2021-06-28T18:28:27,431 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-06-28T18:28:28,032 Created temporary directory: /tmp/pip-ephem-wheel-cache-0o8o070w
2021-06-28T18:28:28,036 Created temporary directory: /tmp/pip-req-tracker-2d48hx21
2021-06-28T18:28:28,037 Initialized build tracking at /tmp/pip-req-tracker-2d48hx21
2021-06-28T18:28:28,038 Created build tracker: /tmp/pip-req-tracker-2d48hx21
2021-06-28T18:28:28,038 Entered build tracker: /tmp/pip-req-tracker-2d48hx21
2021-06-28T18:28:28,039 Created temporary directory: /tmp/pip-wheel-u0g8nnii
2021-06-28T18:28:28,099 1 location(s) to search for versions of apples:
2021-06-28T18:28:28,099 * https://pypi.org/simple/apples/
2021-06-28T18:28:28,100 Fetching project page and analyzing links: https://pypi.org/simple/apples/
2021-06-28T18:28:28,102 Getting page https://pypi.org/simple/apples/
2021-06-28T18:28:28,106 Found index url https://pypi.org/simple
2021-06-28T18:28:28,398   Found link https://files.pythonhosted.org/packages/a8/62/73af68231d768bcc781a2289e5c93b1b4060c1da888186a3cb4fc06f2b35/apples-1.2.1.tar.gz#sha256=7814a03ebcc2bd1afe51c7b90d43e068c84a6385b87462e62992ca8294ee9593 (from https://pypi.org/simple/apples/), version: 1.2.1
2021-06-28T18:28:28,399   Found link https://files.pythonhosted.org/packages/08/e6/24efd5e5fb01a411a389c5c870310ee0e751e19b1f753228ec40eeeb84e3/apples-1.2.3.tar.gz#sha256=22459c89f177f4ae49803d5d87ae219de503c3c7f9054b36027ddc0ae57243a8 (from https://pypi.org/simple/apples/), version: 1.2.3
2021-06-28T18:28:28,399   Found link https://files.pythonhosted.org/packages/8b/20/94d3ca2ae0368df0d1d0c864d1cf51250a7ddf7c1808c91dbfb87f677ba6/apples-1.2.4.tar.gz#sha256=4c199a183cb001a678a74312b2c4c193c42ec773c29cba2200e17c3ad97fe943 (from https://pypi.org/simple/apples/), version: 1.2.4
2021-06-28T18:28:28,400   Found link https://files.pythonhosted.org/packages/a9/fd/681f0174edefb362000f60988e31292ec502f73e3cb25c322d1c6d2fb9fc/apples-1.3.0.tar.gz#sha256=50909b4ddca5c9ee3e0c8b623bdbfa5a00f05969f5bcf65904cefb861fcb510d (from https://pypi.org/simple/apples/), version: 1.3.0
2021-06-28T18:28:28,401   Found link https://files.pythonhosted.org/packages/ca/06/8fb609001720a6af6f1467bfe9b93e422fd49c174aedf947f15fd8ed10bc/apples-2.0.0.tar.gz#sha256=87de7488aaf7705b599dbefb1712a26efc2a48616bf97fcadcf383065a722c2b (from https://pypi.org/simple/apples/), version: 2.0.0
2021-06-28T18:28:28,402   Found link https://files.pythonhosted.org/packages/32/65/fae772f0a15813698c50cee20bfadebda401aa05f8ab17150d4b89537efb/apples-2.0.1.tar.gz#sha256=e4e30ff684f47c5dc50ae5ee69ef8bb1a8bcf93643f719dbd198c7ddbea9d8df (from https://pypi.org/simple/apples/), version: 2.0.1
2021-06-28T18:28:28,403   Found link https://files.pythonhosted.org/packages/f1/be/71602abfbba6cd73baf152b703bbe8085b41291dcf4b8b5ac386cc51fafc/apples-2.0.2.tar.gz#sha256=68a54265cd5069f2940a736810b179a911c81bfcc1b844283de639a0e8f1d9f2 (from https://pypi.org/simple/apples/), version: 2.0.2
2021-06-28T18:28:28,403   Found link https://files.pythonhosted.org/packages/e8/30/1f880163b12a0887ea3a641e662b830c6889da60fafca54e7c0d8f3dbc41/apples-2.0.3.tar.gz#sha256=6ea8e1becdf55ec1c8a6f5655b1c32973d9c8759e1eaaff12a16c3eca1c3edbd (from https://pypi.org/simple/apples/), version: 2.0.3
2021-06-28T18:28:28,404   Found link https://files.pythonhosted.org/packages/11/aa/9a114032ccd2457d1031111160855525fe884d6c00a9126ee3c8bcff29dc/apples-2.0.4.tar.gz#sha256=dcca3f231d41f8892eab7db7064f9239e55190905412c2bf1877e9d5ae94b854 (from https://pypi.org/simple/apples/), version: 2.0.4
2021-06-28T18:28:28,432 Given no hashes to check 1 links for project 'apples': discarding no candidates
2021-06-28T18:28:28,461 Collecting apples==2.0.4
2021-06-28T18:28:28,464   Created temporary directory: /tmp/pip-unpack-y90u8xlb
2021-06-28T18:28:29,122   Downloading apples-2.0.4.tar.gz (757 kB)
2021-06-28T18:28:29,547   Added apples==2.0.4 from https://files.pythonhosted.org/packages/11/aa/9a114032ccd2457d1031111160855525fe884d6c00a9126ee3c8bcff29dc/apples-2.0.4.tar.gz#sha256=dcca3f231d41f8892eab7db7064f9239e55190905412c2bf1877e9d5ae94b854 to build tracker '/tmp/pip-req-tracker-2d48hx21'
2021-06-28T18:28:29,549     Running setup.py (path:/tmp/pip-wheel-u0g8nnii/apples_1ac6cf0085e94a24baf8e7181306e83c/setup.py) egg_info for package apples
2021-06-28T18:28:29,550     Created temporary directory: /tmp/pip-pip-egg-info-hqiznhdq
2021-06-28T18:28:29,551     Running command python setup.py egg_info
2021-06-28T18:28:31,477     running egg_info
2021-06-28T18:28:31,482     creating /tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info
2021-06-28T18:28:31,484     writing /tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info/PKG-INFO
2021-06-28T18:28:31,488     writing top-level names to /tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info/top_level.txt
2021-06-28T18:28:31,491     writing requirements to /tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info/requires.txt
2021-06-28T18:28:31,492     writing dependency_links to /tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info/dependency_links.txt
2021-06-28T18:28:31,495     writing manifest file '/tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info/SOURCES.txt'
2021-06-28T18:28:31,807     reading manifest file '/tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info/SOURCES.txt'
2021-06-28T18:28:31,810     reading manifest template 'MANIFEST.in'
2021-06-28T18:28:31,820     writing manifest file '/tmp/pip-pip-egg-info-hqiznhdq/apples.egg-info/SOURCES.txt'
2021-06-28T18:28:31,942   Source in /tmp/pip-wheel-u0g8nnii/apples_1ac6cf0085e94a24baf8e7181306e83c has version 2.0.4, which satisfies requirement apples==2.0.4 from https://files.pythonhosted.org/packages/11/aa/9a114032ccd2457d1031111160855525fe884d6c00a9126ee3c8bcff29dc/apples-2.0.4.tar.gz#sha256=dcca3f231d41f8892eab7db7064f9239e55190905412c2bf1877e9d5ae94b854
2021-06-28T18:28:31,943   Removed apples==2.0.4 from https://files.pythonhosted.org/packages/11/aa/9a114032ccd2457d1031111160855525fe884d6c00a9126ee3c8bcff29dc/apples-2.0.4.tar.gz#sha256=dcca3f231d41f8892eab7db7064f9239e55190905412c2bf1877e9d5ae94b854 from build tracker '/tmp/pip-req-tracker-2d48hx21'
2021-06-28T18:28:31,950 Created temporary directory: /tmp/pip-unpack-rndxag5m
2021-06-28T18:28:31,951 Building wheels for collected packages: apples
2021-06-28T18:28:31,957   Created temporary directory: /tmp/pip-wheel-v5lwxths
2021-06-28T18:28:31,958   Building wheel for apples (setup.py): started
2021-06-28T18:28:31,958   Destination directory: /tmp/pip-wheel-v5lwxths
2021-06-28T18:28:31,959   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u0g8nnii/apples_1ac6cf0085e94a24baf8e7181306e83c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u0g8nnii/apples_1ac6cf0085e94a24baf8e7181306e83c/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v5lwxths
2021-06-28T18:28:33,875   running bdist_wheel
2021-06-28T18:28:33,888   running build
2021-06-28T18:28:33,889   running build_py
2021-06-28T18:28:34,179   creating build
2021-06-28T18:28:34,180   creating build/lib
2021-06-28T18:28:34,181   creating build/lib/apples
2021-06-28T18:28:34,183   copying apples/util.py -> build/lib/apples
2021-06-28T18:28:34,186   copying apples/__init__.py -> build/lib/apples
2021-06-28T18:28:34,189   copying apples/Subtree.py -> build/lib/apples
2021-06-28T18:28:34,192   copying apples/OLS.py -> build/lib/apples
2021-06-28T18:28:34,195   copying apples/fasta2dic.py -> build/lib/apples
2021-06-28T18:28:34,198   copying apples/distance.py -> build/lib/apples
2021-06-28T18:28:34,201   copying apples/PoolRepresentativeWorker.py -> build/lib/apples
2021-06-28T18:28:34,204   copying apples/OptionsBasic.py -> build/lib/apples
2021-06-28T18:28:34,207   copying apples/OptionsBuild.py -> build/lib/apples
2021-06-28T18:28:34,210   copying apples/BME.py -> build/lib/apples
2021-06-28T18:28:34,215   copying apples/OptionsRun.py -> build/lib/apples
2021-06-28T18:28:34,219   copying apples/FM.py -> build/lib/apples
2021-06-28T18:28:34,224   copying apples/Algorithm.py -> build/lib/apples
2021-06-28T18:28:34,229   copying apples/PoolQueryWorker.py -> build/lib/apples
2021-06-28T18:28:34,234   copying apples/jutil.py -> build/lib/apples
2021-06-28T18:28:34,237   copying apples/BE.py -> build/lib/apples
2021-06-28T18:28:34,240   copying apples/PrioritySet.py -> build/lib/apples
2021-06-28T18:28:34,243   copying apples/Reference.py -> build/lib/apples
2021-06-28T18:28:34,246   copying apples/prepareTree.py -> build/lib/apples
2021-06-28T18:28:34,249   copying apples/reestimateBackbone.py -> build/lib/apples
2021-06-28T18:28:34,252   creating build/lib/apples/tools
2021-06-28T18:28:34,254   copying apples/tools/__init__.py -> build/lib/apples/tools
2021-06-28T18:28:34,256   running egg_info
2021-06-28T18:28:34,280   writing requirements to apples.egg-info/requires.txt
2021-06-28T18:28:34,282   writing apples.egg-info/PKG-INFO
2021-06-28T18:28:34,286   writing top-level names to apples.egg-info/top_level.txt
2021-06-28T18:28:34,287   writing dependency_links to apples.egg-info/dependency_links.txt
2021-06-28T18:28:34,298   reading manifest file 'apples.egg-info/SOURCES.txt'
2021-06-28T18:28:34,302   reading manifest template 'MANIFEST.in'
2021-06-28T18:28:34,313   writing manifest file 'apples.egg-info/SOURCES.txt'
2021-06-28T18:28:34,317   copying apples/tools/FastTree-darwin -> build/lib/apples/tools
2021-06-28T18:28:34,362   copying apples/tools/FastTree-linux -> build/lib/apples/tools
2021-06-28T18:28:34,382   copying apples/tools/FastTree.exe -> build/lib/apples/tools
2021-06-28T18:28:34,407   running build_scripts
2021-06-28T18:28:34,409   creating build/scripts-3.5
2021-06-28T18:28:34,411   copying and adjusting run_apples.py -> build/scripts-3.5
2021-06-28T18:28:34,417   copying and adjusting build_applesdtb.py -> build/scripts-3.5
2021-06-28T18:28:34,418   changing mode of build/scripts-3.5/run_apples.py from 644 to 755
2021-06-28T18:28:34,419   changing mode of build/scripts-3.5/build_applesdtb.py from 644 to 755
2021-06-28T18:28:34,426   installing to build/bdist.linux-armv7l/wheel
2021-06-28T18:28:34,427   running install
2021-06-28T18:28:34,428   running install_lib
2021-06-28T18:28:34,435   creating build/bdist.linux-armv7l
2021-06-28T18:28:34,435   creating build/bdist.linux-armv7l/wheel
2021-06-28T18:28:34,438   creating build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,439   copying build/lib/apples/util.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,442   copying build/lib/apples/__init__.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,445   copying build/lib/apples/Subtree.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,448   copying build/lib/apples/OLS.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,450   copying build/lib/apples/fasta2dic.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,453   copying build/lib/apples/distance.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,457   copying build/lib/apples/PoolRepresentativeWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,461   copying build/lib/apples/OptionsBasic.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,466   copying build/lib/apples/OptionsBuild.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,470   copying build/lib/apples/BME.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,476   copying build/lib/apples/OptionsRun.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,479   copying build/lib/apples/FM.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,482   copying build/lib/apples/Algorithm.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,485   copying build/lib/apples/PoolQueryWorker.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,488   copying build/lib/apples/jutil.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,491   copying build/lib/apples/BE.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,494   copying build/lib/apples/PrioritySet.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,497   copying build/lib/apples/Reference.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,502   copying build/lib/apples/prepareTree.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,507   creating build/bdist.linux-armv7l/wheel/apples/tools
2021-06-28T18:28:34,510   copying build/lib/apples/tools/__init__.py -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-28T18:28:34,514   copying build/lib/apples/tools/FastTree.exe -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-28T18:28:34,533   copying build/lib/apples/tools/FastTree-darwin -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-28T18:28:34,575   copying build/lib/apples/tools/FastTree-linux -> build/bdist.linux-armv7l/wheel/apples/tools
2021-06-28T18:28:34,595   copying build/lib/apples/reestimateBackbone.py -> build/bdist.linux-armv7l/wheel/apples
2021-06-28T18:28:34,597   running install_egg_info
2021-06-28T18:28:34,612   Copying apples.egg-info to build/bdist.linux-armv7l/wheel/apples-2.0.4-py3.5.egg-info
2021-06-28T18:28:34,631   running install_scripts
2021-06-28T18:28:34,749   creating build/bdist.linux-armv7l/wheel/apples-2.0.4.data
2021-06-28T18:28:34,750   creating build/bdist.linux-armv7l/wheel/apples-2.0.4.data/scripts
2021-06-28T18:28:34,752   copying build/scripts-3.5/build_applesdtb.py -> build/bdist.linux-armv7l/wheel/apples-2.0.4.data/scripts
2021-06-28T18:28:34,755   copying build/scripts-3.5/run_apples.py -> build/bdist.linux-armv7l/wheel/apples-2.0.4.data/scripts
2021-06-28T18:28:34,758   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.4.data/scripts/build_applesdtb.py to 755
2021-06-28T18:28:34,759   changing mode of build/bdist.linux-armv7l/wheel/apples-2.0.4.data/scripts/run_apples.py to 755
2021-06-28T18:28:34,795   creating build/bdist.linux-armv7l/wheel/apples-2.0.4.dist-info/WHEEL
2021-06-28T18:28:35,494   Building wheel for apples (setup.py): finished with status 'done'
2021-06-28T18:28:35,509   Created wheel for apples: filename=apples-2.0.4-py3-none-any.whl size=765405 sha256=cb14fc20a431720fbec493e2bd452ec93e0bde1d91d57d6381e0d3d76a01158b
2021-06-28T18:28:35,509   Stored in directory: /tmp/pip-ephem-wheel-cache-0o8o070w/wheels/f8/74/0f/574561ce884a6a901b931976767ac01074239d2f24af95053f
2021-06-28T18:28:35,525 Successfully built apples
2021-06-28T18:28:35,822 Removed build tracker: '/tmp/pip-req-tracker-2d48hx21'