030 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,032 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,034 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,036 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,039 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,042 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,044 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,046 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,051 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,055 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,057 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,060 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,063 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,066 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,068 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,070 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,073 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,075 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,080 creating build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,081 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,084 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,088 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,091 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,094 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,096 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,098 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,102 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,108 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,110 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,113 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,115 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,119 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,121 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,124 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,126 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,129 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,131 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,133 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,136 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,138 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,140 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,142 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,145 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,147 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,149 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,154 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,155 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,158 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,160 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,162 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,165 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,167 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,170 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,173 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,175 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,176 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,178 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,180 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T15:59:58,183 creating build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,184 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,187 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,190 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,193 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,196 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,199 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,201 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,204 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,206 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,208 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T15:59:58,211 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,212 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,213 running egg_info 2021-06-20T15:59:58,222 writing jcvi.egg-info/PKG-INFO 2021-06-20T15:59:58,225 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-06-20T15:59:58,227 writing requirements to jcvi.egg-info/requires.txt 2021-06-20T15:59:58,228 writing top-level names to jcvi.egg-info/top_level.txt 2021-06-20T15:59:58,249 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-06-20T15:59:58,252 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-06-20T15:59:58,258 reading manifest template 'MANIFEST.in' 2021-06-20T15:59:58,273 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-06-20T15:59:58,279 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T15:59:58,282 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T15:59:58,284 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,288 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,293 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,296 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,299 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,303 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,305 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,307 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,310 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,312 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,316 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,319 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T15:59:58,337 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2021-06-20T15:59:58,338 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.1.13' 2021-06-20T15:59:58,338 running build_ext 2021-06-20T15:59:58,406 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-06-20T15:59:58,994 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ujk_nqdg/jcvi_2067ba48fa904fa194ae2736569dbded/jcvi/assembly/chic.pyx 2021-06-20T15:59:58,994 tree = Parsing.p_module(s, pxd, full_module_name) 2021-06-20T16:00:00,718 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-06-20T16:00:00,724 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ujk_nqdg/jcvi_2067ba48fa904fa194ae2736569dbded/jcvi/formats/cblast.pyx 2021-06-20T16:00:00,724 tree = Parsing.p_module(s, pxd, full_module_name) 2021-06-20T16:00:01,330 building 'jcvi.assembly.chic' extension 2021-06-20T16:00:01,330 creating build/temp.linux-armv7l-3.7 2021-06-20T16:00:01,330 creating build/temp.linux-armv7l-3.7/jcvi 2021-06-20T16:00:01,330 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:00:01,330 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2021-06-20T16:00:01,711 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944, 2021-06-20T16:00:01,711 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-06-20T16:00:01,712 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-06-20T16:00:01,712 from jcvi/assembly/chic.c:612: 2021-06-20T16:00:01,712 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-06-20T16:00:01,712 #warning "Using deprecated NumPy API, disable it with " \ 2021-06-20T16:00:01,712 ^~~~~~~ 2021-06-20T16:00:05,350 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2021-06-20T16:00:05,494 building 'jcvi.formats.cblast' extension 2021-06-20T16:00:05,495 creating build/temp.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:00:05,495 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2021-06-20T16:00:12,458 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2021-06-20T16:00:12,611 installing to build/bdist.linux-armv7l/wheel 2021-06-20T16:00:12,611 running install 2021-06-20T16:00:12,612 running install_lib 2021-06-20T16:00:12,616 creating build/bdist.linux-armv7l 2021-06-20T16:00:12,616 creating build/bdist.linux-armv7l/wheel 2021-06-20T16:00:12,618 creating build/bdist.linux-armv7l/wheel/jcvi 2021-06-20T16:00:12,619 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,620 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,623 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,626 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,628 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,631 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,633 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,636 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,638 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,641 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,643 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,645 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,647 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:00:12,651 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,652 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,654 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,658 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,660 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,665 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,667 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,670 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,672 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,674 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,676 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,679 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:00:12,683 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,684 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,686 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,690 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,692 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,695 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,697 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,699 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,702 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,705 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,707 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,709 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,712 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,714 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,717 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,719 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,722 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,724 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,727 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,730 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,731 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,733 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,736 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,738 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:00:12,742 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,743 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,745 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,749 copying build/lib.linux-armv7l-3.7/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,752 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,755 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,757 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,759 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,763 copying build/lib.linux-armv7l-3.7/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,766 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,770 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,773 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,775 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,778 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,781 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,783 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,786 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,788 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:00:12,791 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,792 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,795 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,797 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,799 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,802 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,804 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,809 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,812 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,815 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,817 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,820 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,822 copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,825 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,827 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,829 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,832 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,835 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,837 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,839 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,843 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,845 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,848 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,850 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,852 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,854 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,856 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:00:12,859 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,860 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,863 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,867 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,867 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,870 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,873 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,875 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,879 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,881 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,885 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,887 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,890 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,893 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,895 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,900 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,902 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:00:12,905 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,907 copying build/lib.linux-armv7l-3.7/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,909 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,912 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,915 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,917 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,920 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,923 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,925 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,927 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,929 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:00:12,932 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,933 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,936 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,939 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,944 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,947 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,949 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,951 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,954 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,957 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,960 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,969 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,972 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,975 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,979 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,982 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,985 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,988 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,991 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,994 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,996 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:12,998 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:13,001 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:13,004 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:00:13,009 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,010 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,013 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,017 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,021 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,037 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,040 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,042 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,044 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,049 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,055 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,057 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,061 copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,064 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,070 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,073 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,076 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,079 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,081 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,084 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,086 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,088 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,092 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,097 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,099 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,101 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,104 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,106 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,108 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:00:13,114 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-06-20T16:00:13,117 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,118 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,120 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,123 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,125 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,128 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,131 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,134 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,137 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,139 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,141 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,142 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,145 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:00:13,147 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-06-20T16:00:13,149 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,150 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,153 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,157 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,160 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,164 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,167 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,169 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,172 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,174 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,176 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:00:13,178 running install_egg_info 2021-06-20T16:00:13,188 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.13-py3.7.egg-info 2021-06-20T16:00:13,203 running install_scripts 2021-06-20T16:00:13,270 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-06-20T16:00:13,275 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.13.dist-info/WHEEL 2021-06-20T16:00:13,277 creating '/tmp/pip-wheel-bj43qmf3/jcvi-1.1.13-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-06-20T16:00:13,280 adding 'jcvi/__init__.py' 2021-06-20T16:00:13,281 adding 'jcvi/_version.py' 2021-06-20T16:00:13,283 adding 'jcvi/algorithms/__init__.py' 2021-06-20T16:00:13,284 adding 'jcvi/algorithms/__main__.py' 2021-06-20T16:00:13,286 adding 'jcvi/algorithms/ec.py' 2021-06-20T16:00:13,288 adding 'jcvi/algorithms/formula.py' 2021-06-20T16:00:13,290 adding 'jcvi/algorithms/graph.py' 2021-06-20T16:00:13,292 adding 'jcvi/algorithms/lis.py' 2021-06-20T16:00:13,296 adding 'jcvi/algorithms/lpsolve.py' 2021-06-20T16:00:13,298 adding 'jcvi/algorithms/matrix.py' 2021-06-20T16:00:13,299 adding 'jcvi/algorithms/maxsum.py' 2021-06-20T16:00:13,301 adding 'jcvi/algorithms/ml.py' 2021-06-20T16:00:13,302 adding 'jcvi/algorithms/supermap.py' 2021-06-20T16:00:13,304 adding 'jcvi/algorithms/tsp.py' 2021-06-20T16:00:13,306 adding 'jcvi/annotation/__init__.py' 2021-06-20T16:00:13,307 adding 'jcvi/annotation/__main__.py' 2021-06-20T16:00:13,310 adding 'jcvi/annotation/ahrd.py' 2021-06-20T16:00:13,312 adding 'jcvi/annotation/automaton.py' 2021-06-20T16:00:13,314 adding 'jcvi/annotation/depth.py' 2021-06-20T16:00:13,316 adding 'jcvi/annotation/evm.py' 2021-06-20T16:00:13,318 adding 'jcvi/annotation/maker.py' 2021-06-20T16:00:13,321 adding 'jcvi/annotation/pasa.py' 2021-06-20T16:00:13,323 adding 'jcvi/annotation/qc.py' 2021-06-20T16:00:13,329 adding 'jcvi/annotation/reformat.py' 2021-06-20T16:00:13,332 adding 'jcvi/annotation/stats.py' 2021-06-20T16:00:13,333 adding 'jcvi/annotation/train.py' 2021-06-20T16:00:13,336 adding 'jcvi/apps/__init__.py' 2021-06-20T16:00:13,337 adding 'jcvi/apps/__main__.py' 2021-06-20T16:00:13,339 adding 'jcvi/apps/align.py' 2021-06-20T16:00:13,348 adding 'jcvi/apps/base.py' 2021-06-20T16:00:13,351 adding 'jcvi/apps/biomart.py' 2021-06-20T16:00:13,352 adding 'jcvi/apps/blastplus.py' 2021-06-20T16:00:13,354 adding 'jcvi/apps/bowtie.py' 2021-06-20T16:00:13,356 adding 'jcvi/apps/bwa.py' 2021-06-20T16:00:13,358 adding 'jcvi/apps/cap3.py' 2021-06-20T16:00:13,359 adding 'jcvi/apps/cdhit.py' 2021-06-20T16:00:13,361 adding 'jcvi/apps/emboss.py' 2021-06-20T16:00:13,363 adding 'jcvi/apps/fetch.py' 2021-06-20T16:00:13,366 adding 'jcvi/apps/gbsubmit.py' 2021-06-20T16:00:13,368 adding 'jcvi/apps/gmap.py' 2021-06-20T16:00:13,371 adding 'jcvi/apps/grid.py' 2021-06-20T16:00:13,376 adding 'jcvi/apps/ks.py' 2021-06-20T16:00:13,378 adding 'jcvi/apps/lastz.py' 2021-06-20T16:00:13,379 adding 'jcvi/apps/mask.py' 2021-06-20T16:00:13,384 adding 'jcvi/apps/phylo.py' 2021-06-20T16:00:13,385 adding 'jcvi/apps/r.py' 2021-06-20T16:00:13,387 adding 'jcvi/apps/restriction.py' 2021-06-20T16:00:13,388 adding 'jcvi/apps/script.py' 2021-06-20T16:00:13,390 adding 'jcvi/apps/softlink.py' 2021-06-20T16:00:13,394 adding 'jcvi/apps/uclust.py' 2021-06-20T16:00:13,396 adding 'jcvi/apps/uniprot.py' 2021-06-20T16:00:13,397 adding 'jcvi/apps/vecscreen.py' 2021-06-20T16:00:13,399 adding 'jcvi/assembly/__init__.py' 2021-06-20T16:00:13,400 adding 'jcvi/assembly/__main__.py' 2021-06-20T16:00:13,410 adding 'jcvi/assembly/allmaps.py' 2021-06-20T16:00:13,413 adding 'jcvi/assembly/allpaths.py' 2021-06-20T16:00:13,415 adding 'jcvi/assembly/automaton.py' 2021-06-20T16:00:13,417 adding 'jcvi/assembly/base.py' 2021-06-20T16:00:13,421 adding 'jcvi/assembly/ca.py' 2021-06-20T16:00:13,470 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2021-06-20T16:00:13,473 adding 'jcvi/assembly/chic.pyx' 2021-06-20T16:00:13,474 adding 'jcvi/assembly/coverage.py' 2021-06-20T16:00:13,476 adding 'jcvi/assembly/gaps.py' 2021-06-20T16:00:13,479 adding 'jcvi/assembly/geneticmap.py' 2021-06-20T16:00:13,484 adding 'jcvi/assembly/goldenpath.py' 2021-06-20T16:00:13,492 adding 'jcvi/assembly/hic.py' 2021-06-20T16:00:13,497 adding 'jcvi/assembly/kmer.py' 2021-06-20T16:00:13,499 adding 'jcvi/assembly/opticalmap.py' 2021-06-20T16:00:13,503 adding 'jcvi/assembly/patch.py' 2021-06-20T16:00:13,505 adding 'jcvi/assembly/postprocess.py' 2021-06-20T16:00:13,509 adding 'jcvi/assembly/preprocess.py' 2021-06-20T16:00:13,510 adding 'jcvi/assembly/sim.py' 2021-06-20T16:00:13,512 adding 'jcvi/assembly/soap.py' 2021-06-20T16:00:13,514 adding 'jcvi/assembly/syntenypath.py' 2021-06-20T16:00:13,516 adding 'jcvi/assembly/trinity.py' 2021-06-20T16:00:13,518 adding 'jcvi/compara/__init__.py' 2021-06-20T16:00:13,519 adding 'jcvi/compara/__main__.py' 2021-06-20T16:00:13,521 adding 'jcvi/compara/blastfilter.py' 2021-06-20T16:00:13,524 adding 'jcvi/compara/catalog.py' 2021-06-20T16:00:13,528 adding 'jcvi/compara/fractionation.py' 2021-06-20T16:00:13,530 adding 'jcvi/compara/pad.py' 2021-06-20T16:00:13,531 adding 'jcvi/compara/phylogeny.py' 2021-06-20T16:00:13,533 adding 'jcvi/compara/quota.py' 2021-06-20T16:00:13,535 adding 'jcvi/compara/reconstruct.py' 2021-06-20T16:00:13,537 adding 'jcvi/compara/synfind.py' 2021-06-20T16:00:13,546 adding 'jcvi/compara/synteny.py' 2021-06-20T16:00:13,548 adding 'jcvi/formats/__init__.py' 2021-06-20T16:00:13,549 adding 'jcvi/formats/__main__.py' 2021-06-20T16:00:13,557 adding 'jcvi/formats/agp.py' 2021-06-20T16:00:13,562 adding 'jcvi/formats/base.py' 2021-06-20T16:00:13,571 adding 'jcvi/formats/bed.py' 2021-06-20T16:00:13,577 adding 'jcvi/formats/blast.py' 2021-06-20T16:00:13,681 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2021-06-20T16:00:13,685 adding 'jcvi/formats/cblast.pyx' 2021-06-20T16:00:13,687 adding 'jcvi/formats/cdt.py' 2021-06-20T16:00:13,689 adding 'jcvi/formats/chain.py' 2021-06-20T16:00:13,690 adding 'jcvi/formats/contig.py' 2021-06-20T16:00:13,692 adding 'jcvi/formats/coords.py' 2021-06-20T16:00:13,694 adding 'jcvi/formats/excel.py' 2021-06-20T16:00:13,704 adding 'jcvi/formats/fasta.py' 2021-06-20T16:00:13,708 adding 'jcvi/formats/fastq.py' 2021-06-20T16:00:13,710 adding 'jcvi/formats/genbank.py' 2021-06-20T16:00:13,725 adding 'jcvi/formats/gff.py' 2021-06-20T16:00:13,727 adding 'jcvi/formats/html.py' 2021-06-20T16:00:13,728 adding 'jcvi/formats/maf.py' 2021-06-20T16:00:13,730 adding 'jcvi/formats/obo.py' 2021-06-20T16:00:13,731 adding 'jcvi/formats/paf.py' 2021-06-20T16:00:13,732 adding 'jcvi/formats/pdf.py' 2021-06-20T16:00:13,734 adding 'jcvi/formats/psl.py' 2021-06-20T16:00:13,735 adding 'jcvi/formats/pyblast.py' 2021-06-20T16:00:13,739 adding 'jcvi/formats/sam.py' 2021-06-20T16:00:13,741 adding 'jcvi/formats/sbt.py' 2021-06-20T16:00:13,742 adding 'jcvi/formats/sizes.py' 2021-06-20T16:00:13,746 adding 'jcvi/formats/vcf.py' 2021-06-20T16:00:13,748 adding 'jcvi/graphics/__init__.py' 2021-06-20T16:00:13,749 adding 'jcvi/graphics/__main__.py' 2021-06-20T16:00:13,751 adding 'jcvi/graphics/align.py' 2021-06-20T16:00:13,754 adding 'jcvi/graphics/assembly.py' 2021-06-20T16:00:13,757 adding 'jcvi/graphics/base.py' 2021-06-20T16:00:13,759 adding 'jcvi/graphics/blastplot.py' 2021-06-20T16:00:13,762 adding 'jcvi/graphics/chromosome.py' 2021-06-20T16:00:13,764 adding 'jcvi/graphics/coverage.py' 2021-06-20T16:00:13,767 adding 'jcvi/graphics/dotplot.py' 2021-06-20T16:00:13,770 adding 'jcvi/graphics/glyph.py' 2021-06-20T16:00:13,774 adding 'jcvi/graphics/grabseeds.py' 2021-06-20T16:00:13,775 adding 'jcvi/graphics/graph.py' 2021-06-20T16:00:13,777 adding 'jcvi/graphics/heatmap.py' 2021-06-20T16:00:13,779 adding 'jcvi/graphics/histogram.py' 2021-06-20T16:00:13,781 adding 'jcvi/graphics/karyotype.py' 2021-06-20T16:00:13,785 adding 'jcvi/graphics/landscape.py' 2021-06-20T16:00:13,787 adding 'jcvi/graphics/logo.py' 2021-06-20T16:00:13,789 adding 'jcvi/graphics/mummerplot.py' 2021-06-20T16:00:13,791 adding 'jcvi/graphics/synteny.py' 2021-06-20T16:00:13,793 adding 'jcvi/graphics/table.py' 2021-06-20T16:00:13,796 adding 'jcvi/graphics/tree.py' 2021-06-20T16:00:13,797 adding 'jcvi/graphics/wheel.py' 2021-06-20T16:00:13,799 adding 'jcvi/graphics/whisker.py' 2021-06-20T16:00:13,800 adding 'jcvi/projects/__init__.py' 2021-06-20T16:00:13,801 adding 'jcvi/projects/__main__.py' 2021-06-20T16:00:13,804 adding 'jcvi/projects/age.py' 2021-06-20T16:00:13,805 adding 'jcvi/projects/alfalfa.py' 2021-06-20T16:00:13,808 adding 'jcvi/projects/allmaps.py' 2021-06-20T16:00:13,809 adding 'jcvi/projects/bites.py' 2021-06-20T16:00:13,811 adding 'jcvi/projects/heterosis.py' 2021-06-20T16:00:13,813 adding 'jcvi/projects/ies.py' 2021-06-20T16:00:13,816 adding 'jcvi/projects/misc.py' 2021-06-20T16:00:13,820 adding 'jcvi/projects/napus.py' 2021-06-20T16:00:13,822 adding 'jcvi/projects/pineapple.py' 2021-06-20T16:00:13,824 adding 'jcvi/projects/pistachio.py' 2021-06-20T16:00:13,832 adding 'jcvi/projects/str.py' 2021-06-20T16:00:13,835 adding 'jcvi/projects/sugarcane.py' 2021-06-20T16:00:13,838 adding 'jcvi/projects/synfind.py' 2021-06-20T16:00:13,841 adding 'jcvi/projects/tgbs.py' 2021-06-20T16:00:13,843 adding 'jcvi/projects/vanilla.py' 2021-06-20T16:00:13,845 adding 'jcvi/utils/__init__.py' 2021-06-20T16:00:13,846 adding 'jcvi/utils/__main__.py' 2021-06-20T16:00:13,849 adding 'jcvi/utils/aws.py' 2021-06-20T16:00:13,851 adding 'jcvi/utils/cbook.py' 2021-06-20T16:00:13,852 adding 'jcvi/utils/console.py' 2021-06-20T16:00:13,854 adding 'jcvi/utils/db.py' 2021-06-20T16:00:13,856 adding 'jcvi/utils/ez_setup.py' 2021-06-20T16:00:13,857 adding 'jcvi/utils/grouper.py' 2021-06-20T16:00:13,859 adding 'jcvi/utils/orderedcollections.py' 2021-06-20T16:00:13,861 adding 'jcvi/utils/range.py' 2021-06-20T16:00:13,863 adding 'jcvi/utils/table.py' 2021-06-20T16:00:13,864 adding 'jcvi/utils/taxonomy.py' 2021-06-20T16:00:13,866 adding 'jcvi/utils/webcolors.py' 2021-06-20T16:00:13,869 adding 'jcvi/utils/data/Airswing.ttf' 2021-06-20T16:00:13,886 adding 'jcvi/utils/data/Collegia.ttf' 2021-06-20T16:00:13,890 adding 'jcvi/utils/data/HookedUp.ttf' 2021-06-20T16:00:13,896 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-06-20T16:00:13,900 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-06-20T16:00:13,902 adding 'jcvi/utils/data/__init__.py' 2021-06-20T16:00:13,903 adding 'jcvi/utils/data/adapters.fasta' 2021-06-20T16:00:13,904 adding 'jcvi/utils/data/blosum80.mat' 2021-06-20T16:00:13,906 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-06-20T16:00:13,907 adding 'jcvi/utils/data/colorchecker.txt' 2021-06-20T16:00:13,913 adding 'jcvi/utils/data/hg38.band.txt' 2021-06-20T16:00:13,915 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-06-20T16:00:13,916 adding 'jcvi/utils/data/instance.json' 2021-06-20T16:00:13,918 adding 'jcvi/variation/__init__.py' 2021-06-20T16:00:13,919 adding 'jcvi/variation/__main__.py' 2021-06-20T16:00:13,924 adding 'jcvi/variation/cnv.py' 2021-06-20T16:00:13,926 adding 'jcvi/variation/deconvolute.py' 2021-06-20T16:00:13,928 adding 'jcvi/variation/delly.py' 2021-06-20T16:00:13,930 adding 'jcvi/variation/impute.py' 2021-06-20T16:00:13,931 adding 'jcvi/variation/phase.py' 2021-06-20T16:00:13,933 adding 'jcvi/variation/snp.py' 2021-06-20T16:00:13,939 adding 'jcvi/variation/str.py' 2021-06-20T16:00:13,941 adding 'jcvi/variation/tassel.py' 2021-06-20T16:00:13,943 adding 'jcvi-1.1.13.dist-info/LICENSE' 2021-06-20T16:00:13,945 adding 'jcvi-1.1.13.dist-info/METADATA' 2021-06-20T16:00:13,946 adding 'jcvi-1.1.13.dist-info/WHEEL' 2021-06-20T16:00:13,947 adding 'jcvi-1.1.13.dist-info/top_level.txt' 2021-06-20T16:00:13,949 adding 'jcvi-1.1.13.dist-info/RECORD' 2021-06-20T16:00:13,974 removing build/bdist.linux-armv7l/wheel 2021-06-20T16:00:14,305 Building wheel for jcvi (setup.py): finished with status 'done' 2021-06-20T16:00:14,321 Created wheel for jcvi: filename=jcvi-1.1.13-cp37-cp37m-linux_armv7l.whl size=1159018 sha256=89ea6d1e98fcc1d6892ba389940395ae5a515d7135164ce48e0bab04d485a2dd 2021-06-20T16:00:14,321 Stored in directory: /tmp/pip-ephem-wheel-cache-v8ff517l/wheels/ea/4c/58/d07a80a8dec74c5fa84e59036136b44258f519fb8688d3bb35 2021-06-20T16:00:14,341 Successfully built jcvi 2021-06-20T16:00:14,383 Removed build tracker: '/tmp/pip-req-tracker-9tbtqk5e'