2021-07-09T10:47:00,050 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-07-09T10:47:00,723 Created temporary directory: /tmp/pip-ephem-wheel-cache-heue2r7v
2021-07-09T10:47:00,728 Created temporary directory: /tmp/pip-req-tracker-90rb9xek
2021-07-09T10:47:00,729 Initialized build tracking at /tmp/pip-req-tracker-90rb9xek
2021-07-09T10:47:00,729 Created build tracker: /tmp/pip-req-tracker-90rb9xek
2021-07-09T10:47:00,729 Entered build tracker: /tmp/pip-req-tracker-90rb9xek
2021-07-09T10:47:00,731 Created temporary directory: /tmp/pip-wheel-fni8tp2j
2021-07-09T10:47:00,801 Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
2021-07-09T10:47:00,806 2 location(s) to search for versions of ebi-eva-common-pyutils:
2021-07-09T10:47:00,806 * https://pypi.org/simple/ebi-eva-common-pyutils/
2021-07-09T10:47:00,806 * https://pypi.ngc.nvidia.com/ebi-eva-common-pyutils/
2021-07-09T10:47:00,806 Fetching project page and analyzing links: https://pypi.org/simple/ebi-eva-common-pyutils/
2021-07-09T10:47:00,809 Getting page https://pypi.org/simple/ebi-eva-common-pyutils/
2021-07-09T10:47:00,813 Found index url https://pypi.org/simple
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2021-07-09T10:47:01,157   Found link https://files.pythonhosted.org/packages/a6/7f/22f9f9552421c60c9474d3fe05fe34cb7df2ebaa72133c188c811af298da/ebi_eva_common_pyutils-0.3.13.tar.gz#sha256=81f1cb691661e8665319dc0715afb3c066962e92646b9fbf3dfcccda0335a40e (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.13
2021-07-09T10:47:01,158   Found link https://files.pythonhosted.org/packages/76/37/2f52acfde2ae91b611f70240c06c35247d80dc3f2e4a3f4278bb6eae4d1b/ebi_eva_common_pyutils-0.3.15.tar.gz#sha256=05db4959d71eb41923ba6417d2c2f8ef07658b797edf24e9ab5982b74556e6dc (from https://pypi.org/simple/ebi-eva-common-pyutils/), version: 0.3.15
2021-07-09T10:47:01,159 Fetching project page and analyzing links: https://pypi.ngc.nvidia.com/ebi-eva-common-pyutils/
2021-07-09T10:47:01,160 Getting page https://pypi.ngc.nvidia.com/ebi-eva-common-pyutils/
2021-07-09T10:47:01,163 Found index url https://pypi.ngc.nvidia.com
2021-07-09T10:47:02,185 Could not fetch URL https://pypi.ngc.nvidia.com/ebi-eva-common-pyutils/: 404 Client Error: Not Found for url: https://developer.download.nvidia.com/compute/redist/ebi-eva-common-pyutils/ - skipping
2021-07-09T10:47:02,239 Given no hashes to check 1 links for project 'ebi-eva-common-pyutils': discarding no candidates
2021-07-09T10:47:02,273 Collecting ebi-eva-common-pyutils==0.3.15
2021-07-09T10:47:02,276   Created temporary directory: /tmp/pip-unpack-1iux1ull
2021-07-09T10:47:02,500   Downloading ebi_eva_common_pyutils-0.3.15.tar.gz (20 kB)
2021-07-09T10:47:02,728   Added ebi-eva-common-pyutils==0.3.15 from https://files.pythonhosted.org/packages/76/37/2f52acfde2ae91b611f70240c06c35247d80dc3f2e4a3f4278bb6eae4d1b/ebi_eva_common_pyutils-0.3.15.tar.gz#sha256=05db4959d71eb41923ba6417d2c2f8ef07658b797edf24e9ab5982b74556e6dc to build tracker '/tmp/pip-req-tracker-90rb9xek'
2021-07-09T10:47:02,730     Running setup.py (path:/tmp/pip-wheel-fni8tp2j/ebi-eva-common-pyutils_de9868334811460085e246cbfbcf40f0/setup.py) egg_info for package ebi-eva-common-pyutils
2021-07-09T10:47:02,732     Created temporary directory: /tmp/pip-pip-egg-info-8i93htin
2021-07-09T10:47:02,733     Running command python setup.py egg_info
2021-07-09T10:47:04,895     running egg_info
2021-07-09T10:47:04,902     creating /tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info
2021-07-09T10:47:04,905     writing /tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-07-09T10:47:04,909     writing requirements to /tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info/requires.txt
2021-07-09T10:47:04,911     writing dependency_links to /tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-07-09T10:47:04,913     writing top-level names to /tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info/top_level.txt
2021-07-09T10:47:04,918     writing manifest file '/tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-07-09T10:47:05,283     reading manifest file '/tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-07-09T10:47:05,293     writing manifest file '/tmp/pip-pip-egg-info-8i93htin/ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-07-09T10:47:05,426   Source in /tmp/pip-wheel-fni8tp2j/ebi-eva-common-pyutils_de9868334811460085e246cbfbcf40f0 has version 0.3.15, which satisfies requirement ebi-eva-common-pyutils==0.3.15 from https://files.pythonhosted.org/packages/76/37/2f52acfde2ae91b611f70240c06c35247d80dc3f2e4a3f4278bb6eae4d1b/ebi_eva_common_pyutils-0.3.15.tar.gz#sha256=05db4959d71eb41923ba6417d2c2f8ef07658b797edf24e9ab5982b74556e6dc
2021-07-09T10:47:05,428   Removed ebi-eva-common-pyutils==0.3.15 from https://files.pythonhosted.org/packages/76/37/2f52acfde2ae91b611f70240c06c35247d80dc3f2e4a3f4278bb6eae4d1b/ebi_eva_common_pyutils-0.3.15.tar.gz#sha256=05db4959d71eb41923ba6417d2c2f8ef07658b797edf24e9ab5982b74556e6dc from build tracker '/tmp/pip-req-tracker-90rb9xek'
2021-07-09T10:47:05,437 Created temporary directory: /tmp/pip-unpack-pkkaehjx
2021-07-09T10:47:05,438 Building wheels for collected packages: ebi-eva-common-pyutils
2021-07-09T10:47:05,446   Created temporary directory: /tmp/pip-wheel-x9ro0dlh
2021-07-09T10:47:05,447   Building wheel for ebi-eva-common-pyutils (setup.py): started
2021-07-09T10:47:05,447   Destination directory: /tmp/pip-wheel-x9ro0dlh
2021-07-09T10:47:05,448   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fni8tp2j/ebi-eva-common-pyutils_de9868334811460085e246cbfbcf40f0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fni8tp2j/ebi-eva-common-pyutils_de9868334811460085e246cbfbcf40f0/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x9ro0dlh
2021-07-09T10:47:07,656   running bdist_wheel
2021-07-09T10:47:07,671   running build
2021-07-09T10:47:07,672   running build_py
2021-07-09T10:47:08,016   creating build
2021-07-09T10:47:08,016   creating build/lib
2021-07-09T10:47:08,018   creating build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,021   copying ebi_eva_common_pyutils/mongo_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,025   copying ebi_eva_common_pyutils/file_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,029   copying ebi_eva_common_pyutils/config.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,034   copying ebi_eva_common_pyutils/common_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,038   copying ebi_eva_common_pyutils/metadata_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,042   copying ebi_eva_common_pyutils/command_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,046   copying ebi_eva_common_pyutils/logger.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,051   copying ebi_eva_common_pyutils/network_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,055   copying ebi_eva_common_pyutils/pg_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,060   copying ebi_eva_common_pyutils/__init__.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,063   copying ebi_eva_common_pyutils/config_utils.py -> build/lib/ebi_eva_common_pyutils
2021-07-09T10:47:08,069   creating build/lib/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,071   copying ebi_eva_common_pyutils/reference/assembly.py -> build/lib/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,077   copying ebi_eva_common_pyutils/reference/sequence.py -> build/lib/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,081   copying ebi_eva_common_pyutils/reference/__init__.py -> build/lib/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,086   creating build/lib/ebi_eva_common_pyutils/mongodb
2021-07-09T10:47:08,088   copying ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-07-09T10:47:08,094   copying ebi_eva_common_pyutils/mongodb/__init__.py -> build/lib/ebi_eva_common_pyutils/mongodb
2021-07-09T10:47:08,099   creating build/lib/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,101   copying ebi_eva_common_pyutils/variation/assembly_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,105   copying ebi_eva_common_pyutils/variation/__init__.py -> build/lib/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,108   copying ebi_eva_common_pyutils/variation/contig_utils.py -> build/lib/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,114   creating build/lib/ebi_eva_common_pyutils/taxonomy
2021-07-09T10:47:08,116   copying ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-07-09T10:47:08,120   copying ebi_eva_common_pyutils/taxonomy/__init__.py -> build/lib/ebi_eva_common_pyutils/taxonomy
2021-07-09T10:47:08,125   creating build/lib/ebi_eva_common_pyutils/assembly
2021-07-09T10:47:08,127   copying ebi_eva_common_pyutils/assembly/assembly.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-07-09T10:47:08,131   copying ebi_eva_common_pyutils/assembly/__init__.py -> build/lib/ebi_eva_common_pyutils/assembly
2021-07-09T10:47:08,136   creating build/lib/ebi_eva_common_pyutils/nextflow
2021-07-09T10:47:08,138   copying ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-07-09T10:47:08,144   copying ebi_eva_common_pyutils/nextflow/__init__.py -> build/lib/ebi_eva_common_pyutils/nextflow
2021-07-09T10:47:08,162   installing to build/bdist.linux-armv7l/wheel
2021-07-09T10:47:08,163   running install
2021-07-09T10:47:08,164   running install_lib
2021-07-09T10:47:08,172   creating build/bdist.linux-armv7l
2021-07-09T10:47:08,173   creating build/bdist.linux-armv7l/wheel
2021-07-09T10:47:08,177   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,180   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,182   copying build/lib/ebi_eva_common_pyutils/reference/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,187   copying build/lib/ebi_eva_common_pyutils/reference/sequence.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,192   copying build/lib/ebi_eva_common_pyutils/reference/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/reference
2021-07-09T10:47:08,196   copying build/lib/ebi_eva_common_pyutils/mongo_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,202   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-07-09T10:47:08,205   copying build/lib/ebi_eva_common_pyutils/mongodb/mongo_database.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-07-09T10:47:08,212   copying build/lib/ebi_eva_common_pyutils/mongodb/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/mongodb
2021-07-09T10:47:08,217   copying build/lib/ebi_eva_common_pyutils/file_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,222   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,224   copying build/lib/ebi_eva_common_pyutils/variation/assembly_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,229   copying build/lib/ebi_eva_common_pyutils/variation/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,232   copying build/lib/ebi_eva_common_pyutils/variation/contig_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/variation
2021-07-09T10:47:08,237   copying build/lib/ebi_eva_common_pyutils/config.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,242   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-07-09T10:47:08,243   copying build/lib/ebi_eva_common_pyutils/taxonomy/taxonomy.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-07-09T10:47:08,248   copying build/lib/ebi_eva_common_pyutils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/taxonomy
2021-07-09T10:47:08,251   copying build/lib/ebi_eva_common_pyutils/common_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,255   copying build/lib/ebi_eva_common_pyutils/metadata_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,259   copying build/lib/ebi_eva_common_pyutils/command_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,265   copying build/lib/ebi_eva_common_pyutils/logger.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,273   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-07-09T10:47:08,276   copying build/lib/ebi_eva_common_pyutils/assembly/assembly.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-07-09T10:47:08,281   copying build/lib/ebi_eva_common_pyutils/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/assembly
2021-07-09T10:47:08,287   copying build/lib/ebi_eva_common_pyutils/network_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,292   copying build/lib/ebi_eva_common_pyutils/pg_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,299   copying build/lib/ebi_eva_common_pyutils/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,303   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-07-09T10:47:08,305   copying build/lib/ebi_eva_common_pyutils/nextflow/nextflow_pipeline.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-07-09T10:47:08,310   copying build/lib/ebi_eva_common_pyutils/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils/nextflow
2021-07-09T10:47:08,314   copying build/lib/ebi_eva_common_pyutils/config_utils.py -> build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils
2021-07-09T10:47:08,319   running install_egg_info
2021-07-09T10:47:08,373   running egg_info
2021-07-09T10:47:08,374   writing top-level names to ebi_eva_common_pyutils.egg-info/top_level.txt
2021-07-09T10:47:08,377   writing dependency_links to ebi_eva_common_pyutils.egg-info/dependency_links.txt
2021-07-09T10:47:08,380   writing ebi_eva_common_pyutils.egg-info/PKG-INFO
2021-07-09T10:47:08,384   writing requirements to ebi_eva_common_pyutils.egg-info/requires.txt
2021-07-09T10:47:08,400   reading manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-07-09T10:47:08,413   writing manifest file 'ebi_eva_common_pyutils.egg-info/SOURCES.txt'
2021-07-09T10:47:08,416   Copying ebi_eva_common_pyutils.egg-info to build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.15-py3.5.egg-info
2021-07-09T10:47:08,439   running install_scripts
2021-07-09T10:47:08,634   creating build/bdist.linux-armv7l/wheel/ebi_eva_common_pyutils-0.3.15.dist-info/WHEEL
2021-07-09T10:47:08,945   Building wheel for ebi-eva-common-pyutils (setup.py): finished with status 'done'
2021-07-09T10:47:08,950   Created wheel for ebi-eva-common-pyutils: filename=ebi_eva_common_pyutils-0.3.15-py3-none-any.whl size=33816 sha256=dd3f19e1bd5c5e9c410b0dbcde9c5c599e8eb0413973d8443eee8063b56a30fc
2021-07-09T10:47:08,950   Stored in directory: /tmp/pip-ephem-wheel-cache-heue2r7v/wheels/b5/f7/cb/233c3dc9bcbb67b257c1aea2079b6e238c18e086582d2054bd
2021-07-09T10:47:08,970 Successfully built ebi-eva-common-pyutils
2021-07-09T10:47:08,980 Removed build tracker: '/tmp/pip-req-tracker-90rb9xek'