2021-07-09T22:03:06,464 Created temporary directory: /tmp/pip-ephem-wheel-cache-ilosnzyh
2021-07-09T22:03:06,467 Created temporary directory: /tmp/pip-req-tracker-bl25bft0
2021-07-09T22:03:06,467 Initialized build tracking at /tmp/pip-req-tracker-bl25bft0
2021-07-09T22:03:06,468 Created build tracker: /tmp/pip-req-tracker-bl25bft0
2021-07-09T22:03:06,468 Entered build tracker: /tmp/pip-req-tracker-bl25bft0
2021-07-09T22:03:06,468 Created temporary directory: /tmp/pip-wheel-59vduv5o
2021-07-09T22:03:06,502 1 location(s) to search for versions of scikit-bio:
2021-07-09T22:03:06,502 * https://pypi.org/simple/scikit-bio/
2021-07-09T22:03:06,503 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/
2021-07-09T22:03:06,503 Getting page https://pypi.org/simple/scikit-bio/
2021-07-09T22:03:06,505 Found index url https://pypi.org/simple
2021-07-09T22:03:06,605   Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz#sha256=e68193db29015e8f861b7d548f432384aa1741575028ce9a138b39ebee66e1ed (from https://pypi.org/simple/scikit-bio/), version: 0.1.0
2021-07-09T22:03:06,605   Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz#sha256=f758a5136a211cba16c8e6f1ed250f0fadb27fab436c5b7a73902dbb114618df (from https://pypi.org/simple/scikit-bio/), version: 0.1.1
2021-07-09T22:03:06,606   Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz#sha256=bdd9cb68dcc5e3ffc00fa5ae21e9e0f92f1f9c2e5a24a671596bb39d0d3e02a7 (from https://pypi.org/simple/scikit-bio/), version: 0.1.2
2021-07-09T22:03:06,606   Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz#sha256=11af62a5d8302da204c004b16bc625cc055e7322633b289353929ccc4b872e74 (from https://pypi.org/simple/scikit-bio/), version: 0.1.3
2021-07-09T22:03:06,606   Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz#sha256=466d50ced117dafe24f734eb6afd2ec0465caebe5d3e775402582ac77eecc2a8 (from https://pypi.org/simple/scikit-bio/), version: 0.1.4
2021-07-09T22:03:06,606   Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz#sha256=f136639c66f48d1e83b9799e044c49f0febefa4ead4b4fb7c88ec503147bdb03 (from https://pypi.org/simple/scikit-bio/), version: 0.1.5
2021-07-09T22:03:06,607   Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz#sha256=348687b973be55505ec7e90c40a21921533d3b5021599705922b8c730cb8c872 (from https://pypi.org/simple/scikit-bio/), version: 0.2.0
2021-07-09T22:03:06,607   Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz#sha256=adc7a3aa93ca7a3f642531e2cf64778ae243087fd6279d5354fdf157943f41cb (from https://pypi.org/simple/scikit-bio/), version: 0.2.1
2021-07-09T22:03:06,607   Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz#sha256=6c5fb4b6baec0abde209d33e86e95ff4a776f653a6c3916aa95831eafe03472a (from https://pypi.org/simple/scikit-bio/), version: 0.2.2
2021-07-09T22:03:06,608   Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz#sha256=5feec63b49249360d2bb55d0163d7066f530d163b5474a3319ec197e7e74c683 (from https://pypi.org/simple/scikit-bio/), version: 0.2.3
2021-07-09T22:03:06,608   Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz#sha256=90a3f1ffd9401d8a8f8c1ba8fdd1ea63577fb2063209440d27e8e0834322a1e3 (from https://pypi.org/simple/scikit-bio/), version: 0.4.0
2021-07-09T22:03:06,608   Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz#sha256=66e755b6c7d5b861c7eb63aeb46f4d9afe74ee0ac93c1215e0aa57003e573b0b (from https://pypi.org/simple/scikit-bio/), version: 0.4.1
2021-07-09T22:03:06,608   Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz#sha256=fe33a6cd7e6eb3fd8c088491422e499cfb36fab63c38659b587230f3dd63d91a (from https://pypi.org/simple/scikit-bio/), version: 0.4.2
2021-07-09T22:03:06,609   Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip#sha256=482194dd827b86fdf340d1576b07d70f8c62158d471d733fa3e73fe316afaa3a (from https://pypi.org/simple/scikit-bio/), version: 0.5.0
2021-07-09T22:03:06,609   Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz#sha256=2d606f0bbd50df3e5814c10260d0e1a35484ecf141e5e5c809d9c9dbf87a3655 (from https://pypi.org/simple/scikit-bio/), version: 0.5.1
2021-07-09T22:03:06,609   Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz#sha256=566c83249d2d338104d106c3a8ba36fa1afeabf10ead8e95b84605b71c65b743 (from https://pypi.org/simple/scikit-bio/), version: 0.5.2
2021-07-09T22:03:06,610   Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz#sha256=fbeebe39b0026601fa0f641fdad45abc7c2810fa75d43142f3c5473aff07ff59 (from https://pypi.org/simple/scikit-bio/), version: 0.5.3
2021-07-09T22:03:06,610   Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz#sha256=3243f1995ef24643c09ff4d9391a79528aadd8232e5aa5d66c38d7b2e0c92f24 (from https://pypi.org/simple/scikit-bio/), version: 0.5.4
2021-07-09T22:03:06,610   Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz#sha256=9fa813be66e88a994f7b7a68b8ba2216e205c525caa8585386ebdeebed6428df (from https://pypi.org/simple/scikit-bio/), version: 0.5.5
2021-07-09T22:03:06,611   Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz#sha256=48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea (from https://pypi.org/simple/scikit-bio/), version: 0.5.6
2021-07-09T22:03:06,611 Skipping link: not a file: https://pypi.org/simple/scikit-bio/
2021-07-09T22:03:06,630 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates
2021-07-09T22:03:06,647 Collecting scikit-bio==0.1.0
2021-07-09T22:03:06,649   Created temporary directory: /tmp/pip-unpack-us40jq7d
2021-07-09T22:03:06,921   Downloading scikit-bio-0.1.0.tar.gz (335 kB)
2021-07-09T22:03:07,335   Added scikit-bio==0.1.0 from https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz#sha256=e68193db29015e8f861b7d548f432384aa1741575028ce9a138b39ebee66e1ed to build tracker '/tmp/pip-req-tracker-bl25bft0'
2021-07-09T22:03:07,336     Running setup.py (path:/tmp/pip-wheel-59vduv5o/scikit-bio_2454dc1c93e64b7880208f72d0e46fa9/setup.py) egg_info for package scikit-bio
2021-07-09T22:03:07,337     Created temporary directory: /tmp/pip-pip-egg-info-g90_10q2
2021-07-09T22:03:07,337     Running command python setup.py egg_info
2021-07-09T22:03:08,468     running egg_info
2021-07-09T22:03:08,471     creating /tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info
2021-07-09T22:03:08,473     writing /tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info/PKG-INFO
2021-07-09T22:03:08,475     writing dependency_links to /tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info/dependency_links.txt
2021-07-09T22:03:08,477     writing requirements to /tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info/requires.txt
2021-07-09T22:03:08,479     writing top-level names to /tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info/top_level.txt
2021-07-09T22:03:08,480     writing manifest file '/tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info/SOURCES.txt'
2021-07-09T22:03:08,720     reading manifest file '/tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info/SOURCES.txt'
2021-07-09T22:03:08,727     writing manifest file '/tmp/pip-pip-egg-info-g90_10q2/scikit_bio.egg-info/SOURCES.txt'
2021-07-09T22:03:08,824   Source in /tmp/pip-wheel-59vduv5o/scikit-bio_2454dc1c93e64b7880208f72d0e46fa9 has version 0.1.0, which satisfies requirement scikit-bio==0.1.0 from https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz#sha256=e68193db29015e8f861b7d548f432384aa1741575028ce9a138b39ebee66e1ed
2021-07-09T22:03:08,825   Removed scikit-bio==0.1.0 from https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz#sha256=e68193db29015e8f861b7d548f432384aa1741575028ce9a138b39ebee66e1ed from build tracker '/tmp/pip-req-tracker-bl25bft0'
2021-07-09T22:03:08,829 Created temporary directory: /tmp/pip-unpack-yt4h1vmw
2021-07-09T22:03:08,830 Building wheels for collected packages: scikit-bio
2021-07-09T22:03:08,834   Created temporary directory: /tmp/pip-wheel-nfq1ur40
2021-07-09T22:03:08,834   Building wheel for scikit-bio (setup.py): started
2021-07-09T22:03:08,834   Destination directory: /tmp/pip-wheel-nfq1ur40
2021-07-09T22:03:08,835   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-59vduv5o/scikit-bio_2454dc1c93e64b7880208f72d0e46fa9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-59vduv5o/scikit-bio_2454dc1c93e64b7880208f72d0e46fa9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-nfq1ur40
2021-07-09T22:03:09,907   running bdist_wheel
2021-07-09T22:03:10,100   running build
2021-07-09T22:03:10,101   running build_py
2021-07-09T22:03:10,103   creating build
2021-07-09T22:03:10,104   creating build/lib.linux-armv7l-3.9
2021-07-09T22:03:10,105   creating build/lib.linux-armv7l-3.9/skbio
2021-07-09T22:03:10,106   copying skbio/__init__.py -> build/lib.linux-armv7l-3.9/skbio
2021-07-09T22:03:10,108   creating build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:03:10,109   copying skbio/parse/record.py -> build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:03:10,112   copying skbio/parse/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:03:10,114   copying skbio/parse/record_finder.py -> build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:03:10,117   creating build/lib.linux-armv7l-3.9/skbio/draw
2021-07-09T22:03:10,118   copying skbio/draw/__init__.py -> build/lib.linux-armv7l-3.9/skbio/draw
2021-07-09T22:03:10,120   copying skbio/draw/distributions.py -> build/lib.linux-armv7l-3.9/skbio/draw
2021-07-09T22:03:10,124   creating build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:03:10,124   copying skbio/app/util.py -> build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:03:10,128   copying skbio/app/__init__.py -> build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:03:10,130   copying skbio/app/parameters.py -> build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:03:10,133   creating build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,134   copying skbio/core/warning.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,136   copying skbio/core/exception.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,139   copying skbio/core/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,141   copying skbio/core/sequence.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,144   copying skbio/core/alignment.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,149   copying skbio/core/genetic_code.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,152   copying skbio/core/workflow.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,155   copying skbio/core/distance.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:10,158   creating build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:03:10,159   copying skbio/util/misc.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:03:10,162   copying skbio/util/testing.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:03:10,164   copying skbio/util/__init__.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:03:10,166   copying skbio/util/io.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:03:10,168   copying skbio/util/sort.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:03:10,171   creating build/lib.linux-armv7l-3.9/skbio/format
2021-07-09T22:03:10,172   copying skbio/format/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format
2021-07-09T22:03:10,175   creating build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:03:10,176   copying skbio/math/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:03:10,178   copying skbio/math/gradient.py -> build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:03:10,182   copying skbio/math/subsample.py -> build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:03:10,185   creating build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:03:10,186   copying skbio/parse/sequences/factory.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:03:10,189   copying skbio/parse/sequences/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:03:10,192   copying skbio/parse/sequences/fastq.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:03:10,195   copying skbio/parse/sequences/clustal.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:03:10,197   copying skbio/parse/sequences/iterator.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:03:10,200   copying skbio/parse/sequences/fasta.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:03:10,203   creating build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:03:10,204   copying skbio/parse/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:03:10,206   copying skbio/parse/tests/test_record.py -> build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:03:10,209   copying skbio/parse/tests/test_record_finder.py -> build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:03:10,213   creating build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:03:10,214   copying skbio/parse/sequences/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:03:10,216   copying skbio/parse/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:03:10,219   copying skbio/parse/sequences/tests/test_factory.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:03:10,222   copying skbio/parse/sequences/tests/test_iterator.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:03:10,225   copying skbio/parse/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:03:10,227   copying skbio/parse/sequences/tests/test_clustal.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:03:10,230   creating build/lib.linux-armv7l-3.9/skbio/draw/tests
2021-07-09T22:03:10,232   copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/draw/tests
2021-07-09T22:03:10,234   copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-3.9/skbio/draw/tests
2021-07-09T22:03:10,238   creating build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:03:10,238   copying skbio/app/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:03:10,241   copying skbio/app/tests/test_parameters.py -> build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:03:10,244   copying skbio/app/tests/test_util.py -> build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:03:10,248   creating build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:03:10,249   copying skbio/core/tree/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:03:10,252   copying skbio/core/tree/trie.py -> build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:03:10,254   copying skbio/core/tree/tree.py -> build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:03:10,260   creating build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:03:10,261   copying skbio/core/tests/test_distance.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:03:10,264   copying skbio/core/tests/test_genetic_code.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:03:10,267   copying skbio/core/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:03:10,269   copying skbio/core/tests/test_sequence.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:03:10,272   copying skbio/core/tests/test_workflow.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:03:10,275   copying skbio/core/tests/test_alignment.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:03:10,279   creating build/lib.linux-armv7l-3.9/skbio/core/ssw
2021-07-09T22:03:10,280   copying skbio/core/ssw/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/ssw
2021-07-09T22:03:10,283   creating build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:03:10,284   copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:03:10,287   copying skbio/util/tests/test_io.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:03:10,289   copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:03:10,292   copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:03:10,294   copying skbio/util/tests/test_sort.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:03:10,297   creating build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:03:10,298   copying skbio/format/sequences/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:03:10,300   copying skbio/format/sequences/fastq.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:03:10,302   copying skbio/format/sequences/fasta.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:03:10,305   creating build/lib.linux-armv7l-3.9/skbio/format/tests
2021-07-09T22:03:10,306   copying skbio/format/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format/tests
2021-07-09T22:03:10,309   creating build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:03:10,310   copying skbio/format/sequences/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:03:10,312   copying skbio/format/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:03:10,314   copying skbio/format/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:03:10,317   creating build/lib.linux-armv7l-3.9/skbio/math/diversity
2021-07-09T22:03:10,318   copying skbio/math/diversity/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity
2021-07-09T22:03:10,321   creating build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:03:10,322   copying skbio/math/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:03:10,324   copying skbio/math/tests/test_subsample.py -> build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:03:10,326   copying skbio/math/tests/test_gradient.py -> build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:03:10,331   creating build/lib.linux-armv7l-3.9/skbio/math/stats
2021-07-09T22:03:10,332   copying skbio/math/stats/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats
2021-07-09T22:03:10,334   copying skbio/math/stats/spatial.py -> build/lib.linux-armv7l-3.9/skbio/math/stats
2021-07-09T22:03:10,337   creating build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:03:10,338   copying skbio/math/diversity/alpha/gini.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:03:10,340   copying skbio/math/diversity/alpha/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:03:10,343   copying skbio/math/diversity/alpha/chao1.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:03:10,345   copying skbio/math/diversity/alpha/lladser.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:03:10,348   copying skbio/math/diversity/alpha/base.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:03:10,351   copying skbio/math/diversity/alpha/ace.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:03:10,354   creating build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:03:10,355   copying skbio/math/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:03:10,357   copying skbio/math/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:03:10,360   copying skbio/math/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:03:10,362   copying skbio/math/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:03:10,364   copying skbio/math/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:03:10,366   copying skbio/math/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:03:10,370   creating build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,371   copying skbio/math/stats/ordination/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,373   copying skbio/math/stats/ordination/principal_coordinate_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,375   copying skbio/math/stats/ordination/redundancy_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,378   copying skbio/math/stats/ordination/base.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,381   copying skbio/math/stats/ordination/canonical_correspondence_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,383   copying skbio/math/stats/ordination/correspondence_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,386   copying skbio/math/stats/ordination/utils.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:03:10,389   creating build/lib.linux-armv7l-3.9/skbio/math/stats/tests
2021-07-09T22:03:10,390   copying skbio/math/stats/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/tests
2021-07-09T22:03:10,392   copying skbio/math/stats/tests/test_spatial.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/tests
2021-07-09T22:03:10,395   creating build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:03:10,396   copying skbio/math/stats/distance/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:03:10,398   copying skbio/math/stats/distance/permanova.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:03:10,400   copying skbio/math/stats/distance/base.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:03:10,402   copying skbio/math/stats/distance/anosim.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:03:10,405   creating build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests
2021-07-09T22:03:10,406   copying skbio/math/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests
2021-07-09T22:03:10,408   copying skbio/math/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests
2021-07-09T22:03:10,412   creating build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:03:10,413   copying skbio/math/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:03:10,415   copying skbio/math/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:03:10,417   copying skbio/math/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:03:10,420   copying skbio/math/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:03:10,443   running build_ext
2021-07-09T22:03:10,450   building 'skbio.math._subsample' extension
2021-07-09T22:03:10,450   creating build/temp.linux-armv7l-3.9
2021-07-09T22:03:10,451   creating build/temp.linux-armv7l-3.9/skbio
2021-07-09T22:03:10,452   creating build/temp.linux-armv7l-3.9/skbio/math
2021-07-09T22:03:10,452   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c skbio/math/_subsample.c -o build/temp.linux-armv7l-3.9/skbio/math/_subsample.o
2021-07-09T22:03:10,859   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-09T22:03:10,860                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-09T22:03:10,860                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-09T22:03:10,860                    from skbio/math/_subsample.c:346:
2021-07-09T22:03:10,860   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-09T22:03:10,860      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-09T22:03:10,860         |  ^~~~~~~
2021-07-09T22:03:10,946   skbio/math/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-09T22:03:10,948   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,948    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,948         |                     ^
2021-07-09T22:03:10,948   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,949                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,949                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,949   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,949     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,949         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,951   skbio/math/_subsample.c:4145:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,951    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,951         |                     ^
2021-07-09T22:03:10,951   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,951                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,951                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,952   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:03:10,952     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:03:10,952         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,953   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,953    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,953         |                     ^
2021-07-09T22:03:10,953   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,954                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,954                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,954   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,954     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,954         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,955   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,955    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,956         |                     ^
2021-07-09T22:03:10,956   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,956                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,956                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,956   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,956     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,956         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,958   skbio/math/_subsample.c:4145:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,958    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,958         |                     ^
2021-07-09T22:03:10,958   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,958                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,958                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,958   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:03:10,958     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:03:10,958         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,960   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,960    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,960         |                     ^
2021-07-09T22:03:10,960   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,960                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,961                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,961   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,961     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,961         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,963   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,963    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,963         |                         ^
2021-07-09T22:03:10,963   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,964                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,964                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,964   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,964     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,964         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,965   skbio/math/_subsample.c:4161:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,965    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,965         |                         ^
2021-07-09T22:03:10,966   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,966                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,966                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,966   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:03:10,966     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:03:10,966         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,967   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,968    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,968         |                         ^
2021-07-09T22:03:10,968   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,968                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,968                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,968   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,968     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,968         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,970   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,970    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,970         |                         ^
2021-07-09T22:03:10,970   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,970                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,970                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,970   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,971     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,971         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,972   skbio/math/_subsample.c:4161:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,972    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,972         |                         ^
2021-07-09T22:03:10,972   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,972                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,973                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,973   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:03:10,973     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:03:10,973         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:10,974   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:03:10,974    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:03:10,975         |                         ^
2021-07-09T22:03:10,975   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:03:10,975                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:03:10,975                    from skbio/math/_subsample.c:16:
2021-07-09T22:03:10,975   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:03:10,975     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:03:10,975         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:03:11,091   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2021-07-09T22:03:11,091                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-09T22:03:11,091                    from skbio/math/_subsample.c:346:
2021-07-09T22:03:11,091   At top level:
2021-07-09T22:03:11,091   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2021-07-09T22:03:11,092    1464 | _import_array(void)
2021-07-09T22:03:11,092         | ^~~~~~~~~~~~~
2021-07-09T22:03:12,974   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/skbio/math/_subsample.o -o build/lib.linux-armv7l-3.9/skbio/math/_subsample.cpython-39-arm-linux-gnueabihf.so
2021-07-09T22:03:13,096   building 'skbio.core.ssw.ssw_wrapper' extension
2021-07-09T22:03:13,097   creating build/temp.linux-armv7l-3.9/skbio/core
2021-07-09T22:03:13,097   creating build/temp.linux-armv7l-3.9/skbio/core/ssw
2021-07-09T22:03:13,098   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c skbio/core/ssw/ssw.c -o build/temp.linux-armv7l-3.9/skbio/core/ssw/ssw.o
2021-07-09T22:03:13,153   skbio/core/ssw/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2021-07-09T22:03:13,154      38 | #include <emmintrin.h>
2021-07-09T22:03:13,154         |          ^~~~~~~~~~~~~
2021-07-09T22:03:13,154   compilation terminated.
2021-07-09T22:03:13,157   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-09T22:03:13,265   Building wheel for scikit-bio (setup.py): finished with status 'error'
2021-07-09T22:03:13,266   ERROR: Failed building wheel for scikit-bio
2021-07-09T22:03:13,267   Running setup.py clean for scikit-bio
2021-07-09T22:03:13,267   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-59vduv5o/scikit-bio_2454dc1c93e64b7880208f72d0e46fa9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-59vduv5o/scikit-bio_2454dc1c93e64b7880208f72d0e46fa9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-09T22:03:14,310   running clean
2021-07-09T22:03:14,312   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-09T22:03:14,316   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-09T22:03:14,373   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-09T22:03:14,373   'build/scripts-3.9' does not exist -- can't clean it
2021-07-09T22:03:14,373   removing 'build'
2021-07-09T22:03:14,459 Failed to build scikit-bio
2021-07-09T22:03:14,459 ERROR: Failed to build one or more wheels
2021-07-09T22:03:14,460 Exception information:
2021-07-09T22:03:14,460 Traceback (most recent call last):
2021-07-09T22:03:14,460   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-09T22:03:14,460     status = self.run(options, args)
2021-07-09T22:03:14,460   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-09T22:03:14,460     return func(self, options, args)
2021-07-09T22:03:14,460   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-09T22:03:14,460     raise CommandError(
2021-07-09T22:03:14,460 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-09T22:03:14,463 Removed build tracker: '/tmp/pip-req-tracker-bl25bft0'