2021-07-08T20:49:02,879 Created temporary directory: /tmp/pip-ephem-wheel-cache-2m5nokr9 2021-07-08T20:49:02,882 Created temporary directory: /tmp/pip-req-tracker-xgi7mmzc 2021-07-08T20:49:02,882 Initialized build tracking at /tmp/pip-req-tracker-xgi7mmzc 2021-07-08T20:49:02,882 Created build tracker: /tmp/pip-req-tracker-xgi7mmzc 2021-07-08T20:49:02,883 Entered build tracker: /tmp/pip-req-tracker-xgi7mmzc 2021-07-08T20:49:02,883 Created temporary directory: /tmp/pip-wheel-o708g8_j 2021-07-08T20:49:02,915 1 location(s) to search for versions of nwalign: 2021-07-08T20:49:02,915 * https://pypi.org/simple/nwalign/ 2021-07-08T20:49:02,915 Fetching project page and analyzing links: https://pypi.org/simple/nwalign/ 2021-07-08T20:49:02,916 Getting page https://pypi.org/simple/nwalign/ 2021-07-08T20:49:02,917 Found index url https://pypi.org/simple 2021-07-08T20:49:03,006 Found link https://files.pythonhosted.org/packages/c8/26/9ca7ef2ddd1680a8a56c8b9c04f0b97f6c5a4b1fdd32f4795022317823a8/nwalign-0.1.tar.gz#sha256=4faa5fa9e60b19bee52adbf0a511b970bd29ad01d91112088c468c0bd58085cd (from https://pypi.org/simple/nwalign/), version: 0.1 2021-07-08T20:49:03,007 Found link https://files.pythonhosted.org/packages/a1/c8/1e9a68782c95d700d695c8b1f3a8934e1072e8ed60491e430896b834f961/nwalign-0.1.1.tar.gz#sha256=6fad7673d67932c0c670f564f8d9c8c7af264c7300c8038a245014a9d62b50dd (from https://pypi.org/simple/nwalign/), version: 0.1.1 2021-07-08T20:49:03,007 Found link https://files.pythonhosted.org/packages/b0/88/af6b4592f61add748195ef777dce0892bde1e2520d81b92e80e76b86deb4/nwalign-0.1.2.tar.gz#sha256=46db767c135bd698649657f17fdd091c6eb12acc0061fb0559df94e15ab7b149 (from https://pypi.org/simple/nwalign/), version: 0.1.2 2021-07-08T20:49:03,007 Found link https://files.pythonhosted.org/packages/e4/56/1e74d542efb45570042356a81bbad81cc6adc23bb4d5fcf6fd642ec2658b/nwalign-0.1.3.tar.gz#sha256=4fa6ca37c80650269e58437c4ac7969fa69ef7929ecfff279f6529e9f3a86fd9 (from https://pypi.org/simple/nwalign/), version: 0.1.3 2021-07-08T20:49:03,008 Found link https://files.pythonhosted.org/packages/5d/35/f962c0a6d870ea7ff96ba2465b276054192d36597cee2832972a0736bbb1/nwalign-0.2.tar.gz#sha256=c0984d30a9e7b95ceffda4265c8c2f4faf3ebf41ade008744df870bfa83c0b18 (from https://pypi.org/simple/nwalign/), version: 0.2 2021-07-08T20:49:03,008 Found link https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz#sha256=8bd5786ad2d43282e5f5163f298cb232a7a154769398189a130eb34e61adc952 (from https://pypi.org/simple/nwalign/), version: 0.3.0 2021-07-08T20:49:03,008 Found link https://files.pythonhosted.org/packages/33/f9/96fdb624719c4122d559af37275c9af258ca9b1b93411e16ef0ec4899c3f/nwalign-0.3.1.tar.gz#sha256=bdbf1948df8421ef744ebf2993341df1f8431bbe41f4ce31241fff88d4d8e781 (from https://pypi.org/simple/nwalign/), version: 0.3.1 2021-07-08T20:49:03,008 Skipping link: not a file: https://pypi.org/simple/nwalign/ 2021-07-08T20:49:03,025 Given no hashes to check 1 links for project 'nwalign': discarding no candidates 2021-07-08T20:49:03,043 Collecting nwalign==0.3.0 2021-07-08T20:49:03,044 Created temporary directory: /tmp/pip-unpack-2q9qqagl 2021-07-08T20:49:03,234 Downloading nwalign-0.3.0.tar.gz (51 kB) 2021-07-08T20:49:03,298 Added nwalign==0.3.0 from https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz#sha256=8bd5786ad2d43282e5f5163f298cb232a7a154769398189a130eb34e61adc952 to build tracker '/tmp/pip-req-tracker-xgi7mmzc' 2021-07-08T20:49:03,299 Running setup.py (path:/tmp/pip-wheel-o708g8_j/nwalign_60ddc7ae8322495681ad474bc7db8f0b/setup.py) egg_info for package nwalign 2021-07-08T20:49:03,299 Created temporary directory: /tmp/pip-pip-egg-info-0_qra72v 2021-07-08T20:49:03,300 Running command python setup.py egg_info 2021-07-08T20:49:04,369 running egg_info 2021-07-08T20:49:04,372 creating /tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info 2021-07-08T20:49:04,373 writing /tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/PKG-INFO 2021-07-08T20:49:04,376 writing dependency_links to /tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/dependency_links.txt 2021-07-08T20:49:04,377 writing entry points to /tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/entry_points.txt 2021-07-08T20:49:04,379 writing requirements to /tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/requires.txt 2021-07-08T20:49:04,380 writing top-level names to /tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/top_level.txt 2021-07-08T20:49:04,382 writing manifest file '/tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/SOURCES.txt' 2021-07-08T20:49:04,739 reading manifest file '/tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/SOURCES.txt' 2021-07-08T20:49:04,743 writing manifest file '/tmp/pip-pip-egg-info-0_qra72v/nwalign.egg-info/SOURCES.txt' 2021-07-08T20:49:04,848 Source in /tmp/pip-wheel-o708g8_j/nwalign_60ddc7ae8322495681ad474bc7db8f0b has version 0.3.0, which satisfies requirement nwalign==0.3.0 from https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz#sha256=8bd5786ad2d43282e5f5163f298cb232a7a154769398189a130eb34e61adc952 2021-07-08T20:49:04,849 Removed nwalign==0.3.0 from https://files.pythonhosted.org/packages/d1/2e/44355ba45f5a7ae0f0e1dcce833952470a95353669307a9a90affcbb757e/nwalign-0.3.0.tar.gz#sha256=8bd5786ad2d43282e5f5163f298cb232a7a154769398189a130eb34e61adc952 from build tracker '/tmp/pip-req-tracker-xgi7mmzc' 2021-07-08T20:49:04,853 Created temporary directory: /tmp/pip-unpack-2_fyx8bq 2021-07-08T20:49:04,853 Building wheels for collected packages: nwalign 2021-07-08T20:49:04,858 Created temporary directory: /tmp/pip-wheel-23zlmapr 2021-07-08T20:49:04,859 Building wheel for nwalign (setup.py): started 2021-07-08T20:49:04,859 Destination directory: /tmp/pip-wheel-23zlmapr 2021-07-08T20:49:04,860 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-o708g8_j/nwalign_60ddc7ae8322495681ad474bc7db8f0b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-o708g8_j/nwalign_60ddc7ae8322495681ad474bc7db8f0b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-23zlmapr 2021-07-08T20:49:05,919 running bdist_wheel 2021-07-08T20:49:06,110 running build 2021-07-08T20:49:06,111 running build_py 2021-07-08T20:49:06,249 creating build 2021-07-08T20:49:06,249 creating build/lib.linux-armv7l-3.9 2021-07-08T20:49:06,250 creating build/lib.linux-armv7l-3.9/nwalign 2021-07-08T20:49:06,251 copying nwalign/nwserver.py -> build/lib.linux-armv7l-3.9/nwalign 2021-07-08T20:49:06,253 copying nwalign/__init__.py -> build/lib.linux-armv7l-3.9/nwalign 2021-07-08T20:49:06,255 running egg_info 2021-07-08T20:49:06,267 writing nwalign.egg-info/PKG-INFO 2021-07-08T20:49:06,269 writing dependency_links to nwalign.egg-info/dependency_links.txt 2021-07-08T20:49:06,271 writing entry points to nwalign.egg-info/entry_points.txt 2021-07-08T20:49:06,272 writing requirements to nwalign.egg-info/requires.txt 2021-07-08T20:49:06,273 writing top-level names to nwalign.egg-info/top_level.txt 2021-07-08T20:49:06,279 reading manifest file 'nwalign.egg-info/SOURCES.txt' 2021-07-08T20:49:06,283 writing manifest file 'nwalign.egg-info/SOURCES.txt' 2021-07-08T20:49:06,286 copying nwalign/cnwalign.c -> build/lib.linux-armv7l-3.9/nwalign 2021-07-08T20:49:06,298 running build_ext 2021-07-08T20:49:06,303 building 'nwalign/cnwalign' extension 2021-07-08T20:49:06,303 creating build/temp.linux-armv7l-3.9 2021-07-08T20:49:06,304 creating build/temp.linux-armv7l-3.9/nwalign 2021-07-08T20:49:06,304 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -Inwalign -I/usr/include/python3.9 -c nwalign/cnwalign.c -o build/temp.linux-armv7l-3.9/nwalign/cnwalign.o 2021-07-08T20:49:06,727 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-08T20:49:06,728 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-08T20:49:06,728 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-08T20:49:06,728 from nwalign/cnwalign.c:144: 2021-07-08T20:49:06,728 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-08T20:49:06,728 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-08T20:49:06,729 | ^~~~~~~ 2021-07-08T20:49:06,793 nwalign/cnwalign.c: In function ‘__pyx_f_7nwalign_8cnwalign_read_matrix’: 2021-07-08T20:49:06,794 nwalign/cnwalign.c:1603:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,794 1603 | __pyx_t_8 = PyEval_CallObjectWithKeywords(__pyx_t_5, __pyx_t_2, ((PyObject *)__pyx_t_6)); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 74; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,794 | ^~~~~~~~~ 2021-07-08T20:49:06,794 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,795 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,795 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,795 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,795 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,804 nwalign/cnwalign.c:1326:14: warning: variable ‘__pyx_bshape_1_a’ set but not used [-Wunused-but-set-variable] 2021-07-08T20:49:06,804 1326 | Py_ssize_t __pyx_bshape_1_a = 0; 2021-07-08T20:49:06,804 | ^~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,805 nwalign/cnwalign.c:1325:14: warning: variable ‘__pyx_bshape_0_a’ set but not used [-Wunused-but-set-variable] 2021-07-08T20:49:06,805 1325 | Py_ssize_t __pyx_bshape_0_a = 0; 2021-07-08T20:49:06,805 | ^~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,805 nwalign/cnwalign.c:1324:14: warning: variable ‘__pyx_bstride_1_a’ set but not used [-Wunused-but-set-variable] 2021-07-08T20:49:06,805 1324 | Py_ssize_t __pyx_bstride_1_a = 0; 2021-07-08T20:49:06,805 | ^~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,806 nwalign/cnwalign.c:1323:14: warning: variable ‘__pyx_bstride_0_a’ set but not used [-Wunused-but-set-variable] 2021-07-08T20:49:06,806 1323 | Py_ssize_t __pyx_bstride_0_a = 0; 2021-07-08T20:49:06,806 | ^~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,812 nwalign/cnwalign.c: In function ‘__pyx_pf_7nwalign_8cnwalign_global_align’: 2021-07-08T20:49:06,814 nwalign/cnwalign.c:2343:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,814 2343 | __pyx_t_10 = PyEval_CallObjectWithKeywords(__pyx_t_7, __pyx_t_2, ((PyObject *)__pyx_t_8)); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 128; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,814 | ^~~~~~~~~~ 2021-07-08T20:49:06,814 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,814 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,814 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,814 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,815 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,817 nwalign/cnwalign.c:2396:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,817 2396 | __pyx_t_9 = PyEval_CallObjectWithKeywords(__pyx_t_8, __pyx_t_10, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 129; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,817 | ^~~~~~~~~ 2021-07-08T20:49:06,817 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,817 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,818 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,818 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,818 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,820 nwalign/cnwalign.c:2454:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,820 2454 | __pyx_t_7 = PyEval_CallObjectWithKeywords(__pyx_t_2, __pyx_t_10, ((PyObject *)__pyx_t_8)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,821 | ^~~~~~~~~ 2021-07-08T20:49:06,821 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,821 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,821 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,821 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,821 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,824 nwalign/cnwalign.c:2512:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,824 2512 | __pyx_t_9 = PyEval_CallObjectWithKeywords(__pyx_t_8, __pyx_t_10, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,824 | ^~~~~~~~~ 2021-07-08T20:49:06,824 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,824 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,824 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,825 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,825 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,832 nwalign/cnwalign.c:2672:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,832 2672 | __pyx_t_25 = PyEval_CallObjectWithKeywords(__pyx_t_8, __pyx_t_7, ((PyObject *)__pyx_t_10)); if (unlikely(!__pyx_t_25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 143; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,833 | ^~~~~~~~~~ 2021-07-08T20:49:06,833 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,833 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,833 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,833 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,833 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,836 nwalign/cnwalign.c:2734:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,836 2734 | __pyx_t_24 = PyEval_CallObjectWithKeywords(__pyx_t_2, __pyx_t_7, ((PyObject *)__pyx_t_10)); if (unlikely(!__pyx_t_24)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 144; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,836 | ^~~~~~~~~~ 2021-07-08T20:49:06,836 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,837 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,837 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,837 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,837 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,853 nwalign/cnwalign.c:3062:16: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2021-07-08T20:49:06,854 3062 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-08T20:49:06,854 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,854 | PyBytes_FromStringAndSize 2021-07-08T20:49:06,855 nwalign/cnwalign.c:3062:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,855 3062 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-08T20:49:06,855 | ^ 2021-07-08T20:49:06,857 nwalign/cnwalign.c:3071:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,857 3071 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-08T20:49:06,857 | ^ 2021-07-08T20:49:06,872 nwalign/cnwalign.c:3080:21: warning: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration] 2021-07-08T20:49:06,872 3080 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2021-07-08T20:49:06,872 | ^~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,873 | PyBytes_AS_STRING 2021-07-08T20:49:06,874 nwalign/cnwalign.c:3080:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,874 3080 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2021-07-08T20:49:06,874 | ^ 2021-07-08T20:49:06,875 nwalign/cnwalign.c:3089:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,876 3089 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2021-07-08T20:49:06,876 | ^ 2021-07-08T20:49:06,894 nwalign/cnwalign.c:3294:3: warning: implicit declaration of function ‘_PyString_Resize’ [-Wimplicit-function-declaration] 2021-07-08T20:49:06,894 3294 | _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter); 2021-07-08T20:49:06,894 | ^~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,899 nwalign/cnwalign.c: In function ‘__pyx_f_7nwalign_8cnwalign_global_align_no_matrix’: 2021-07-08T20:49:06,900 nwalign/cnwalign.c:3654:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,901 3654 | __pyx_t_6 = PyEval_CallObjectWithKeywords(__pyx_t_3, __pyx_t_2, ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 247; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,901 | ^~~~~~~~~ 2021-07-08T20:49:06,901 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,901 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,901 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,901 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,901 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,904 nwalign/cnwalign.c:3707:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,904 3707 | __pyx_t_5 = PyEval_CallObjectWithKeywords(__pyx_t_4, __pyx_t_6, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 248; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,905 | ^~~~~~~~~ 2021-07-08T20:49:06,905 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,905 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,905 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,905 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,905 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,908 nwalign/cnwalign.c:3765:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,908 3765 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_2, __pyx_t_6, ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 250; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,909 | ^~~~~~~~~ 2021-07-08T20:49:06,909 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,909 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,909 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,909 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,909 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,912 nwalign/cnwalign.c:3823:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,912 3823 | __pyx_t_5 = PyEval_CallObjectWithKeywords(__pyx_t_4, __pyx_t_6, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 251; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,913 | ^~~~~~~~~ 2021-07-08T20:49:06,913 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,913 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,913 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,913 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,913 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,921 nwalign/cnwalign.c:3948:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,921 3948 | __pyx_t_15 = PyEval_CallObjectWithKeywords(__pyx_t_6, __pyx_t_4, ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 259; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,921 | ^~~~~~~~~~ 2021-07-08T20:49:06,921 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,922 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,922 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,922 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,922 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,925 nwalign/cnwalign.c:4004:3: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,925 4004 | __pyx_t_3 = PyEval_CallObjectWithKeywords(__pyx_t_15, __pyx_t_4, ((PyObject *)__pyx_t_5)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 260; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-08T20:49:06,925 | ^~~~~~~~~ 2021-07-08T20:49:06,925 In file included from /usr/include/python3.9/Python.h:145, 2021-07-08T20:49:06,926 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,926 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-08T20:49:06,926 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-08T20:49:06,926 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,932 nwalign/cnwalign.c:4363:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,932 4363 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-08T20:49:06,933 | ^ 2021-07-08T20:49:06,934 nwalign/cnwalign.c:4372:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,935 4372 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-08T20:49:06,935 | ^ 2021-07-08T20:49:06,937 nwalign/cnwalign.c:4381:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,937 4381 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2021-07-08T20:49:06,937 | ^ 2021-07-08T20:49:06,939 nwalign/cnwalign.c:4390:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-08T20:49:06,939 4390 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2021-07-08T20:49:06,939 | ^ 2021-07-08T20:49:06,983 nwalign/cnwalign.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-08T20:49:06,987 nwalign/cnwalign.c:7079:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,987 7079 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:06,988 | ^~ 2021-07-08T20:49:06,988 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:06,988 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:06,988 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,988 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:06,988 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:06,988 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,992 nwalign/cnwalign.c:7079:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,992 7079 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:06,993 | ^~ 2021-07-08T20:49:06,993 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:06,993 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:06,993 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,993 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-08T20:49:06,993 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-08T20:49:06,993 | ^~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:06,997 nwalign/cnwalign.c:7079:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:06,997 7079 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:06,997 | ^~ 2021-07-08T20:49:06,997 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:06,997 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:06,997 from nwalign/cnwalign.c:4: 2021-07-08T20:49:06,998 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:06,998 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:06,998 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,001 nwalign/cnwalign.c:7079:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,001 7079 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,002 | ^~ 2021-07-08T20:49:07,002 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,002 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,002 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,002 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:07,002 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:07,002 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,006 nwalign/cnwalign.c:7079:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,006 7079 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,006 | ^~ 2021-07-08T20:49:07,006 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,006 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,006 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,007 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-08T20:49:07,007 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-08T20:49:07,007 | ^~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,010 nwalign/cnwalign.c:7079:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,010 7079 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,011 | ^~ 2021-07-08T20:49:07,011 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,011 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,011 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,011 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:07,011 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:07,011 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,016 nwalign/cnwalign.c:7093:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,016 7093 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,016 | ^~ 2021-07-08T20:49:07,016 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,016 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,017 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,017 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:07,017 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:07,017 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,020 nwalign/cnwalign.c:7093:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,021 7093 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,021 | ^~ 2021-07-08T20:49:07,021 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,021 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,021 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,021 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-08T20:49:07,021 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-08T20:49:07,021 | ^~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,025 nwalign/cnwalign.c:7093:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,025 7093 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,025 | ^~ 2021-07-08T20:49:07,025 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,026 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,026 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,026 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:07,026 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:07,026 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,029 nwalign/cnwalign.c:7093:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,030 7093 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,030 | ^~ 2021-07-08T20:49:07,030 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,030 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,030 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,030 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:07,030 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:07,030 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,034 nwalign/cnwalign.c:7093:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,034 7093 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,034 | ^~ 2021-07-08T20:49:07,034 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,035 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,035 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,035 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-08T20:49:07,035 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-08T20:49:07,035 | ^~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,038 nwalign/cnwalign.c:7093:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-08T20:49:07,039 7093 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-08T20:49:07,039 | ^~ 2021-07-08T20:49:07,039 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-08T20:49:07,039 from /usr/include/python3.9/Python.h:97, 2021-07-08T20:49:07,039 from nwalign/cnwalign.c:4: 2021-07-08T20:49:07,039 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-08T20:49:07,039 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-08T20:49:07,040 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,187 At top level: 2021-07-08T20:49:07,190 nwalign/cnwalign.c:5584:13: warning: ‘__pyx_pf_5numpy_7ndarray___releasebuffer__’ defined but not used [-Wunused-function] 2021-07-08T20:49:07,190 5584 | static void __pyx_pf_5numpy_7ndarray___releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { 2021-07-08T20:49:07,191 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,193 nwalign/cnwalign.c:4779:12: warning: ‘__pyx_pf_5numpy_7ndarray___getbuffer__’ defined but not used [-Wunused-function] 2021-07-08T20:49:07,193 4779 | static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { 2021-07-08T20:49:07,194 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-08T20:49:07,194 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-08T20:49:07,194 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-08T20:49:07,194 from nwalign/cnwalign.c:144: 2021-07-08T20:49:07,194 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-08T20:49:07,195 1463 | _import_array(void) 2021-07-08T20:49:07,195 | ^~~~~~~~~~~~~ 2021-07-08T20:49:08,337 nwalign/cnwalign.c: In function ‘__pyx_f_7nwalign_8cnwalign_global_align_no_matrix.constprop’: 2021-07-08T20:49:08,338 nwalign/cnwalign.c:459:91: warning: ‘__pyx_v_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-08T20:49:08,338 459 | #define __Pyx_BufPtrStrided2d(type, buf, i0, s0, i1, s1) (type)((char*)buf + i0 * s0 + i1 * s1) 2021-07-08T20:49:08,338 | ^ 2021-07-08T20:49:08,339 nwalign/cnwalign.c:3436:10: note: ‘__pyx_v_j’ was declared here 2021-07-08T20:49:08,339 3436 | size_t __pyx_v_j; 2021-07-08T20:49:08,339 | ^~~~~~~~~ 2021-07-08T20:49:08,339 nwalign/cnwalign.c:459:81: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-08T20:49:08,339 459 | #define __Pyx_BufPtrStrided2d(type, buf, i0, s0, i1, s1) (type)((char*)buf + i0 * s0 + i1 * s1) 2021-07-08T20:49:08,340 | ^ 2021-07-08T20:49:08,341 nwalign/cnwalign.c:3435:10: note: ‘__pyx_v_i’ was declared here 2021-07-08T20:49:08,341 3435 | size_t __pyx_v_i; 2021-07-08T20:49:08,341 | ^~~~~~~~~ 2021-07-08T20:49:11,563 nwalign/cnwalign.c: In function ‘__pyx_pf_7nwalign_8cnwalign_global_align’: 2021-07-08T20:49:11,564 nwalign/cnwalign.c:459:91: warning: ‘__pyx_v_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-08T20:49:11,564 459 | #define __Pyx_BufPtrStrided2d(type, buf, i0, s0, i1, s1) (type)((char*)buf + i0 * s0 + i1 * s1) 2021-07-08T20:49:11,564 | ^ 2021-07-08T20:49:11,564 nwalign/cnwalign.c:1926:10: note: ‘__pyx_v_j’ was declared here 2021-07-08T20:49:11,564 1926 | size_t __pyx_v_j; 2021-07-08T20:49:11,565 | ^~~~~~~~~ 2021-07-08T20:49:11,565 nwalign/cnwalign.c:459:81: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-08T20:49:11,565 459 | #define __Pyx_BufPtrStrided2d(type, buf, i0, s0, i1, s1) (type)((char*)buf + i0 * s0 + i1 * s1) 2021-07-08T20:49:11,565 | ^ 2021-07-08T20:49:11,565 nwalign/cnwalign.c:1925:10: note: ‘__pyx_v_i’ was declared here 2021-07-08T20:49:11,566 1925 | size_t __pyx_v_i; 2021-07-08T20:49:11,566 | ^~~~~~~~~ 2021-07-08T20:49:13,939 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/nwalign/cnwalign.o -o build/lib.linux-armv7l-3.9/nwalign/cnwalign.cpython-39-arm-linux-gnueabihf.so 2021-07-08T20:49:14,078 installing to build/bdist.linux-armv7l/wheel 2021-07-08T20:49:14,079 running install 2021-07-08T20:49:14,080 running install_lib 2021-07-08T20:49:14,084 creating build/bdist.linux-armv7l 2021-07-08T20:49:14,084 creating build/bdist.linux-armv7l/wheel 2021-07-08T20:49:14,086 creating build/bdist.linux-armv7l/wheel/nwalign 2021-07-08T20:49:14,087 copying build/lib.linux-armv7l-3.9/nwalign/cnwalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/nwalign 2021-07-08T20:49:14,101 copying build/lib.linux-armv7l-3.9/nwalign/cnwalign.c -> build/bdist.linux-armv7l/wheel/nwalign 2021-07-08T20:49:14,118 copying build/lib.linux-armv7l-3.9/nwalign/nwserver.py -> build/bdist.linux-armv7l/wheel/nwalign 2021-07-08T20:49:14,120 copying build/lib.linux-armv7l-3.9/nwalign/__init__.py -> build/bdist.linux-armv7l/wheel/nwalign 2021-07-08T20:49:14,122 running install_egg_info 2021-07-08T20:49:14,130 Copying nwalign.egg-info to build/bdist.linux-armv7l/wheel/nwalign-0.3.0-py3.9.egg-info 2021-07-08T20:49:14,145 running install_scripts 2021-07-08T20:49:14,256 creating build/bdist.linux-armv7l/wheel/nwalign-0.3.0.dist-info/WHEEL 2021-07-08T20:49:14,259 creating '/tmp/pip-wheel-23zlmapr/nwalign-0.3.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-08T20:49:14,263 adding 'nwalign/__init__.py' 2021-07-08T20:49:14,296 adding 'nwalign/cnwalign.c' 2021-07-08T20:49:14,383 adding 'nwalign/cnwalign.cpython-39-arm-linux-gnueabihf.so' 2021-07-08T20:49:14,388 adding 'nwalign/nwserver.py' 2021-07-08T20:49:14,390 adding 'nwalign-0.3.0.dist-info/METADATA' 2021-07-08T20:49:14,391 adding 'nwalign-0.3.0.dist-info/WHEEL' 2021-07-08T20:49:14,391 adding 'nwalign-0.3.0.dist-info/entry_points.txt' 2021-07-08T20:49:14,392 adding 'nwalign-0.3.0.dist-info/top_level.txt' 2021-07-08T20:49:14,393 adding 'nwalign-0.3.0.dist-info/RECORD' 2021-07-08T20:49:14,397 removing build/bdist.linux-armv7l/wheel 2021-07-08T20:49:14,522 Building wheel for nwalign (setup.py): finished with status 'done' 2021-07-08T20:49:14,526 Created wheel for nwalign: filename=nwalign-0.3.0-cp39-cp39-linux_armv7l.whl size=200397 sha256=c3e63a8897be9950e6899d800edda4debbc07d3d220aa516416d7f3a6bf2dd4f 2021-07-08T20:49:14,527 Stored in directory: /tmp/pip-ephem-wheel-cache-2m5nokr9/wheels/13/36/ab/e83d45eb460994cbb63cd0ae26a389bf6ebcf87b49977d0d2f 2021-07-08T20:49:14,535 Successfully built nwalign 2021-07-08T20:49:14,545 Removed build tracker: '/tmp/pip-req-tracker-xgi7mmzc'