2021-07-09T05:52:03,706 Created temporary directory: /tmp/pip-ephem-wheel-cache-up0pxhm6 2021-07-09T05:52:03,709 Created temporary directory: /tmp/pip-req-tracker-h2e98pty 2021-07-09T05:52:03,710 Initialized build tracking at /tmp/pip-req-tracker-h2e98pty 2021-07-09T05:52:03,710 Created build tracker: /tmp/pip-req-tracker-h2e98pty 2021-07-09T05:52:03,710 Entered build tracker: /tmp/pip-req-tracker-h2e98pty 2021-07-09T05:52:03,711 Created temporary directory: /tmp/pip-wheel-uapeaggn 2021-07-09T05:52:03,747 1 location(s) to search for versions of gat: 2021-07-09T05:52:03,747 * https://pypi.org/simple/gat/ 2021-07-09T05:52:03,748 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-09T05:52:03,748 Getting page https://pypi.org/simple/gat/ 2021-07-09T05:52:03,749 Found index url https://pypi.org/simple 2021-07-09T05:52:03,937 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-09T05:52:03,937 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-09T05:52:03,938 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-09T05:52:03,938 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-09T05:52:03,938 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-09T05:52:03,938 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-09T05:52:03,939 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-09T05:52:03,939 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-09T05:52:03,939 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-09T05:52:03,939 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-09T05:52:03,940 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-09T05:52:03,940 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-09T05:52:03,940 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-09T05:52:03,941 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-09T05:52:03,958 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-09T05:52:03,976 Collecting gat==0.1 2021-07-09T05:52:03,978 Created temporary directory: /tmp/pip-unpack-aiks6w_l 2021-07-09T05:52:04,166 Downloading gat-0.1.tar.gz (62 kB) 2021-07-09T05:52:04,253 Added gat==0.1 from https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f to build tracker '/tmp/pip-req-tracker-h2e98pty' 2021-07-09T05:52:04,254 Running setup.py (path:/tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab/setup.py) egg_info for package gat 2021-07-09T05:52:04,255 Created temporary directory: /tmp/pip-pip-egg-info-1l503qvm 2021-07-09T05:52:04,255 Running command python setup.py egg_info 2021-07-09T05:52:05,068 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-09T05:52:05,069 warnings.warn( 2021-07-09T05:52:05,082 running egg_info 2021-07-09T05:52:05,085 creating /tmp/pip-pip-egg-info-1l503qvm/gat.egg-info 2021-07-09T05:52:05,085 writing /tmp/pip-pip-egg-info-1l503qvm/gat.egg-info/PKG-INFO 2021-07-09T05:52:05,088 writing dependency_links to /tmp/pip-pip-egg-info-1l503qvm/gat.egg-info/dependency_links.txt 2021-07-09T05:52:05,090 writing top-level names to /tmp/pip-pip-egg-info-1l503qvm/gat.egg-info/top_level.txt 2021-07-09T05:52:05,091 writing manifest file '/tmp/pip-pip-egg-info-1l503qvm/gat.egg-info/SOURCES.txt' 2021-07-09T05:52:05,240 reading manifest file '/tmp/pip-pip-egg-info-1l503qvm/gat.egg-info/SOURCES.txt' 2021-07-09T05:52:05,241 reading manifest template 'MANIFEST.in' 2021-07-09T05:52:05,242 warning: no files found matching 'COPYING' 2021-07-09T05:52:05,243 warning: no files found matching 'INSTALL' 2021-07-09T05:52:05,243 warning: no files found matching 'KNOWN_BUGS' 2021-07-09T05:52:05,243 warning: no files found matching 'THANKS' 2021-07-09T05:52:05,244 warning: no files found matching 'distribute_setup.py' 2021-07-09T05:52:05,247 writing manifest file '/tmp/pip-pip-egg-info-1l503qvm/gat.egg-info/SOURCES.txt' 2021-07-09T05:52:05,314 Source in /tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab has version 0.1, which satisfies requirement gat==0.1 from https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f 2021-07-09T05:52:05,315 Removed gat==0.1 from https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f from build tracker '/tmp/pip-req-tracker-h2e98pty' 2021-07-09T05:52:05,319 Created temporary directory: /tmp/pip-unpack-q2dux5xn 2021-07-09T05:52:05,319 Building wheels for collected packages: gat 2021-07-09T05:52:05,324 Created temporary directory: /tmp/pip-wheel-44j5e4km 2021-07-09T05:52:05,325 Building wheel for gat (setup.py): started 2021-07-09T05:52:05,325 Destination directory: /tmp/pip-wheel-44j5e4km 2021-07-09T05:52:05,325 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-44j5e4km 2021-07-09T05:52:06,139 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-09T05:52:06,139 warnings.warn( 2021-07-09T05:52:06,171 running bdist_wheel 2021-07-09T05:52:06,176 running build 2021-07-09T05:52:06,176 running build_py 2021-07-09T05:52:06,314 creating build 2021-07-09T05:52:06,314 creating build/lib.linux-armv7l-3.9 2021-07-09T05:52:06,315 creating build/lib.linux-armv7l-3.9/gat 2021-07-09T05:52:06,316 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T05:52:06,318 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T05:52:06,320 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T05:52:06,322 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T05:52:06,325 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T05:52:06,327 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T05:52:06,330 running build_ext 2021-07-09T05:52:06,390 cythoning segmentlist/csegmentlist.pyx to segmentlist/csegmentlist.c 2021-07-09T05:52:07,016 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab/segmentlist/csegmentlist.pxd 2021-07-09T05:52:07,016 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-09T05:52:10,948 cythoning engine/cgat.pyx to engine/cgat.c 2021-07-09T05:52:10,954 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab/engine/cgat.pxd 2021-07-09T05:52:10,955 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-09T05:52:19,306 building 'csegmentlist' extension 2021-07-09T05:52:19,307 creating build/temp.linux-armv7l-3.9 2021-07-09T05:52:19,307 creating build/temp.linux-armv7l-3.9/segmentlist 2021-07-09T05:52:19,308 creating build/temp.linux-armv7l-3.9/utils 2021-07-09T05:52:19,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/lib64/python2.6/site-packages/numpy/core/include -I. -I/usr/include/python3.9 -c segmentlist/csegmentlist.c -o build/temp.linux-armv7l-3.9/segmentlist/csegmentlist.o 2021-07-09T05:52:19,706 In file included from /usr/include/python3.9/numpy/ndarraytypes.h:1822, 2021-07-09T05:52:19,706 from /usr/include/python3.9/numpy/ndarrayobject.h:12, 2021-07-09T05:52:19,706 from /usr/include/python3.9/numpy/arrayobject.h:4, 2021-07-09T05:52:19,707 from segmentlist/csegmentlist.c:619: 2021-07-09T05:52:19,707 /usr/include/python3.9/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T05:52:19,707 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T05:52:19,707 | ^~~~~~~ 2021-07-09T05:52:19,801 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_trim_ends’: 2021-07-09T05:52:19,804 segmentlist/csegmentlist.c:4521:124: warning: comparison of integer expressions of different signedness: ‘__pyx_t_12csegmentlist_Position’ {aka ‘unsigned int’} and ‘__pyx_t_12csegmentlist_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-09T05:52:19,804 4521 | if (unlikely(!((((struct __pyx_vtabstruct_12csegmentlist_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-09T05:52:19,804 | ^ 2021-07-09T05:52:19,805 segmentlist/csegmentlist.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-09T05:52:19,805 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T05:52:19,805 | ^ 2021-07-09T05:52:19,809 segmentlist/csegmentlist.c:4571:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,809 4571 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,809 | ^~ 2021-07-09T05:52:19,813 segmentlist/csegmentlist.c:4706:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,813 4706 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,813 | ^~ 2021-07-09T05:52:19,820 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList__resize’: 2021-07-09T05:52:19,823 segmentlist/csegmentlist.c:5007:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,823 5007 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-09T05:52:19,823 | ^~ 2021-07-09T05:52:19,823 segmentlist/csegmentlist.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-09T05:52:19,823 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T05:52:19,823 | ^ 2021-07-09T05:52:19,825 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_insert’: 2021-07-09T05:52:19,828 segmentlist/csegmentlist.c:5161:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-09T05:52:19,829 5161 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-09T05:52:19,829 | ^ 2021-07-09T05:52:19,835 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_trim’: 2021-07-09T05:52:19,838 segmentlist/csegmentlist.c:5422:124: warning: comparison of integer expressions of different signedness: ‘__pyx_t_12csegmentlist_Position’ {aka ‘unsigned int’} and ‘__pyx_t_12csegmentlist_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-09T05:52:19,838 5422 | if (unlikely(!((((struct __pyx_vtabstruct_12csegmentlist_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-09T05:52:19,838 | ^ 2021-07-09T05:52:19,838 segmentlist/csegmentlist.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-09T05:52:19,838 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T05:52:19,838 | ^ 2021-07-09T05:52:19,843 segmentlist/csegmentlist.c:5490:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,843 5490 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,843 | ^~ 2021-07-09T05:52:19,847 segmentlist/csegmentlist.c:5567:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_12csegmentlist_PositionDifference’ {aka ‘int’} and ‘__pyx_t_12csegmentlist_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,847 5567 | __pyx_t_9 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-09T05:52:19,848 | ^~ 2021-07-09T05:52:19,851 segmentlist/csegmentlist.c:5675:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,851 5675 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,851 | ^~ 2021-07-09T05:52:19,859 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_normalize’: 2021-07-09T05:52:19,862 segmentlist/csegmentlist.c:5959:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,862 5959 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,862 | ^ 2021-07-09T05:52:19,867 segmentlist/csegmentlist.c:5987:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,867 5987 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,867 | ^~ 2021-07-09T05:52:19,870 segmentlist/csegmentlist.c:6056:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,871 6056 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,871 | ^ 2021-07-09T05:52:19,875 segmentlist/csegmentlist.c:6133:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,876 6133 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-09T05:52:19,876 | ^ 2021-07-09T05:52:19,876 segmentlist/csegmentlist.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-09T05:52:19,876 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T05:52:19,876 | ^ 2021-07-09T05:52:19,883 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_merge’: 2021-07-09T05:52:19,886 segmentlist/csegmentlist.c:6459:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,886 6459 | __pyx_t_7 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,886 | ^ 2021-07-09T05:52:19,891 segmentlist/csegmentlist.c:6487:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,891 6487 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,891 | ^~ 2021-07-09T05:52:19,895 segmentlist/csegmentlist.c:6556:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,895 6556 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,895 | ^ 2021-07-09T05:52:19,903 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_check’: 2021-07-09T05:52:19,907 segmentlist/csegmentlist.c:6968:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,907 6968 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-09T05:52:19,907 | ^ 2021-07-09T05:52:19,912 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList__getInsertionPoint’: 2021-07-09T05:52:19,916 segmentlist/csegmentlist.c:7323:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,916 7323 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,916 | ^~ 2021-07-09T05:52:19,929 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_overlap’: 2021-07-09T05:52:19,933 segmentlist/csegmentlist.c:7960:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,934 7960 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,934 | ^~ 2021-07-09T05:52:19,938 segmentlist/csegmentlist.c:7996:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,939 7996 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,939 | ^ 2021-07-09T05:52:19,941 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_getOverlappingSegments’: 2021-07-09T05:52:19,946 segmentlist/csegmentlist.c:8088:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,946 8088 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,946 | ^~ 2021-07-09T05:52:19,951 segmentlist/csegmentlist.c:8136:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,952 8136 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,952 | ^ 2021-07-09T05:52:19,977 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_overlapWithSegments’: 2021-07-09T05:52:19,981 segmentlist/csegmentlist.c:8894:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,982 8894 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:19,982 | ^ 2021-07-09T05:52:19,986 segmentlist/csegmentlist.c:8900:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:19,986 8900 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-09T05:52:19,986 | ^ 2021-07-09T05:52:19,995 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_intersectionWithSegments’: 2021-07-09T05:52:20,000 segmentlist/csegmentlist.c:9442:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,000 9442 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:20,000 | ^ 2021-07-09T05:52:20,005 segmentlist/csegmentlist.c:9448:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,005 9448 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-09T05:52:20,005 | ^ 2021-07-09T05:52:20,012 segmentlist/csegmentlist.c:9604:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_12csegmentlist_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-09T05:52:20,012 9604 | __pyx_t_8 = (__pyx_v_other_segment.start <= __pyx_t_11); 2021-07-09T05:52:20,012 | ^~ 2021-07-09T05:52:20,016 segmentlist/csegmentlist.c:9614:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_12csegmentlist_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,017 9614 | __pyx_t_8 = (__pyx_t_11 < __pyx_v_other_segment.end); 2021-07-09T05:52:20,017 | ^ 2021-07-09T05:52:20,026 segmentlist/csegmentlist.c: In function ‘__pyx_pf_12csegmentlist_11SegmentList_30getLengthDistribution’: 2021-07-09T05:52:20,031 segmentlist/csegmentlist.c:9983:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,031 9983 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_11; __pyx_v_idx++) { 2021-07-09T05:52:20,031 | ^ 2021-07-09T05:52:20,039 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_truncate’: 2021-07-09T05:52:20,044 segmentlist/csegmentlist.c:10250:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,044 10250 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-09T05:52:20,044 | ^ 2021-07-09T05:52:20,051 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_getFilledSegmentsFromStart’: 2021-07-09T05:52:20,056 segmentlist/csegmentlist.c:10482:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_12csegmentlist_PositionDifference’ {aka ‘int’} and ‘__pyx_t_12csegmentlist_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,056 10482 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_12csegmentlist_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-09T05:52:20,056 | ^ 2021-07-09T05:52:20,064 segmentlist/csegmentlist.c:10597:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,064 10597 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:20,065 | ^~ 2021-07-09T05:52:20,072 segmentlist/csegmentlist.c:10698:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,072 10698 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:20,073 | ^~ 2021-07-09T05:52:20,083 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-09T05:52:20,089 segmentlist/csegmentlist.c:10993:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_12csegmentlist_PositionDifference’ {aka ‘int’} and ‘__pyx_t_12csegmentlist_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,089 10993 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_12csegmentlist_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-09T05:52:20,089 | ^ 2021-07-09T05:52:20,097 segmentlist/csegmentlist.c:11108:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,098 11108 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:20,098 | ^~ 2021-07-09T05:52:20,110 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_filter’: 2021-07-09T05:52:20,116 segmentlist/csegmentlist.c:11561:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,116 11561 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:20,116 | ^ 2021-07-09T05:52:20,122 segmentlist/csegmentlist.c:11567:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,122 11567 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-09T05:52:20,122 | ^ 2021-07-09T05:52:20,132 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_intersect’: 2021-07-09T05:52:20,138 segmentlist/csegmentlist.c:12176:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,138 12176 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-09T05:52:20,138 | ^ 2021-07-09T05:52:20,144 segmentlist/csegmentlist.c:12182:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,144 12182 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-09T05:52:20,144 | ^ 2021-07-09T05:52:20,153 segmentlist/csegmentlist.c:12354:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,153 12354 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-09T05:52:20,154 | ^~ 2021-07-09T05:52:20,160 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_extend_segments’: 2021-07-09T05:52:20,166 segmentlist/csegmentlist.c:12682:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,166 12682 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-09T05:52:20,166 | ^ 2021-07-09T05:52:20,173 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_expand_segments’: 2021-07-09T05:52:20,179 segmentlist/csegmentlist.c:12916:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,179 12916 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_7; __pyx_v_idx++) { 2021-07-09T05:52:20,180 | ^ 2021-07-09T05:52:20,181 segmentlist/csegmentlist.c: In function ‘__pyx_pf_12csegmentlist_11SegmentList_44shift’: 2021-07-09T05:52:20,188 segmentlist/csegmentlist.c:13107:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,188 13107 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-09T05:52:20,188 | ^ 2021-07-09T05:52:20,196 segmentlist/csegmentlist.c: In function ‘__pyx_f_12csegmentlist_11SegmentList_sum’: 2021-07-09T05:52:20,202 segmentlist/csegmentlist.c:13263:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,203 13263 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-09T05:52:20,203 | ^ 2021-07-09T05:52:20,222 segmentlist/csegmentlist.c: In function ‘__pyx_pf_12csegmentlist_11SegmentList_60asList’: 2021-07-09T05:52:20,229 segmentlist/csegmentlist.c:14098:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,230 14098 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-09T05:52:20,230 | ^ 2021-07-09T05:52:20,231 segmentlist/csegmentlist.c: In function ‘__pyx_pf_12csegmentlist_11SegmentList_62asLengths’: 2021-07-09T05:52:20,238 segmentlist/csegmentlist.c:14212:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T05:52:20,238 14212 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-09T05:52:20,238 | ^ 2021-07-09T05:52:20,329 segmentlist/csegmentlist.c: In function ‘__Pyx_modinit_type_init_code’: 2021-07-09T05:52:20,346 segmentlist/csegmentlist.c:18850:107: error: ‘PyFileObject’ undeclared (first use in this function); did you mean ‘PyCellObject’? 2021-07-09T05:52:20,346 18850 | __pyx_ptype_12csegmentlist_file = __Pyx_ImportType(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "file", sizeof(PyFileObject), __Pyx_ImportType_CheckSize_Warn); 2021-07-09T05:52:20,346 | ^~~~~~~~~~~~ 2021-07-09T05:52:20,347 | PyCellObject 2021-07-09T05:52:20,347 segmentlist/csegmentlist.c:18850:107: note: each undeclared identifier is reported only once for each function it appears in 2021-07-09T05:52:21,051 At top level: 2021-07-09T05:52:21,052 segmentlist/csegmentlist.c:2890:12: warning: ‘__pyx_f_12csegmentlist_cmpDouble’ defined but not used [-Wunused-function] 2021-07-09T05:52:21,052 2890 | static int __pyx_f_12csegmentlist_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-09T05:52:21,052 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T05:52:21,053 segmentlist/csegmentlist.c:2853:12: warning: ‘__pyx_f_12csegmentlist_cmpPosition’ defined but not used [-Wunused-function] 2021-07-09T05:52:21,054 2853 | static int __pyx_f_12csegmentlist_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-09T05:52:21,054 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T05:52:21,055 segmentlist/csegmentlist.c:2792:12: warning: ‘__pyx_f_12csegmentlist_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-09T05:52:21,055 2792 | static int __pyx_f_12csegmentlist_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-09T05:52:21,055 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T05:52:21,062 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-09T05:52:21,478 Building wheel for gat (setup.py): finished with status 'error' 2021-07-09T05:52:21,479 ERROR: Failed building wheel for gat 2021-07-09T05:52:21,480 Running setup.py clean for gat 2021-07-09T05:52:21,480 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-uapeaggn/gat_1b0255a5e3b746b695f3afdd7b029fab/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-09T05:52:22,311 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-09T05:52:22,312 warnings.warn( 2021-07-09T05:52:22,318 running clean 2021-07-09T05:52:22,319 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-09T05:52:22,322 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-09T05:52:22,325 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-09T05:52:22,325 'build/scripts-3.9' does not exist -- can't clean it 2021-07-09T05:52:22,326 removing 'build' 2021-07-09T05:52:22,385 Failed to build gat 2021-07-09T05:52:22,386 ERROR: Failed to build one or more wheels 2021-07-09T05:52:22,386 Exception information: 2021-07-09T05:52:22,386 Traceback (most recent call last): 2021-07-09T05:52:22,386 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-09T05:52:22,386 status = self.run(options, args) 2021-07-09T05:52:22,386 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-09T05:52:22,386 return func(self, options, args) 2021-07-09T05:52:22,386 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-09T05:52:22,386 raise CommandError( 2021-07-09T05:52:22,386 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-09T05:52:22,389 Removed build tracker: '/tmp/pip-req-tracker-h2e98pty'