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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-06-20T16:16:28,621 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-06-20T16:16:28,622 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-06-20T16:16:28,622 Found link 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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-06-20T16:16:28,623 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-06-20T16:16:28,623 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-06-20T16:16:28,624 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-06-20T16:16:28,624 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-06-20T16:16:28,624 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-06-20T16:16:28,625 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-06-20T16:16:28,625 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-06-20T16:16:28,625 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-06-20T16:16:28,625 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-06-20T16:16:28,648 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-06-20T16:16:28,663 Collecting jcvi==1.1.14 2021-06-20T16:16:28,665 Created temporary directory: /tmp/pip-unpack-xs84w93m 2021-06-20T16:16:28,708 Downloading jcvi-1.1.14.tar.gz (794 kB) 2021-06-20T16:16:29,447 Added jcvi==1.1.14 from https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 to build tracker '/tmp/pip-req-tracker-luw2f7ef' 2021-06-20T16:16:29,448 Running setup.py (path:/tmp/pip-wheel-ilc8ocg6/jcvi_30300ec6196c4185812f401eb2107659/setup.py) egg_info for package jcvi 2021-06-20T16:16:29,449 Created temporary directory: /tmp/pip-pip-egg-info-56sbzsh0 2021-06-20T16:16:29,449 Running command python setup.py egg_info 2021-06-20T16:16:32,165 running egg_info 2021-06-20T16:16:32,167 creating /tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info 2021-06-20T16:16:32,168 writing /tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info/PKG-INFO 2021-06-20T16:16:32,172 writing dependency_links to /tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info/dependency_links.txt 2021-06-20T16:16:32,174 writing requirements to /tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info/requires.txt 2021-06-20T16:16:32,175 writing top-level names to /tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info/top_level.txt 2021-06-20T16:16:32,177 writing manifest file '/tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info/SOURCES.txt' 2021-06-20T16:16:32,221 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-06-20T16:16:32,224 reading manifest file '/tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info/SOURCES.txt' 2021-06-20T16:16:32,226 reading manifest template 'MANIFEST.in' 2021-06-20T16:16:32,238 writing manifest file '/tmp/pip-pip-egg-info-56sbzsh0/jcvi.egg-info/SOURCES.txt' 2021-06-20T16:16:32,239 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:463: UserWarning: Normalizing 'v1.1.14' to '1.1.14' 2021-06-20T16:16:32,240 warnings.warn(tmpl.format(**locals())) 2021-06-20T16:16:32,338 Source in /tmp/pip-wheel-ilc8ocg6/jcvi_30300ec6196c4185812f401eb2107659 has version 1.1.14, which satisfies requirement jcvi==1.1.14 from https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 2021-06-20T16:16:32,339 Removed jcvi==1.1.14 from https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 from build tracker '/tmp/pip-req-tracker-luw2f7ef' 2021-06-20T16:16:32,345 Created temporary directory: /tmp/pip-unpack-v5soef5i 2021-06-20T16:16:32,345 Building wheels for collected packages: jcvi 2021-06-20T16:16:32,350 Created temporary directory: /tmp/pip-wheel-se7kxw36 2021-06-20T16:16:32,350 Building wheel for jcvi (setup.py): started 2021-06-20T16:16:32,351 Destination directory: /tmp/pip-wheel-se7kxw36 2021-06-20T16:16:32,351 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ilc8ocg6/jcvi_30300ec6196c4185812f401eb2107659/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ilc8ocg6/jcvi_30300ec6196c4185812f401eb2107659/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-se7kxw36 2021-06-20T16:16:33,857 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:463: UserWarning: Normalizing 'v1.1.14' to '1.1.14' 2021-06-20T16:16:33,858 warnings.warn(tmpl.format(**locals())) 2021-06-20T16:16:33,935 running bdist_wheel 2021-06-20T16:16:33,939 running build 2021-06-20T16:16:33,940 running build_py 2021-06-20T16:16:33,945 creating build 2021-06-20T16:16:33,945 creating build/lib.linux-armv7l-3.7 2021-06-20T16:16:33,946 creating build/lib.linux-armv7l-3.7/jcvi 2021-06-20T16:16:33,947 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2021-06-20T16:16:33,949 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2021-06-20T16:16:33,952 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,953 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,955 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,957 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,959 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,962 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,965 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,967 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,969 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,972 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,974 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,977 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,980 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-06-20T16:16:33,984 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:33,985 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:33,990 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:33,992 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:33,995 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:33,998 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,001 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,002 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,005 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,008 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,010 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,013 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,017 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,021 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,023 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,026 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,029 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,032 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,035 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,037 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,040 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,043 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,047 creating build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,047 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,050 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,052 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,054 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,057 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,059 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,061 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,063 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,065 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,067 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,070 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,073 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,076 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,078 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,080 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,084 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,087 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,089 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,093 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,095 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,099 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,102 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,105 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,111 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,115 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,119 creating build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,120 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,121 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,123 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,125 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,127 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,130 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,132 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,134 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,138 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,141 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-06-20T16:16:34,145 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,147 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,150 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,152 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,155 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,157 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,159 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,161 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,164 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,166 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,169 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,172 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,174 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-06-20T16:16:34,178 creating build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,179 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,182 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,187 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,190 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,192 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,193 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,195 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,198 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,201 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,203 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,205 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,207 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,209 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,212 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,214 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,216 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,218 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,221 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,223 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,226 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,230 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,232 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,234 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,238 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,240 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-06-20T16:16:34,243 creating build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,245 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,246 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,248 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,251 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,253 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,255 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,258 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,260 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,261 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,264 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,266 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,269 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,271 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-06-20T16:16:34,274 creating build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,275 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,278 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,280 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,283 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,285 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,289 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,291 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,293 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,295 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,298 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,300 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-06-20T16:16:34,303 creating build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,304 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,307 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,309 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,311 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,313 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,316 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,318 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,320 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,322 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,325 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,328 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,332 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,334 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,336 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,339 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,342 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,343 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-06-20T16:16:34,347 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,348 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,351 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,353 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,356 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,357 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,359 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,362 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,364 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,366 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,369 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,372 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,374 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,377 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,380 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,382 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,384 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,386 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,388 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,391 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,393 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,395 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,397 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,399 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-06-20T16:16:34,402 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,403 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,405 running egg_info 2021-06-20T16:16:34,414 writing jcvi.egg-info/PKG-INFO 2021-06-20T16:16:34,417 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-06-20T16:16:34,418 writing requirements to jcvi.egg-info/requires.txt 2021-06-20T16:16:34,420 writing top-level names to jcvi.egg-info/top_level.txt 2021-06-20T16:16:34,440 adding license file 'LICENSE' (matched pattern 'LICEN[CS]E*') 2021-06-20T16:16:34,443 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-06-20T16:16:34,449 reading manifest template 'MANIFEST.in' 2021-06-20T16:16:34,463 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-06-20T16:16:34,469 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:34,471 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:34,474 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,476 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,481 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,483 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,486 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,489 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,491 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,493 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,496 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,498 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,502 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,504 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-06-20T16:16:34,522 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2021-06-20T16:16:34,523 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.1.14' 2021-06-20T16:16:34,523 running build_ext 2021-06-20T16:16:34,590 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-06-20T16:16:35,425 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ilc8ocg6/jcvi_30300ec6196c4185812f401eb2107659/jcvi/assembly/chic.pyx 2021-06-20T16:16:35,425 tree = Parsing.p_module(s, pxd, full_module_name) 2021-06-20T16:16:37,166 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-06-20T16:16:37,172 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ilc8ocg6/jcvi_30300ec6196c4185812f401eb2107659/jcvi/formats/cblast.pyx 2021-06-20T16:16:37,172 tree = Parsing.p_module(s, pxd, full_module_name) 2021-06-20T16:16:37,770 building 'jcvi.assembly.chic' extension 2021-06-20T16:16:37,771 creating build/temp.linux-armv7l-3.7 2021-06-20T16:16:37,771 creating build/temp.linux-armv7l-3.7/jcvi 2021-06-20T16:16:37,772 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2021-06-20T16:16:37,772 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2021-06-20T16:16:38,220 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1944, 2021-06-20T16:16:38,220 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-06-20T16:16:38,221 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-06-20T16:16:38,221 from jcvi/assembly/chic.c:612: 2021-06-20T16:16:38,221 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-06-20T16:16:38,221 #warning "Using deprecated NumPy API, disable it with " \ 2021-06-20T16:16:38,222 ^~~~~~~ 2021-06-20T16:16:41,941 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2021-06-20T16:16:42,086 building 'jcvi.formats.cblast' extension 2021-06-20T16:16:42,087 creating build/temp.linux-armv7l-3.7/jcvi/formats 2021-06-20T16:16:42,087 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2021-06-20T16:16:49,039 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2021-06-20T16:16:49,204 installing to build/bdist.linux-armv7l/wheel 2021-06-20T16:16:49,205 running install 2021-06-20T16:16:49,206 running install_lib 2021-06-20T16:16:49,210 creating build/bdist.linux-armv7l 2021-06-20T16:16:49,210 creating build/bdist.linux-armv7l/wheel 2021-06-20T16:16:49,212 creating build/bdist.linux-armv7l/wheel/jcvi 2021-06-20T16:16:49,213 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-06-20T16:16:49,216 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,217 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,219 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,221 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,223 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,226 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,229 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,231 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,234 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,236 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,239 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,242 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,245 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-06-20T16:16:49,248 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,249 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,254 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,257 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,260 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,263 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,265 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,267 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,270 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,273 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,275 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,278 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,280 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,284 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,288 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,291 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,294 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,305 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,309 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,313 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,317 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,320 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,323 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,326 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-06-20T16:16:49,330 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,332 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,335 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,338 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,340 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,345 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,364 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,366 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,369 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,371 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,374 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,377 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,380 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,384 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,387 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,389 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,392 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,397 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,400 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,404 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,407 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,411 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,414 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,419 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,422 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,425 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,431 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,437 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-06-20T16:16:49,441 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,442 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,444 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,446 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,448 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,451 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,454 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,457 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,459 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,463 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,467 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-06-20T16:16:49,470 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,471 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,474 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,478 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,481 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,483 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,485 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,488 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,492 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,494 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,497 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,501 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,505 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-06-20T16:16:49,509 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,510 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,514 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,521 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,526 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,528 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,530 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,533 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,536 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,540 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,543 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,546 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,549 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,552 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,555 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,558 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,560 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,563 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,567 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,570 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,573 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,577 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,580 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,583 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,587 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,590 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-06-20T16:16:49,593 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,595 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,597 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,599 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,602 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,605 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,608 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,612 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,613 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,616 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,618 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,621 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,624 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,628 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,634 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,638 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,641 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,643 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,647 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,651 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,653 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-06-20T16:16:49,657 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,659 copying build/lib.linux-armv7l-3.7/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,662 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,665 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,668 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,671 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,675 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-06-20T16:16:49,678 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-06-20T16:16:49,681 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,682 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,686 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,688 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,691 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,694 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,699 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,702 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,705 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,709 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,712 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,715 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-06-20T16:16:49,719 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,721 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,725 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,727 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,730 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,733 copying build/lib.linux-armv7l-3.7/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,736 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,739 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,742 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,745 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,749 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,752 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,757 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,760 copying build/lib.linux-armv7l-3.7/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,763 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,767 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,771 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,773 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-06-20T16:16:49,778 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,779 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,783 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,786 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,789 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,792 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,795 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,798 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,801 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,804 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,808 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,811 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,815 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,818 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,822 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,825 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,828 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,831 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,833 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,837 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,840 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,843 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,845 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,848 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-06-20T16:16:49,851 running install_egg_info 2021-06-20T16:16:49,871 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.14-py3.7.egg-info 2021-06-20T16:16:49,888 running install_scripts 2021-06-20T16:16:49,958 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-06-20T16:16:49,963 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.14.dist-info/WHEEL 2021-06-20T16:16:49,967 creating '/tmp/pip-wheel-se7kxw36/jcvi-1.1.14-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-06-20T16:16:49,970 adding 'jcvi/__init__.py' 2021-06-20T16:16:49,972 adding 'jcvi/_version.py' 2021-06-20T16:16:49,974 adding 'jcvi/algorithms/__init__.py' 2021-06-20T16:16:49,976 adding 'jcvi/algorithms/__main__.py' 2021-06-20T16:16:49,978 adding 'jcvi/algorithms/ec.py' 2021-06-20T16:16:49,980 adding 'jcvi/algorithms/formula.py' 2021-06-20T16:16:49,984 adding 'jcvi/algorithms/graph.py' 2021-06-20T16:16:49,986 adding 'jcvi/algorithms/lis.py' 2021-06-20T16:16:49,990 adding 'jcvi/algorithms/lpsolve.py' 2021-06-20T16:16:49,992 adding 'jcvi/algorithms/matrix.py' 2021-06-20T16:16:49,994 adding 'jcvi/algorithms/maxsum.py' 2021-06-20T16:16:49,996 adding 'jcvi/algorithms/ml.py' 2021-06-20T16:16:49,998 adding 'jcvi/algorithms/supermap.py' 2021-06-20T16:16:50,001 adding 'jcvi/algorithms/tsp.py' 2021-06-20T16:16:50,003 adding 'jcvi/annotation/__init__.py' 2021-06-20T16:16:50,005 adding 'jcvi/annotation/__main__.py' 2021-06-20T16:16:50,008 adding 'jcvi/annotation/ahrd.py' 2021-06-20T16:16:50,010 adding 'jcvi/annotation/automaton.py' 2021-06-20T16:16:50,012 adding 'jcvi/annotation/depth.py' 2021-06-20T16:16:50,014 adding 'jcvi/annotation/evm.py' 2021-06-20T16:16:50,017 adding 'jcvi/annotation/maker.py' 2021-06-20T16:16:50,020 adding 'jcvi/annotation/pasa.py' 2021-06-20T16:16:50,023 adding 'jcvi/annotation/qc.py' 2021-06-20T16:16:50,029 adding 'jcvi/annotation/reformat.py' 2021-06-20T16:16:50,032 adding 'jcvi/annotation/stats.py' 2021-06-20T16:16:50,034 adding 'jcvi/annotation/train.py' 2021-06-20T16:16:50,037 adding 'jcvi/apps/__init__.py' 2021-06-20T16:16:50,039 adding 'jcvi/apps/__main__.py' 2021-06-20T16:16:50,041 adding 'jcvi/apps/align.py' 2021-06-20T16:16:50,051 adding 'jcvi/apps/base.py' 2021-06-20T16:16:50,054 adding 'jcvi/apps/biomart.py' 2021-06-20T16:16:50,056 adding 'jcvi/apps/blastplus.py' 2021-06-20T16:16:50,057 adding 'jcvi/apps/bowtie.py' 2021-06-20T16:16:50,059 adding 'jcvi/apps/bwa.py' 2021-06-20T16:16:50,062 adding 'jcvi/apps/cdhit.py' 2021-06-20T16:16:50,063 adding 'jcvi/apps/emboss.py' 2021-06-20T16:16:50,067 adding 'jcvi/apps/fetch.py' 2021-06-20T16:16:50,070 adding 'jcvi/apps/gbsubmit.py' 2021-06-20T16:16:50,072 adding 'jcvi/apps/gmap.py' 2021-06-20T16:16:50,075 adding 'jcvi/apps/grid.py' 2021-06-20T16:16:50,081 adding 'jcvi/apps/ks.py' 2021-06-20T16:16:50,083 adding 'jcvi/apps/lastz.py' 2021-06-20T16:16:50,085 adding 'jcvi/apps/mask.py' 2021-06-20T16:16:50,090 adding 'jcvi/apps/phylo.py' 2021-06-20T16:16:50,092 adding 'jcvi/apps/r.py' 2021-06-20T16:16:50,094 adding 'jcvi/apps/restriction.py' 2021-06-20T16:16:50,096 adding 'jcvi/apps/script.py' 2021-06-20T16:16:50,097 adding 'jcvi/apps/softlink.py' 2021-06-20T16:16:50,102 adding 'jcvi/apps/uclust.py' 2021-06-20T16:16:50,105 adding 'jcvi/apps/uniprot.py' 2021-06-20T16:16:50,106 adding 'jcvi/apps/vecscreen.py' 2021-06-20T16:16:50,109 adding 'jcvi/assembly/__init__.py' 2021-06-20T16:16:50,110 adding 'jcvi/assembly/__main__.py' 2021-06-20T16:16:50,120 adding 'jcvi/assembly/allmaps.py' 2021-06-20T16:16:50,123 adding 'jcvi/assembly/allpaths.py' 2021-06-20T16:16:50,126 adding 'jcvi/assembly/automaton.py' 2021-06-20T16:16:50,128 adding 'jcvi/assembly/base.py' 2021-06-20T16:16:50,133 adding 'jcvi/assembly/ca.py' 2021-06-20T16:16:50,184 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2021-06-20T16:16:50,188 adding 'jcvi/assembly/chic.pyx' 2021-06-20T16:16:50,190 adding 'jcvi/assembly/coverage.py' 2021-06-20T16:16:50,192 adding 'jcvi/assembly/gaps.py' 2021-06-20T16:16:50,195 adding 'jcvi/assembly/geneticmap.py' 2021-06-20T16:16:50,200 adding 'jcvi/assembly/goldenpath.py' 2021-06-20T16:16:50,209 adding 'jcvi/assembly/hic.py' 2021-06-20T16:16:50,215 adding 'jcvi/assembly/kmer.py' 2021-06-20T16:16:50,218 adding 'jcvi/assembly/opticalmap.py' 2021-06-20T16:16:50,222 adding 'jcvi/assembly/patch.py' 2021-06-20T16:16:50,225 adding 'jcvi/assembly/postprocess.py' 2021-06-20T16:16:50,229 adding 'jcvi/assembly/preprocess.py' 2021-06-20T16:16:50,231 adding 'jcvi/assembly/sim.py' 2021-06-20T16:16:50,233 adding 'jcvi/assembly/soap.py' 2021-06-20T16:16:50,236 adding 'jcvi/assembly/syntenypath.py' 2021-06-20T16:16:50,238 adding 'jcvi/assembly/trinity.py' 2021-06-20T16:16:50,240 adding 'jcvi/compara/__init__.py' 2021-06-20T16:16:50,241 adding 'jcvi/compara/__main__.py' 2021-06-20T16:16:50,244 adding 'jcvi/compara/blastfilter.py' 2021-06-20T16:16:50,248 adding 'jcvi/compara/catalog.py' 2021-06-20T16:16:50,252 adding 'jcvi/compara/fractionation.py' 2021-06-20T16:16:50,254 adding 'jcvi/compara/pad.py' 2021-06-20T16:16:50,256 adding 'jcvi/compara/phylogeny.py' 2021-06-20T16:16:50,258 adding 'jcvi/compara/quota.py' 2021-06-20T16:16:50,261 adding 'jcvi/compara/reconstruct.py' 2021-06-20T16:16:50,263 adding 'jcvi/compara/synfind.py' 2021-06-20T16:16:50,272 adding 'jcvi/compara/synteny.py' 2021-06-20T16:16:50,275 adding 'jcvi/formats/__init__.py' 2021-06-20T16:16:50,277 adding 'jcvi/formats/__main__.py' 2021-06-20T16:16:50,285 adding 'jcvi/formats/agp.py' 2021-06-20T16:16:50,290 adding 'jcvi/formats/base.py' 2021-06-20T16:16:50,301 adding 'jcvi/formats/bed.py' 2021-06-20T16:16:50,307 adding 'jcvi/formats/blast.py' 2021-06-20T16:16:50,412 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2021-06-20T16:16:50,418 adding 'jcvi/formats/cblast.pyx' 2021-06-20T16:16:50,420 adding 'jcvi/formats/cdt.py' 2021-06-20T16:16:50,422 adding 'jcvi/formats/chain.py' 2021-06-20T16:16:50,423 adding 'jcvi/formats/contig.py' 2021-06-20T16:16:50,426 adding 'jcvi/formats/coords.py' 2021-06-20T16:16:50,428 adding 'jcvi/formats/excel.py' 2021-06-20T16:16:50,439 adding 'jcvi/formats/fasta.py' 2021-06-20T16:16:50,444 adding 'jcvi/formats/fastq.py' 2021-06-20T16:16:50,447 adding 'jcvi/formats/genbank.py' 2021-06-20T16:16:50,462 adding 'jcvi/formats/gff.py' 2021-06-20T16:16:50,465 adding 'jcvi/formats/html.py' 2021-06-20T16:16:50,467 adding 'jcvi/formats/maf.py' 2021-06-20T16:16:50,468 adding 'jcvi/formats/obo.py' 2021-06-20T16:16:50,470 adding 'jcvi/formats/paf.py' 2021-06-20T16:16:50,471 adding 'jcvi/formats/pdf.py' 2021-06-20T16:16:50,474 adding 'jcvi/formats/psl.py' 2021-06-20T16:16:50,475 adding 'jcvi/formats/pyblast.py' 2021-06-20T16:16:50,480 adding 'jcvi/formats/sam.py' 2021-06-20T16:16:50,482 adding 'jcvi/formats/sizes.py' 2021-06-20T16:16:50,486 adding 'jcvi/formats/vcf.py' 2021-06-20T16:16:50,490 adding 'jcvi/graphics/__init__.py' 2021-06-20T16:16:50,491 adding 'jcvi/graphics/__main__.py' 2021-06-20T16:16:50,494 adding 'jcvi/graphics/align.py' 2021-06-20T16:16:50,497 adding 'jcvi/graphics/assembly.py' 2021-06-20T16:16:50,501 adding 'jcvi/graphics/base.py' 2021-06-20T16:16:50,504 adding 'jcvi/graphics/blastplot.py' 2021-06-20T16:16:50,507 adding 'jcvi/graphics/chromosome.py' 2021-06-20T16:16:50,509 adding 'jcvi/graphics/coverage.py' 2021-06-20T16:16:50,512 adding 'jcvi/graphics/dotplot.py' 2021-06-20T16:16:50,516 adding 'jcvi/graphics/glyph.py' 2021-06-20T16:16:50,520 adding 'jcvi/graphics/grabseeds.py' 2021-06-20T16:16:50,522 adding 'jcvi/graphics/graph.py' 2021-06-20T16:16:50,524 adding 'jcvi/graphics/heatmap.py' 2021-06-20T16:16:50,527 adding 'jcvi/graphics/histogram.py' 2021-06-20T16:16:50,530 adding 'jcvi/graphics/karyotype.py' 2021-06-20T16:16:50,536 adding 'jcvi/graphics/landscape.py' 2021-06-20T16:16:50,538 adding 'jcvi/graphics/logo.py' 2021-06-20T16:16:50,539 adding 'jcvi/graphics/mummerplot.py' 2021-06-20T16:16:50,542 adding 'jcvi/graphics/synteny.py' 2021-06-20T16:16:50,544 adding 'jcvi/graphics/table.py' 2021-06-20T16:16:50,547 adding 'jcvi/graphics/tree.py' 2021-06-20T16:16:50,549 adding 'jcvi/graphics/wheel.py' 2021-06-20T16:16:50,550 adding 'jcvi/graphics/whisker.py' 2021-06-20T16:16:50,552 adding 'jcvi/projects/__init__.py' 2021-06-20T16:16:50,553 adding 'jcvi/projects/__main__.py' 2021-06-20T16:16:50,556 adding 'jcvi/projects/age.py' 2021-06-20T16:16:50,558 adding 'jcvi/projects/alfalfa.py' 2021-06-20T16:16:50,560 adding 'jcvi/projects/allmaps.py' 2021-06-20T16:16:50,562 adding 'jcvi/projects/bites.py' 2021-06-20T16:16:50,564 adding 'jcvi/projects/heterosis.py' 2021-06-20T16:16:50,566 adding 'jcvi/projects/ies.py' 2021-06-20T16:16:50,569 adding 'jcvi/projects/misc.py' 2021-06-20T16:16:50,573 adding 'jcvi/projects/napus.py' 2021-06-20T16:16:50,576 adding 'jcvi/projects/pineapple.py' 2021-06-20T16:16:50,577 adding 'jcvi/projects/pistachio.py' 2021-06-20T16:16:50,586 adding 'jcvi/projects/str.py' 2021-06-20T16:16:50,589 adding 'jcvi/projects/sugarcane.py' 2021-06-20T16:16:50,592 adding 'jcvi/projects/synfind.py' 2021-06-20T16:16:50,595 adding 'jcvi/projects/tgbs.py' 2021-06-20T16:16:50,597 adding 'jcvi/projects/vanilla.py' 2021-06-20T16:16:50,599 adding 'jcvi/utils/__init__.py' 2021-06-20T16:16:50,601 adding 'jcvi/utils/__main__.py' 2021-06-20T16:16:50,604 adding 'jcvi/utils/aws.py' 2021-06-20T16:16:50,606 adding 'jcvi/utils/cbook.py' 2021-06-20T16:16:50,608 adding 'jcvi/utils/console.py' 2021-06-20T16:16:50,610 adding 'jcvi/utils/db.py' 2021-06-20T16:16:50,611 adding 'jcvi/utils/ez_setup.py' 2021-06-20T16:16:50,612 adding 'jcvi/utils/grouper.py' 2021-06-20T16:16:50,615 adding 'jcvi/utils/orderedcollections.py' 2021-06-20T16:16:50,617 adding 'jcvi/utils/range.py' 2021-06-20T16:16:50,619 adding 'jcvi/utils/table.py' 2021-06-20T16:16:50,620 adding 'jcvi/utils/taxonomy.py' 2021-06-20T16:16:50,622 adding 'jcvi/utils/webcolors.py' 2021-06-20T16:16:50,626 adding 'jcvi/utils/data/Airswing.ttf' 2021-06-20T16:16:50,644 adding 'jcvi/utils/data/Collegia.ttf' 2021-06-20T16:16:50,648 adding 'jcvi/utils/data/HookedUp.ttf' 2021-06-20T16:16:50,654 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-06-20T16:16:50,658 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-06-20T16:16:50,660 adding 'jcvi/utils/data/__init__.py' 2021-06-20T16:16:50,661 adding 'jcvi/utils/data/adapters.fasta' 2021-06-20T16:16:50,663 adding 'jcvi/utils/data/blosum80.mat' 2021-06-20T16:16:50,665 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-06-20T16:16:50,666 adding 'jcvi/utils/data/colorchecker.txt' 2021-06-20T16:16:50,672 adding 'jcvi/utils/data/hg38.band.txt' 2021-06-20T16:16:50,675 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-06-20T16:16:50,676 adding 'jcvi/utils/data/instance.json' 2021-06-20T16:16:50,678 adding 'jcvi/variation/__init__.py' 2021-06-20T16:16:50,679 adding 'jcvi/variation/__main__.py' 2021-06-20T16:16:50,684 adding 'jcvi/variation/cnv.py' 2021-06-20T16:16:50,686 adding 'jcvi/variation/deconvolute.py' 2021-06-20T16:16:50,688 adding 'jcvi/variation/delly.py' 2021-06-20T16:16:50,690 adding 'jcvi/variation/impute.py' 2021-06-20T16:16:50,692 adding 'jcvi/variation/phase.py' 2021-06-20T16:16:50,694 adding 'jcvi/variation/snp.py' 2021-06-20T16:16:50,700 adding 'jcvi/variation/str.py' 2021-06-20T16:16:50,702 adding 'jcvi/variation/tassel.py' 2021-06-20T16:16:50,704 adding 'jcvi-1.1.14.dist-info/LICENSE' 2021-06-20T16:16:50,706 adding 'jcvi-1.1.14.dist-info/METADATA' 2021-06-20T16:16:50,707 adding 'jcvi-1.1.14.dist-info/WHEEL' 2021-06-20T16:16:50,708 adding 'jcvi-1.1.14.dist-info/top_level.txt' 2021-06-20T16:16:50,710 adding 'jcvi-1.1.14.dist-info/RECORD' 2021-06-20T16:16:50,731 removing build/bdist.linux-armv7l/wheel 2021-06-20T16:16:51,063 Building wheel for jcvi (setup.py): finished with status 'done' 2021-06-20T16:16:51,078 Created wheel for jcvi: filename=jcvi-1.1.14-cp37-cp37m-linux_armv7l.whl size=1152870 sha256=7e4319ee9126d14cd28186cee1fe02c976733e2416f6a0b0bc094101f1c36eb7 2021-06-20T16:16:51,078 Stored in directory: /tmp/pip-ephem-wheel-cache-an3bt36j/wheels/52/17/4e/b3483563030b1f75ba8e005fd38c97dbe19df09fdb8c831099 2021-06-20T16:16:51,095 Successfully built jcvi 2021-06-20T16:16:51,135 Removed build tracker: '/tmp/pip-req-tracker-luw2f7ef'