2021-06-28T04:47:37,248 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-06-28T04:47:37,981 Created temporary directory: /tmp/pip-ephem-wheel-cache-wttpb4kq
2021-06-28T04:47:37,986 Created temporary directory: /tmp/pip-req-tracker-z2oibowz
2021-06-28T04:47:37,987 Initialized build tracking at /tmp/pip-req-tracker-z2oibowz
2021-06-28T04:47:37,987 Created build tracker: /tmp/pip-req-tracker-z2oibowz
2021-06-28T04:47:37,988 Entered build tracker: /tmp/pip-req-tracker-z2oibowz
2021-06-28T04:47:37,989 Created temporary directory: /tmp/pip-wheel-mclzw7hh
2021-06-28T04:47:38,063 1 location(s) to search for versions of mgatk:
2021-06-28T04:47:38,063 * https://pypi.org/simple/mgatk/
2021-06-28T04:47:38,064 Fetching project page and analyzing links: https://pypi.org/simple/mgatk/
2021-06-28T04:47:38,066 Getting page https://pypi.org/simple/mgatk/
2021-06-28T04:47:38,071 Found index url https://pypi.org/simple
2021-06-28T04:47:38,405   Found link https://files.pythonhosted.org/packages/8f/0c/47da433403828d2e53de436d7689af32d8ee5130dc1c748ce0175d0f2eb1/mgatk-0.0.1.tar.gz#sha256=f0a66229c6057d0cc66db65b33141cd22a3ebc0a4ede501e4887014b5a56643b (from https://pypi.org/simple/mgatk/), version: 0.0.1
2021-06-28T04:47:38,406   Found link https://files.pythonhosted.org/packages/f7/7f/f09842055b19e670fbc309415123b423d30cc0fd1a8c430785bd1754827f/mgatk-0.1.0.tar.gz#sha256=bcfea43a3fb2d22b7c5cbecf59fd3989ef03250f87378b33e889b4054e275166 (from https://pypi.org/simple/mgatk/), version: 0.1.0
2021-06-28T04:47:38,407   Found link https://files.pythonhosted.org/packages/b7/8e/ac9ab509199f852d88097608e3fb60fc85232c87a36a062a041043ea869d/mgatk-0.2.5.tar.gz#sha256=b16329f84786ef87490379db121816b103fe5339ed90fb395e0a9c4ef5028d6e (from https://pypi.org/simple/mgatk/), version: 0.2.5
2021-06-28T04:47:38,408   Found link https://files.pythonhosted.org/packages/74/28/da183d0b56f401dec7f3bded24c50a02396e56c4f995fd50a3cf21c4381d/mgatk-0.5.0.tar.gz#sha256=61ee4d3c18cf696ecfbea6ab5dd9bfebf9791c368a04cfc2d1afcdfe16a6d3ca (from https://pypi.org/simple/mgatk/), version: 0.5.0
2021-06-28T04:47:38,409   Found link https://files.pythonhosted.org/packages/96/e8/e35c039eac8d418ca9213b1db69c4176b59783ca43638a75e824b475197d/mgatk-0.5.1.tar.gz#sha256=518ef6a1d25d9f889a306514eaf1ade02146fce28a43866a60dc6f1dad81b54c (from https://pypi.org/simple/mgatk/), version: 0.5.1
2021-06-28T04:47:38,410   Found link https://files.pythonhosted.org/packages/b6/16/d11afe05a803f23995d04af8fd832473fa1d21f73f242340f6086eb97183/mgatk-0.5.3.tar.gz#sha256=d9b78751af0fe8c31d22508a24ef061d7478c8a2c6283eded971f8802f060f79 (from https://pypi.org/simple/mgatk/), version: 0.5.3
2021-06-28T04:47:38,411   Found link https://files.pythonhosted.org/packages/be/5f/896adc0419fad47b3434866dd68deb7b93a1328916be0eb1f0827393633e/mgatk-0.5.5.tar.gz#sha256=bcc0470b4d01e5cd5d5e67f87720101fc4db889a0c5a4ef35c7d7224989d60a7 (from https://pypi.org/simple/mgatk/), version: 0.5.5
2021-06-28T04:47:38,412   Found link https://files.pythonhosted.org/packages/d0/3d/4a67edbf2648ab25ee6b2361e454638ecd5de6753a0c5f3de21975a7c5bd/mgatk-0.5.6.tar.gz#sha256=9a5f51c87b26221644ab12b675f4334efc1d3339b32065cd5c5ac2b512350ee6 (from https://pypi.org/simple/mgatk/), version: 0.5.6
2021-06-28T04:47:38,413   Found link https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df (from https://pypi.org/simple/mgatk/), version: 0.5.7
2021-06-28T04:47:38,414   Found link https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67 (from https://pypi.org/simple/mgatk/), version: 0.5.8
2021-06-28T04:47:38,415   Found link https://files.pythonhosted.org/packages/f1/06/47716f2b5fec77a4a48fb5f3722ec27da0ce98d2219cb2eceb113fc72d8b/mgatk-0.5.9.tar.gz#sha256=6c3ba9b8c2b0edaea34e31f4a0b1a88c282a81e5d3823415f1a7c478395233f4 (from https://pypi.org/simple/mgatk/), version: 0.5.9
2021-06-28T04:47:38,416   Found link https://files.pythonhosted.org/packages/e6/73/33c2bdc77eead0a8d9b81a38adb54b75f804b189adabad25795edb5bdc60/mgatk-0.6.0.tar.gz#sha256=95ac75a5f3994c85789f4bf561f21f19f6f2229534a2a331fdddfcca4b4c5220 (from https://pypi.org/simple/mgatk/), version: 0.6.0
2021-06-28T04:47:38,417   Found link https://files.pythonhosted.org/packages/20/57/9e2171535e864b06353f2ef16f9bcbc8308f92406c9909e65fe2a7aa39a6/mgatk-0.6.1.tar.gz#sha256=02621183dccb57d508a69d80182506bfd1716669a8808da49f02c78916d7d85a (from https://pypi.org/simple/mgatk/), version: 0.6.1
2021-06-28T04:47:38,417   Found link https://files.pythonhosted.org/packages/0c/20/8b326bdf214a7a05c0cf4f9469bb42ba3005cb3b749af130ff8d7a3dbef2/mgatk-0.6.2.tar.gz#sha256=1fff8a100fcf15f9fee42aadc352d4a12a9772269f08caceccfdfc395664f9fe (from https://pypi.org/simple/mgatk/), version: 0.6.2
2021-06-28T04:47:38,453 Given no hashes to check 1 links for project 'mgatk': discarding no candidates
2021-06-28T04:47:38,487 Collecting mgatk==0.6.2
2021-06-28T04:47:38,491   Created temporary directory: /tmp/pip-unpack-16zrzsjn
2021-06-28T04:47:41,254   Downloading mgatk-0.6.2.tar.gz (14.3 MB)
2021-06-28T04:47:46,650   Added mgatk==0.6.2 from https://files.pythonhosted.org/packages/0c/20/8b326bdf214a7a05c0cf4f9469bb42ba3005cb3b749af130ff8d7a3dbef2/mgatk-0.6.2.tar.gz#sha256=1fff8a100fcf15f9fee42aadc352d4a12a9772269f08caceccfdfc395664f9fe to build tracker '/tmp/pip-req-tracker-z2oibowz'
2021-06-28T04:47:46,654     Running setup.py (path:/tmp/pip-wheel-mclzw7hh/mgatk_2db6ca0a110b41b59a983f1a35814c20/setup.py) egg_info for package mgatk
2021-06-28T04:47:46,656     Created temporary directory: /tmp/pip-pip-egg-info-4vvhodb1
2021-06-28T04:47:46,657     Running command python setup.py egg_info
2021-06-28T04:47:49,078     running egg_info
2021-06-28T04:47:49,083     creating /tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info
2021-06-28T04:47:49,087     writing dependency_links to /tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/dependency_links.txt
2021-06-28T04:47:49,090     writing top-level names to /tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/top_level.txt
2021-06-28T04:47:49,092     writing /tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/PKG-INFO
2021-06-28T04:47:49,097     writing requirements to /tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/requires.txt
2021-06-28T04:47:49,100     writing entry points to /tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/entry_points.txt
2021-06-28T04:47:49,104     writing manifest file '/tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/SOURCES.txt'
2021-06-28T04:47:49,468     reading manifest file '/tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/SOURCES.txt'
2021-06-28T04:47:49,471     reading manifest template 'MANIFEST.in'
2021-06-28T04:47:49,474     no previously-included directories found matching 'mgatk.egg-info/'
2021-06-28T04:47:49,475     no previously-included directories found matching 'tests/'
2021-06-28T04:47:49,476     no previously-included directories found matching '*.DS_Store'
2021-06-28T04:47:49,583     writing manifest file '/tmp/pip-pip-egg-info-4vvhodb1/mgatk.egg-info/SOURCES.txt'
2021-06-28T04:47:49,718   Source in /tmp/pip-wheel-mclzw7hh/mgatk_2db6ca0a110b41b59a983f1a35814c20 has version 0.6.2, which satisfies requirement mgatk==0.6.2 from https://files.pythonhosted.org/packages/0c/20/8b326bdf214a7a05c0cf4f9469bb42ba3005cb3b749af130ff8d7a3dbef2/mgatk-0.6.2.tar.gz#sha256=1fff8a100fcf15f9fee42aadc352d4a12a9772269f08caceccfdfc395664f9fe
2021-06-28T04:47:49,720   Removed mgatk==0.6.2 from https://files.pythonhosted.org/packages/0c/20/8b326bdf214a7a05c0cf4f9469bb42ba3005cb3b749af130ff8d7a3dbef2/mgatk-0.6.2.tar.gz#sha256=1fff8a100fcf15f9fee42aadc352d4a12a9772269f08caceccfdfc395664f9fe from build tracker '/tmp/pip-req-tracker-z2oibowz'
2021-06-28T04:47:49,729 Created temporary directory: /tmp/pip-unpack-gg6kz_j7
2021-06-28T04:47:49,730 Building wheels for collected packages: mgatk
2021-06-28T04:47:49,738   Created temporary directory: /tmp/pip-wheel-049cih7g
2021-06-28T04:47:49,740   Building wheel for mgatk (setup.py): started
2021-06-28T04:47:49,741   Destination directory: /tmp/pip-wheel-049cih7g
2021-06-28T04:47:49,741   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mclzw7hh/mgatk_2db6ca0a110b41b59a983f1a35814c20/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mclzw7hh/mgatk_2db6ca0a110b41b59a983f1a35814c20/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-049cih7g
2021-06-28T04:47:52,194   running bdist_wheel
2021-06-28T04:47:52,211   running build
2021-06-28T04:47:52,212   running build_py
2021-06-28T04:47:52,554   creating build
2021-06-28T04:47:52,555   creating build/lib
2021-06-28T04:47:52,557   creating build/lib/mgatk
2021-06-28T04:47:52,560   copying mgatk/cli.py -> build/lib/mgatk
2021-06-28T04:47:52,567   copying mgatk/mgatkHelp.py -> build/lib/mgatk
2021-06-28T04:47:52,572   copying mgatk/__init__.py -> build/lib/mgatk
2021-06-28T04:47:52,576   running egg_info
2021-06-28T04:47:52,605   writing entry points to mgatk.egg-info/entry_points.txt
2021-06-28T04:47:52,608   writing top-level names to mgatk.egg-info/top_level.txt
2021-06-28T04:47:52,609   writing mgatk.egg-info/PKG-INFO
2021-06-28T04:47:52,615   writing dependency_links to mgatk.egg-info/dependency_links.txt
2021-06-28T04:47:52,617   writing requirements to mgatk.egg-info/requires.txt
2021-06-28T04:47:52,628   reading manifest file 'mgatk.egg-info/SOURCES.txt'
2021-06-28T04:47:52,640   reading manifest template 'MANIFEST.in'
2021-06-28T04:47:52,643   no previously-included directories found matching 'tests/'
2021-06-28T04:47:52,645   no previously-included directories found matching '*.DS_Store'
2021-06-28T04:47:52,737   writing manifest file 'mgatk.egg-info/SOURCES.txt'
2021-06-28T04:47:52,753   copying mgatk/.DS_Store -> build/lib/mgatk
2021-06-28T04:47:52,760   copying mgatk/devnotes.md -> build/lib/mgatk
2021-06-28T04:47:52,765   creating build/lib/mgatk/__pycache__
2021-06-28T04:47:52,767   copying mgatk/__pycache__/__init__.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-06-28T04:47:52,772   copying mgatk/__pycache__/__init__.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-06-28T04:47:52,778   copying mgatk/__pycache__/cli.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-06-28T04:47:52,786   copying mgatk/__pycache__/cli.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-06-28T04:47:52,795   copying mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/lib/mgatk/__pycache__
2021-06-28T04:47:52,801   copying mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/lib/mgatk/__pycache__
2021-06-28T04:47:52,808   creating build/lib/mgatk/bin
2021-06-28T04:47:52,809   copying mgatk/bin/.DS_Store -> build/lib/mgatk/bin
2021-06-28T04:47:52,817   copying mgatk/bin/picard.jar -> build/lib/mgatk/bin
2021-06-28T04:47:54,247   creating build/lib/mgatk/bin/R
2021-06-28T04:47:54,249   copying mgatk/bin/R/toRDS.R -> build/lib/mgatk/bin/R
2021-06-28T04:47:54,255   creating build/lib/mgatk/bin/anno
2021-06-28T04:47:54,257   copying mgatk/bin/anno/.DS_Store -> build/lib/mgatk/bin/anno
2021-06-28T04:47:54,263   creating build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,265   copying mgatk/bin/anno/fasta/.DS_Store -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,273   copying mgatk/bin/anno/fasta/GRCh37.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,282   copying mgatk/bin/anno/fasta/GRCh38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,291   copying mgatk/bin/anno/fasta/GRCm38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,300   copying mgatk/bin/anno/fasta/GRCz10.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,308   copying mgatk/bin/anno/fasta/NC_012920.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,317   copying mgatk/bin/anno/fasta/hg19.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,326   copying mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,334   copying mgatk/bin/anno/fasta/hg38.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,343   copying mgatk/bin/anno/fasta/mm10.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,352   copying mgatk/bin/anno/fasta/mm9.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,361   copying mgatk/bin/anno/fasta/rCRS.fasta -> build/lib/mgatk/bin/anno/fasta
2021-06-28T04:47:54,369   creating build/lib/mgatk/bin/python
2021-06-28T04:47:54,370   copying mgatk/bin/python/chunk_barcoded_bam.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,376   copying mgatk/bin/python/filterClipBam.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,381   copying mgatk/bin/python/find_barcodes.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,386   copying mgatk/bin/python/oneSample.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,393   copying mgatk/bin/python/split_barcoded_bam.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,399   copying mgatk/bin/python/sumstatsBP.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,407   copying mgatk/bin/python/sumstatsBP_overlap.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,415   copying mgatk/bin/python/sumstatsBPtenx.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,421   copying mgatk/bin/python/sumstatsBPtenx_overlap.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,429   copying mgatk/bin/python/variant_calling.py -> build/lib/mgatk/bin/python
2021-06-28T04:47:54,437   creating build/lib/mgatk/bin/snake
2021-06-28T04:47:54,440   copying mgatk/bin/snake/Snakefile.Gather -> build/lib/mgatk/bin/snake
2021-06-28T04:47:54,447   copying mgatk/bin/snake/Snakefile.Scatter -> build/lib/mgatk/bin/snake
2021-06-28T04:47:54,454   copying mgatk/bin/snake/Snakefile.tenx -> build/lib/mgatk/bin/snake
2021-06-28T04:47:54,462   creating build/lib/mgatk/del
2021-06-28T04:47:54,464   copying mgatk/del/.DS_Store -> build/lib/mgatk/del
2021-06-28T04:47:54,473   copying mgatk/del/clidel.py -> build/lib/mgatk/del
2021-06-28T04:47:54,480   copying mgatk/del/clifind.py -> build/lib/mgatk/del
2021-06-28T04:47:54,487   creating build/lib/mgatk/del/__pycache__
2021-06-28T04:47:54,489   copying mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2021-06-28T04:47:54,497   copying mgatk/del/__pycache__/clidel.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2021-06-28T04:47:54,505   copying mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2021-06-28T04:47:54,512   copying mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2021-06-28T04:47:54,518   creating build/lib/mgatk/del/bulk_del
2021-06-28T04:47:54,521   copying mgatk/del/bulk_del/.DS_Store -> build/lib/mgatk/del/bulk_del
2021-06-28T04:47:54,529   copying mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/lib/mgatk/del/bulk_del
2021-06-28T04:47:54,536   creating build/lib/mgatk/del/singles_del
2021-06-28T04:47:54,538   copying mgatk/del/singles_del/01_process_cell_reads.py -> build/lib/mgatk/del/singles_del
2021-06-28T04:47:54,546   copying mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/lib/mgatk/del/singles_del
2021-06-28T04:47:54,552   copying mgatk/del/singles_del/Snakefile.delSingles -> build/lib/mgatk/del/singles_del
2021-06-28T04:47:54,569   installing to build/bdist.linux-armv7l/wheel
2021-06-28T04:47:54,570   running install
2021-06-28T04:47:54,571   running install_lib
2021-06-28T04:47:54,580   creating build/bdist.linux-armv7l
2021-06-28T04:47:54,581   creating build/bdist.linux-armv7l/wheel
2021-06-28T04:47:54,585   creating build/bdist.linux-armv7l/wheel/mgatk
2021-06-28T04:47:54,588   creating build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-06-28T04:47:54,590   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-06-28T04:47:54,596   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-06-28T04:47:54,601   copying build/lib/mgatk/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-06-28T04:47:54,605   copying build/lib/mgatk/__pycache__/cli.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-06-28T04:47:54,611   copying build/lib/mgatk/__pycache__/cli.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-06-28T04:47:54,619   copying build/lib/mgatk/__pycache__/__init__.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2021-06-28T04:47:54,624   copying build/lib/mgatk/cli.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-06-28T04:47:54,633   copying build/lib/mgatk/devnotes.md -> build/bdist.linux-armv7l/wheel/mgatk
2021-06-28T04:47:54,638   copying build/lib/mgatk/mgatkHelp.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-06-28T04:47:54,646   copying build/lib/mgatk/__init__.py -> build/bdist.linux-armv7l/wheel/mgatk
2021-06-28T04:47:54,653   creating build/bdist.linux-armv7l/wheel/mgatk/del
2021-06-28T04:47:54,657   creating build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-06-28T04:47:54,661   copying build/lib/mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-06-28T04:47:54,667   copying build/lib/mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-06-28T04:47:54,674   copying build/lib/mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-06-28T04:47:54,680   copying build/lib/mgatk/del/__pycache__/clidel.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2021-06-28T04:47:54,688   creating build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-06-28T04:47:54,691   copying build/lib/mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-06-28T04:47:54,699   copying build/lib/mgatk/del/bulk_del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2021-06-28T04:47:54,706   copying build/lib/mgatk/del/clifind.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-06-28T04:47:54,712   copying build/lib/mgatk/del/clidel.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-06-28T04:47:54,721   creating build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-06-28T04:47:54,724   copying build/lib/mgatk/del/singles_del/01_process_cell_reads.py -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-06-28T04:47:54,730   copying build/lib/mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-06-28T04:47:54,736   copying build/lib/mgatk/del/singles_del/Snakefile.delSingles -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2021-06-28T04:47:54,742   copying build/lib/mgatk/del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del
2021-06-28T04:47:54,750   creating build/bdist.linux-armv7l/wheel/mgatk/bin
2021-06-28T04:47:54,755   creating build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-06-28T04:47:54,757   copying build/lib/mgatk/bin/R/toRDS.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2021-06-28T04:47:54,763   copying build/lib/mgatk/bin/picard.jar -> build/bdist.linux-armv7l/wheel/mgatk/bin
2021-06-28T04:47:56,180   creating build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,183   copying build/lib/mgatk/bin/python/sumstatsBPtenx_overlap.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,188   copying build/lib/mgatk/bin/python/sumstatsBPtenx.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,192   copying build/lib/mgatk/bin/python/filterClipBam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,196   copying build/lib/mgatk/bin/python/oneSample.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,202   copying build/lib/mgatk/bin/python/chunk_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,208   copying build/lib/mgatk/bin/python/sumstatsBP.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,214   copying build/lib/mgatk/bin/python/variant_calling.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,221   copying build/lib/mgatk/bin/python/split_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,227   copying build/lib/mgatk/bin/python/sumstatsBP_overlap.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,233   copying build/lib/mgatk/bin/python/find_barcodes.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2021-06-28T04:47:56,241   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2021-06-28T04:47:56,245   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,249   copying build/lib/mgatk/bin/anno/fasta/mm10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,258   copying build/lib/mgatk/bin/anno/fasta/rCRS.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,267   copying build/lib/mgatk/bin/anno/fasta/GRCm38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,276   copying build/lib/mgatk/bin/anno/fasta/hg38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,285   copying build/lib/mgatk/bin/anno/fasta/GRCh37.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,292   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,299   copying build/lib/mgatk/bin/anno/fasta/NC_012920.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,308   copying build/lib/mgatk/bin/anno/fasta/hg19.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,317   copying build/lib/mgatk/bin/anno/fasta/mm9.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,325   copying build/lib/mgatk/bin/anno/fasta/GRCz10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,332   copying build/lib/mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,338   copying build/lib/mgatk/bin/anno/fasta/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2021-06-28T04:47:56,345   copying build/lib/mgatk/bin/anno/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2021-06-28T04:47:56,355   creating build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-06-28T04:47:56,359   copying build/lib/mgatk/bin/snake/Snakefile.tenx -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-06-28T04:47:56,366   copying build/lib/mgatk/bin/snake/Snakefile.Scatter -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-06-28T04:47:56,371   copying build/lib/mgatk/bin/snake/Snakefile.Gather -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2021-06-28T04:47:56,377   copying build/lib/mgatk/bin/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin
2021-06-28T04:47:56,384   copying build/lib/mgatk/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk
2021-06-28T04:47:56,392   running install_egg_info
2021-06-28T04:47:56,415   Copying mgatk.egg-info to build/bdist.linux-armv7l/wheel/mgatk-0.6.2-py3.5.egg-info
2021-06-28T04:47:56,455   running install_scripts
2021-06-28T04:47:56,665   creating build/bdist.linux-armv7l/wheel/mgatk-0.6.2.dist-info/WHEEL
2021-06-28T04:48:01,567   Building wheel for mgatk (setup.py): finished with status 'done'
2021-06-28T04:48:01,808   Created wheel for mgatk: filename=mgatk-0.6.2-py2.py3-none-any.whl size=14349433 sha256=ad87bf28d8140677cd9328a5b9582470aedc1867c3a9b307d9420c2712454009
2021-06-28T04:48:01,809   Stored in directory: /tmp/pip-ephem-wheel-cache-wttpb4kq/wheels/fe/61/0c/9fd2da0178b94915efb7d0e2d25d5ed3b16606be3ad2b6a649
2021-06-28T04:48:01,840 Successfully built mgatk
2021-06-28T04:48:04,324 Removed build tracker: '/tmp/pip-req-tracker-z2oibowz'