2021-07-09T17:51:00,278 Created temporary directory: /tmp/pip-ephem-wheel-cache-ufv6u2xg 2021-07-09T17:51:00,281 Created temporary directory: /tmp/pip-req-tracker-f665thr6 2021-07-09T17:51:00,281 Initialized build tracking at /tmp/pip-req-tracker-f665thr6 2021-07-09T17:51:00,282 Created build tracker: /tmp/pip-req-tracker-f665thr6 2021-07-09T17:51:00,282 Entered build tracker: /tmp/pip-req-tracker-f665thr6 2021-07-09T17:51:00,282 Created temporary directory: /tmp/pip-wheel-sagxap49 2021-07-09T17:51:00,318 1 location(s) to search for versions of gat: 2021-07-09T17:51:00,318 * https://pypi.org/simple/gat/ 2021-07-09T17:51:00,318 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-09T17:51:00,319 Getting page https://pypi.org/simple/gat/ 2021-07-09T17:51:00,320 Found index url https://pypi.org/simple 2021-07-09T17:51:00,427 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-09T17:51:00,428 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-09T17:51:00,428 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-09T17:51:00,429 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-09T17:51:00,430 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-09T17:51:00,430 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-09T17:51:00,431 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-09T17:51:00,432 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-09T17:51:00,432 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-09T17:51:00,433 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-09T17:51:00,433 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-09T17:51:00,434 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-09T17:51:00,434 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-09T17:51:00,435 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-09T17:51:00,460 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-09T17:51:00,486 Collecting gat==1.1 2021-07-09T17:51:00,489 Created temporary directory: /tmp/pip-unpack-h94ux9ns 2021-07-09T17:51:01,006 Downloading gat-1.1.tar.gz (420 kB) 2021-07-09T17:51:01,328 Added gat==1.1 from https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 to build tracker '/tmp/pip-req-tracker-f665thr6' 2021-07-09T17:51:01,330 Running setup.py (path:/tmp/pip-wheel-sagxap49/gat_0c2f9946baf24ed38c749fcef90baf8e/setup.py) egg_info for package gat 2021-07-09T17:51:01,331 Created temporary directory: /tmp/pip-pip-egg-info-jkk2tktl 2021-07-09T17:51:01,331 Running command python setup.py egg_info 2021-07-09T17:51:02,645 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-09T17:51:02,646 warnings.warn( 2021-07-09T17:51:02,663 running egg_info 2021-07-09T17:51:02,666 creating /tmp/pip-pip-egg-info-jkk2tktl/gat.egg-info 2021-07-09T17:51:02,668 writing /tmp/pip-pip-egg-info-jkk2tktl/gat.egg-info/PKG-INFO 2021-07-09T17:51:02,671 writing dependency_links to /tmp/pip-pip-egg-info-jkk2tktl/gat.egg-info/dependency_links.txt 2021-07-09T17:51:02,674 writing top-level names to /tmp/pip-pip-egg-info-jkk2tktl/gat.egg-info/top_level.txt 2021-07-09T17:51:02,677 writing manifest file '/tmp/pip-pip-egg-info-jkk2tktl/gat.egg-info/SOURCES.txt' 2021-07-09T17:51:02,828 reading manifest file '/tmp/pip-pip-egg-info-jkk2tktl/gat.egg-info/SOURCES.txt' 2021-07-09T17:51:02,830 reading manifest template 'MANIFEST.in' 2021-07-09T17:51:02,832 warning: no files found matching 'COPYING' 2021-07-09T17:51:02,833 warning: no files found matching 'INSTALL' 2021-07-09T17:51:02,834 warning: no files found matching 'KNOWN_BUGS' 2021-07-09T17:51:02,835 warning: no files found matching 'THANKS' 2021-07-09T17:51:02,835 warning: no files found matching 'distribute_setup.py' 2021-07-09T17:51:02,843 writing manifest file '/tmp/pip-pip-egg-info-jkk2tktl/gat.egg-info/SOURCES.txt' 2021-07-09T17:51:02,957 Source in /tmp/pip-wheel-sagxap49/gat_0c2f9946baf24ed38c749fcef90baf8e has version 1.1, which satisfies requirement gat==1.1 from https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 2021-07-09T17:51:02,958 Removed gat==1.1 from https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 from build tracker '/tmp/pip-req-tracker-f665thr6' 2021-07-09T17:51:02,963 Created temporary directory: /tmp/pip-unpack-bwpjniwf 2021-07-09T17:51:02,964 Building wheels for collected packages: gat 2021-07-09T17:51:02,968 Created temporary directory: /tmp/pip-wheel-ewmm7zu2 2021-07-09T17:51:02,969 Building wheel for gat (setup.py): started 2021-07-09T17:51:02,969 Destination directory: /tmp/pip-wheel-ewmm7zu2 2021-07-09T17:51:02,969 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-sagxap49/gat_0c2f9946baf24ed38c749fcef90baf8e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-sagxap49/gat_0c2f9946baf24ed38c749fcef90baf8e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ewmm7zu2 2021-07-09T17:51:04,220 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-09T17:51:04,221 warnings.warn( 2021-07-09T17:51:04,253 running bdist_wheel 2021-07-09T17:51:04,257 running build 2021-07-09T17:51:04,258 running build_py 2021-07-09T17:51:04,400 creating build 2021-07-09T17:51:04,401 creating build/lib.linux-armv7l-3.9 2021-07-09T17:51:04,402 creating build/lib.linux-armv7l-3.9/gat 2021-07-09T17:51:04,404 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T17:51:04,407 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T17:51:04,410 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T17:51:04,413 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T17:51:04,416 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T17:51:04,420 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-09T17:51:04,423 running build_ext 2021-07-09T17:51:04,488 skipping 'GatSegmentList/GatSegmentList.c' Cython extension (up-to-date) 2021-07-09T17:51:04,488 skipping 'GatEngine/GatEngine.c' Cython extension (up-to-date) 2021-07-09T17:51:04,489 building 'GatSegmentList' extension 2021-07-09T17:51:04,490 creating build/temp.linux-armv7l-3.9 2021-07-09T17:51:04,491 creating build/temp.linux-armv7l-3.9/GatSegmentList 2021-07-09T17:51:04,492 creating build/temp.linux-armv7l-3.9/utils 2021-07-09T17:51:04,493 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c GatSegmentList/GatSegmentList.c -o build/temp.linux-armv7l-3.9/GatSegmentList/GatSegmentList.o 2021-07-09T17:51:04,934 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-09T17:51:04,934 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T17:51:04,935 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T17:51:04,935 from GatSegmentList/GatSegmentList.c:286: 2021-07-09T17:51:04,935 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T17:51:04,935 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T17:51:04,935 | ^~~~~~~ 2021-07-09T17:51:05,038 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList___init__’: 2021-07-09T17:51:05,040 GatSegmentList/GatSegmentList.c:2812:20: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-09T17:51:05,040 2812 | __pyx_t_14 = PyString_AsString(__pyx_t_3); if (unlikely(__pyx_t_14 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-09T17:51:05,041 | ^~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,042 GatSegmentList/GatSegmentList.c:2812:18: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-09T17:51:05,043 2812 | __pyx_t_14 = PyString_AsString(__pyx_t_3); if (unlikely(__pyx_t_14 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-09T17:51:05,043 | ^ 2021-07-09T17:51:05,066 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_2__reduce__’: 2021-07-09T17:51:05,069 GatSegmentList/GatSegmentList.c:3259:17: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2021-07-09T17:51:05,070 3259 | __pyx_t_7 = PyString_FromStringAndSize(((char *)__pyx_v_self->segments), ((__pyx_v_self->nsegments * (sizeof(__pyx_t_14GatSegmentList_Position))) * 2)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 268; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-09T17:51:05,070 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,071 | PyBytes_FromStringAndSize 2021-07-09T17:51:05,073 GatSegmentList/GatSegmentList.c:3259:15: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-09T17:51:05,073 3259 | __pyx_t_7 = PyString_FromStringAndSize(((char *)__pyx_v_self->segments), ((__pyx_v_self->nsegments * (sizeof(__pyx_t_14GatSegmentList_Position))) * 2)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 268; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-09T17:51:05,074 | ^ 2021-07-09T17:51:05,122 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_trim_ends’: 2021-07-09T17:51:05,125 GatSegmentList/GatSegmentList.c:5257:123: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-09T17:51:05,126 5257 | if (unlikely(!(((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s))) { 2021-07-09T17:51:05,126 | ^ 2021-07-09T17:51:05,127 GatSegmentList/GatSegmentList.c:349:45: note: in definition of macro ‘unlikely’ 2021-07-09T17:51:05,127 349 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T17:51:05,127 | ^ 2021-07-09T17:51:05,130 GatSegmentList/GatSegmentList.c:5306:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,130 5306 | __pyx_t_6 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,131 | ^~ 2021-07-09T17:51:05,134 GatSegmentList/GatSegmentList.c:5436:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,135 5436 | __pyx_t_6 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,135 | ^~ 2021-07-09T17:51:05,143 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList__resize’: 2021-07-09T17:51:05,145 GatSegmentList/GatSegmentList.c:5718:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,146 5718 | if (unlikely(!(__pyx_v_nsegments >= __pyx_v_self->nsegments))) { 2021-07-09T17:51:05,146 | ^~ 2021-07-09T17:51:05,146 GatSegmentList/GatSegmentList.c:349:45: note: in definition of macro ‘unlikely’ 2021-07-09T17:51:05,147 349 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T17:51:05,147 | ^ 2021-07-09T17:51:05,149 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_insert’: 2021-07-09T17:51:05,153 GatSegmentList/GatSegmentList.c:5897:18: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-09T17:51:05,153 5897 | if ((__pyx_t_4 > __pyx_t_5)) { 2021-07-09T17:51:05,153 | ^ 2021-07-09T17:51:05,158 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_trim’: 2021-07-09T17:51:05,161 GatSegmentList/GatSegmentList.c:6083:123: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-09T17:51:05,162 6083 | if (unlikely(!(((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s))) { 2021-07-09T17:51:05,162 | ^ 2021-07-09T17:51:05,162 GatSegmentList/GatSegmentList.c:349:45: note: in definition of macro ‘unlikely’ 2021-07-09T17:51:05,163 349 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T17:51:05,163 | ^ 2021-07-09T17:51:05,167 GatSegmentList/GatSegmentList.c:6150:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,167 6150 | __pyx_t_5 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,168 | ^~ 2021-07-09T17:51:05,171 GatSegmentList/GatSegmentList.c:6220:30: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,172 6220 | __pyx_t_5 = (__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start); 2021-07-09T17:51:05,172 | ^~ 2021-07-09T17:51:05,175 GatSegmentList/GatSegmentList.c:6316:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,175 6316 | __pyx_t_5 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,176 | ^~ 2021-07-09T17:51:05,179 GatSegmentList/GatSegmentList.c:5983:43: warning: variable ‘__pyx_v_seg’ set but not used [-Wunused-but-set-variable] 2021-07-09T17:51:05,179 5983 | struct __pyx_t_14GatSegmentList_Segment __pyx_v_seg; 2021-07-09T17:51:05,180 | ^~~~~~~~~~~ 2021-07-09T17:51:05,189 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_normalize’: 2021-07-09T17:51:05,192 GatSegmentList/GatSegmentList.c:6556:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,192 6556 | __pyx_t_3 = (__pyx_v_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,193 | ^ 2021-07-09T17:51:05,196 GatSegmentList/GatSegmentList.c:6582:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,197 6582 | __pyx_t_5 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,197 | ^~ 2021-07-09T17:51:05,200 GatSegmentList/GatSegmentList.c:6643:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,200 6643 | __pyx_t_5 = (__pyx_v_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,201 | ^ 2021-07-09T17:51:05,205 GatSegmentList/GatSegmentList.c:6713:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,205 6713 | if (unlikely(!(__pyx_v_insertion_idx < __pyx_v_self->nsegments))) { 2021-07-09T17:51:05,206 | ^ 2021-07-09T17:51:05,206 GatSegmentList/GatSegmentList.c:349:45: note: in definition of macro ‘unlikely’ 2021-07-09T17:51:05,207 349 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-09T17:51:05,207 | ^ 2021-07-09T17:51:05,212 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_merge’: 2021-07-09T17:51:05,219 GatSegmentList/GatSegmentList.c:6996:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,219 6996 | __pyx_t_4 = (__pyx_v_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,219 | ^ 2021-07-09T17:51:05,225 GatSegmentList/GatSegmentList.c:7022:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,225 7022 | __pyx_t_6 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,225 | ^~ 2021-07-09T17:51:05,229 GatSegmentList/GatSegmentList.c:7083:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,229 7083 | __pyx_t_6 = (__pyx_v_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,229 | ^ 2021-07-09T17:51:05,238 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_check’: 2021-07-09T17:51:05,241 GatSegmentList/GatSegmentList.c:7443:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,242 7443 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-09T17:51:05,242 | ^ 2021-07-09T17:51:05,248 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList__getInsertionPoint’: 2021-07-09T17:51:05,251 GatSegmentList/GatSegmentList.c:7770:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,252 7770 | __pyx_t_1 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,252 | ^~ 2021-07-09T17:51:05,268 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_overlap’: 2021-07-09T17:51:05,272 GatSegmentList/GatSegmentList.c:8367:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,272 8367 | __pyx_t_1 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,272 | ^~ 2021-07-09T17:51:05,276 GatSegmentList/GatSegmentList.c:8404:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,277 8404 | __pyx_t_1 = (__pyx_v_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,277 | ^ 2021-07-09T17:51:05,279 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getOverlappingSegments’: 2021-07-09T17:51:05,283 GatSegmentList/GatSegmentList.c:8505:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,284 8505 | __pyx_t_1 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,284 | ^~ 2021-07-09T17:51:05,288 GatSegmentList/GatSegmentList.c:8554:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,288 8554 | __pyx_t_1 = (__pyx_v_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,288 | ^ 2021-07-09T17:51:05,316 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_overlapWithSegments’: 2021-07-09T17:51:05,320 GatSegmentList/GatSegmentList.c:9148:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,320 9148 | __pyx_t_5 = (__pyx_v_this_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,321 | ^ 2021-07-09T17:51:05,325 GatSegmentList/GatSegmentList.c:9150:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,325 9150 | __pyx_t_7 = (__pyx_v_other_idx < __pyx_v_other->nsegments); 2021-07-09T17:51:05,325 | ^ 2021-07-09T17:51:05,333 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_intersectionWithSegments’: 2021-07-09T17:51:05,338 GatSegmentList/GatSegmentList.c:9590:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,338 9590 | __pyx_t_5 = (__pyx_v_this_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,339 | ^ 2021-07-09T17:51:05,343 GatSegmentList/GatSegmentList.c:9592:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,343 9592 | __pyx_t_7 = (__pyx_v_other_idx < __pyx_v_other->nsegments); 2021-07-09T17:51:05,343 | ^ 2021-07-09T17:51:05,350 GatSegmentList/GatSegmentList.c:9721:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-09T17:51:05,350 9721 | __pyx_t_8 = (__pyx_v_other_segment.start <= __pyx_t_9); 2021-07-09T17:51:05,350 | ^~ 2021-07-09T17:51:05,355 GatSegmentList/GatSegmentList.c:9731:34: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,355 9731 | __pyx_t_8 = (__pyx_t_9 < __pyx_v_other_segment.end); 2021-07-09T17:51:05,356 | ^ 2021-07-09T17:51:05,369 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_36getLengthDistribution’: 2021-07-09T17:51:05,374 GatSegmentList/GatSegmentList.c:10170:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,375 10170 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-09T17:51:05,375 | ^ 2021-07-09T17:51:05,386 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_truncate’: 2021-07-09T17:51:05,391 GatSegmentList/GatSegmentList.c:10424:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,391 10424 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-09T17:51:05,391 | ^ 2021-07-09T17:51:05,398 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_subtract’: 2021-07-09T17:51:05,403 GatSegmentList/GatSegmentList.c:10774:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,404 10774 | __pyx_t_4 = (__pyx_v_this_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,404 | ^ 2021-07-09T17:51:05,409 GatSegmentList/GatSegmentList.c:10776:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,409 10776 | __pyx_t_6 = (__pyx_v_other_idx < __pyx_v_other->nsegments); 2021-07-09T17:51:05,410 | ^ 2021-07-09T17:51:05,417 GatSegmentList/GatSegmentList.c:10790:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,417 10790 | __pyx_t_7 = (__pyx_v_working_idx >= __pyx_v_allocated); 2021-07-09T17:51:05,418 | ^~ 2021-07-09T17:51:05,424 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_summarize’: 2021-07-09T17:51:05,430 GatSegmentList/GatSegmentList.c:11278:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,430 11278 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-09T17:51:05,430 | ^ 2021-07-09T17:51:05,437 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-09T17:51:05,443 GatSegmentList/GatSegmentList.c:11501:34: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,443 11501 | __pyx_t_5 = (__pyx_v_remainder > ((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)); 2021-07-09T17:51:05,443 | ^ 2021-07-09T17:51:05,451 GatSegmentList/GatSegmentList.c:11573:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,451 11573 | __pyx_t_5 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,452 | ^~ 2021-07-09T17:51:05,460 GatSegmentList/GatSegmentList.c:11675:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,461 11675 | __pyx_t_5 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,461 | ^~ 2021-07-09T17:51:05,474 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-09T17:51:05,480 GatSegmentList/GatSegmentList.c:11898:34: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,480 11898 | __pyx_t_5 = (__pyx_v_remainder > ((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)); 2021-07-09T17:51:05,481 | ^ 2021-07-09T17:51:05,488 GatSegmentList/GatSegmentList.c:11970:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,489 11970 | __pyx_t_5 = (__pyx_v_idx == __pyx_v_self->nsegments); 2021-07-09T17:51:05,489 | ^~ 2021-07-09T17:51:05,506 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_filter’: 2021-07-09T17:51:05,512 GatSegmentList/GatSegmentList.c:12427:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,512 12427 | __pyx_t_4 = (__pyx_v_this_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,513 | ^ 2021-07-09T17:51:05,519 GatSegmentList/GatSegmentList.c:12429:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,519 12429 | __pyx_t_6 = (__pyx_v_other_idx < __pyx_v_other->nsegments); 2021-07-09T17:51:05,519 | ^ 2021-07-09T17:51:05,530 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_intersect’: 2021-07-09T17:51:05,537 GatSegmentList/GatSegmentList.c:12997:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,537 12997 | __pyx_t_4 = (__pyx_v_this_idx < __pyx_v_self->nsegments); 2021-07-09T17:51:05,537 | ^ 2021-07-09T17:51:05,543 GatSegmentList/GatSegmentList.c:12999:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,544 12999 | __pyx_t_6 = (__pyx_v_other_idx < __pyx_v_other->nsegments); 2021-07-09T17:51:05,544 | ^ 2021-07-09T17:51:05,554 GatSegmentList/GatSegmentList.c:13145:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,554 13145 | __pyx_t_7 = (__pyx_v_working_idx >= __pyx_v_allocated); 2021-07-09T17:51:05,554 | ^~ 2021-07-09T17:51:05,564 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_extend_segments’: 2021-07-09T17:51:05,570 GatSegmentList/GatSegmentList.c:13419:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,570 13419 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-09T17:51:05,571 | ^ 2021-07-09T17:51:05,577 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_expand_segments’: 2021-07-09T17:51:05,584 GatSegmentList/GatSegmentList.c:13627:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,584 13627 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_5; __pyx_v_idx++) { 2021-07-09T17:51:05,584 | ^ 2021-07-09T17:51:05,586 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_54shift’: 2021-07-09T17:51:05,593 GatSegmentList/GatSegmentList.c:13806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,594 13806 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-09T17:51:05,594 | ^ 2021-07-09T17:51:05,598 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_sum’: 2021-07-09T17:51:05,605 GatSegmentList/GatSegmentList.c:13924:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,605 13924 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-09T17:51:05,605 | ^ 2021-07-09T17:51:05,607 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_58largest’: 2021-07-09T17:51:05,613 GatSegmentList/GatSegmentList.c:14103:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,614 14103 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-09T17:51:05,614 | ^ 2021-07-09T17:51:05,632 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_72asList’: 2021-07-09T17:51:05,639 GatSegmentList/GatSegmentList.c:14867:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,640 14867 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-09T17:51:05,640 | ^ 2021-07-09T17:51:05,641 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_74asLengths’: 2021-07-09T17:51:05,649 GatSegmentList/GatSegmentList.c:14972:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-09T17:51:05,649 14972 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-09T17:51:05,649 | ^ 2021-07-09T17:51:05,745 GatSegmentList/GatSegmentList.c: In function ‘PyInit_GatSegmentList’: 2021-07-09T17:51:05,765 GatSegmentList/GatSegmentList.c:18600:98: error: ‘PyFileObject’ undeclared (first use in this function); did you mean ‘PyCellObject’? 2021-07-09T17:51:05,766 18600 | __pyx_ptype_14GatSegmentList_file = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "file", sizeof(PyFileObject), 0); if (unlikely(!__pyx_ptype_14GatSegmentList_file)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 112; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-09T17:51:05,766 | ^~~~~~~~~~~~ 2021-07-09T17:51:05,766 | PyCellObject 2021-07-09T17:51:05,767 GatSegmentList/GatSegmentList.c:18600:98: note: each undeclared identifier is reported only once for each function it appears in 2021-07-09T17:51:05,785 GatSegmentList/GatSegmentList.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T17:51:05,796 GatSegmentList/GatSegmentList.c:18883:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,797 18883 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,797 | ^~ 2021-07-09T17:51:05,797 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,798 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,798 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,798 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,798 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,798 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,811 GatSegmentList/GatSegmentList.c:18883:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,811 18883 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,811 | ^~ 2021-07-09T17:51:05,812 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,812 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,812 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,812 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T17:51:05,812 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T17:51:05,813 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,824 GatSegmentList/GatSegmentList.c:18883:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,825 18883 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,825 | ^~ 2021-07-09T17:51:05,825 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,825 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,826 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,826 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,826 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,826 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,838 GatSegmentList/GatSegmentList.c:18883:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,838 18883 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,839 | ^~ 2021-07-09T17:51:05,839 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,839 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,839 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,840 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,840 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,840 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,851 GatSegmentList/GatSegmentList.c:18883:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,852 18883 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,852 | ^~ 2021-07-09T17:51:05,852 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,853 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,853 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,853 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T17:51:05,853 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T17:51:05,854 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,865 GatSegmentList/GatSegmentList.c:18883:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,866 18883 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,866 | ^~ 2021-07-09T17:51:05,866 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,866 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,867 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,867 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,867 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,867 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,881 GatSegmentList/GatSegmentList.c:18896:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,882 18896 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,882 | ^~ 2021-07-09T17:51:05,882 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,883 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,883 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,883 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,883 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,884 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,896 GatSegmentList/GatSegmentList.c:18896:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,896 18896 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,896 | ^~ 2021-07-09T17:51:05,897 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,897 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,897 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,897 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T17:51:05,897 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T17:51:05,898 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,909 GatSegmentList/GatSegmentList.c:18896:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,910 18896 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,910 | ^~ 2021-07-09T17:51:05,910 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,910 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,911 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,911 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,911 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,911 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,923 GatSegmentList/GatSegmentList.c:18896:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,923 18896 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,924 | ^~ 2021-07-09T17:51:05,924 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,924 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,924 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,924 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,925 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,925 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,940 GatSegmentList/GatSegmentList.c:18896:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,941 18896 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,942 | ^~ 2021-07-09T17:51:05,943 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,943 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,943 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,944 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T17:51:05,944 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T17:51:05,944 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:05,956 GatSegmentList/GatSegmentList.c:18896:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T17:51:05,956 18896 | if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && 2021-07-09T17:51:05,957 | ^~ 2021-07-09T17:51:05,957 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T17:51:05,957 from /usr/include/python3.9/Python.h:97, 2021-07-09T17:51:05,958 from GatSegmentList/GatSegmentList.c:4: 2021-07-09T17:51:05,958 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T17:51:05,958 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T17:51:05,959 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:06,452 At top level: 2021-07-09T17:51:06,462 GatSegmentList/GatSegmentList.c:16463:13: warning: ‘__pyx_pw_5numpy_7ndarray_3__releasebuffer__’ defined but not used [-Wunused-function] 2021-07-09T17:51:06,462 16463 | static void __pyx_pw_5numpy_7ndarray_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) { 2021-07-09T17:51:06,462 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:06,471 GatSegmentList/GatSegmentList.c:15647:12: warning: ‘__pyx_pw_5numpy_7ndarray_1__getbuffer__’ defined but not used [-Wunused-function] 2021-07-09T17:51:06,471 15647 | static int __pyx_pw_5numpy_7ndarray_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) { 2021-07-09T17:51:06,471 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:06,472 GatSegmentList/GatSegmentList.c:2165:12: warning: ‘__pyx_f_14GatSegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-09T17:51:06,472 2165 | static int __pyx_f_14GatSegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-09T17:51:06,472 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:06,473 GatSegmentList/GatSegmentList.c:2136:12: warning: ‘__pyx_f_14GatSegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-09T17:51:06,473 2136 | static int __pyx_f_14GatSegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-09T17:51:06,473 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:06,473 GatSegmentList/GatSegmentList.c:2081:12: warning: ‘__pyx_f_14GatSegmentList_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-09T17:51:06,474 2081 | static int __pyx_f_14GatSegmentList_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-09T17:51:06,474 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T17:51:06,474 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T17:51:06,475 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T17:51:06,475 from GatSegmentList/GatSegmentList.c:286: 2021-07-09T17:51:06,475 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T17:51:06,476 1463 | _import_array(void) 2021-07-09T17:51:06,476 | ^~~~~~~~~~~~~ 2021-07-09T17:51:06,492 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-09T17:51:06,622 Building wheel for gat (setup.py): finished with status 'error' 2021-07-09T17:51:06,622 ERROR: Failed building wheel for gat 2021-07-09T17:51:06,623 Running setup.py clean for gat 2021-07-09T17:51:06,624 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-sagxap49/gat_0c2f9946baf24ed38c749fcef90baf8e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-sagxap49/gat_0c2f9946baf24ed38c749fcef90baf8e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-09T17:51:08,046 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-09T17:51:08,047 warnings.warn( 2021-07-09T17:51:08,054 running clean 2021-07-09T17:51:08,057 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-09T17:51:08,060 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-09T17:51:08,064 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-09T17:51:08,065 'build/scripts-3.9' does not exist -- can't clean it 2021-07-09T17:51:08,066 removing 'build' 2021-07-09T17:51:08,166 Failed to build gat 2021-07-09T17:51:08,167 ERROR: Failed to build one or more wheels 2021-07-09T17:51:08,168 Exception information: 2021-07-09T17:51:08,168 Traceback (most recent call last): 2021-07-09T17:51:08,168 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-09T17:51:08,168 status = self.run(options, args) 2021-07-09T17:51:08,168 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-09T17:51:08,168 return func(self, options, args) 2021-07-09T17:51:08,168 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-09T17:51:08,168 raise CommandError( 2021-07-09T17:51:08,168 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-09T17:51:08,171 Removed build tracker: '/tmp/pip-req-tracker-f665thr6'