2021-07-09T22:03:04,834 Created temporary directory: /tmp/pip-ephem-wheel-cache-grst35p4 2021-07-09T22:03:04,837 Created temporary directory: /tmp/pip-req-tracker-5hy2qgvg 2021-07-09T22:03:04,837 Initialized build tracking at /tmp/pip-req-tracker-5hy2qgvg 2021-07-09T22:03:04,837 Created build tracker: /tmp/pip-req-tracker-5hy2qgvg 2021-07-09T22:03:04,837 Entered build tracker: /tmp/pip-req-tracker-5hy2qgvg 2021-07-09T22:03:04,838 Created temporary directory: /tmp/pip-wheel-3ir528t5 2021-07-09T22:03:04,872 1 location(s) to search for versions of biom-format: 2021-07-09T22:03:04,872 * https://pypi.org/simple/biom-format/ 2021-07-09T22:03:04,872 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-09T22:03:04,873 Getting page https://pypi.org/simple/biom-format/ 2021-07-09T22:03:04,874 Found index url https://pypi.org/simple 2021-07-09T22:03:05,060 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-09T22:03:05,060 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-09T22:03:05,061 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-09T22:03:05,061 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-09T22:03:05,061 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-09T22:03:05,062 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-09T22:03:05,062 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-09T22:03:05,062 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-09T22:03:05,063 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-09T22:03:05,063 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-09T22:03:05,063 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-09T22:03:05,063 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-09T22:03:05,079 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-09T22:03:05,080 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-09T22:03:05,080 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-09T22:03:05,080 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-09T22:03:05,081 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-09T22:03:05,081 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-09T22:03:05,081 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-09T22:03:05,084 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-09T22:03:05,102 Collecting biom-format==2.0.0 2021-07-09T22:03:05,104 Created temporary directory: /tmp/pip-unpack-u_76qszq 2021-07-09T22:03:05,558 Downloading biom-format-2.0.0.tar.gz (831 kB) 2021-07-09T22:03:06,815 Added biom-format==2.0.0 from https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c to build tracker '/tmp/pip-req-tracker-5hy2qgvg' 2021-07-09T22:03:06,816 Running setup.py (path:/tmp/pip-wheel-3ir528t5/biom-format_9fab65f0b8554ad5bfe0015e0dc19bed/setup.py) egg_info for package biom-format 2021-07-09T22:03:06,817 Created temporary directory: /tmp/pip-pip-egg-info-f_iu4fyx 2021-07-09T22:03:06,817 Running command python setup.py egg_info 2021-07-09T22:03:07,866 running egg_info 2021-07-09T22:03:07,869 creating /tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info 2021-07-09T22:03:07,869 writing /tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info/PKG-INFO 2021-07-09T22:03:07,871 writing dependency_links to /tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info/dependency_links.txt 2021-07-09T22:03:07,873 writing requirements to /tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info/requires.txt 2021-07-09T22:03:07,874 writing top-level names to /tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info/top_level.txt 2021-07-09T22:03:07,876 writing manifest file '/tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info/SOURCES.txt' 2021-07-09T22:03:08,231 reading manifest file '/tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info/SOURCES.txt' 2021-07-09T22:03:08,232 reading manifest template 'MANIFEST.in' 2021-07-09T22:03:08,280 no previously-included directories found matching 'docs/_build' 2021-07-09T22:03:08,282 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-09T22:03:08,284 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-09T22:03:08,285 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-09T22:03:08,286 adding license file 'COPYING.txt' 2021-07-09T22:03:08,307 writing manifest file '/tmp/pip-pip-egg-info-f_iu4fyx/biom_format.egg-info/SOURCES.txt' 2021-07-09T22:03:08,412 Source in /tmp/pip-wheel-3ir528t5/biom-format_9fab65f0b8554ad5bfe0015e0dc19bed has version 2.0.0, which satisfies requirement biom-format==2.0.0 from https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c 2021-07-09T22:03:08,413 Removed biom-format==2.0.0 from https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c from build tracker '/tmp/pip-req-tracker-5hy2qgvg' 2021-07-09T22:03:08,416 Created temporary directory: /tmp/pip-unpack-75kn9s7a 2021-07-09T22:03:08,417 Building wheels for collected packages: biom-format 2021-07-09T22:03:08,420 Created temporary directory: /tmp/pip-wheel-86x53hs3 2021-07-09T22:03:08,421 Building wheel for biom-format (setup.py): started 2021-07-09T22:03:08,421 Destination directory: /tmp/pip-wheel-86x53hs3 2021-07-09T22:03:08,421 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3ir528t5/biom-format_9fab65f0b8554ad5bfe0015e0dc19bed/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3ir528t5/biom-format_9fab65f0b8554ad5bfe0015e0dc19bed/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-86x53hs3 2021-07-09T22:03:09,455 running bdist_wheel 2021-07-09T22:03:09,646 running build 2021-07-09T22:03:09,646 running build_py 2021-07-09T22:03:09,782 creating build 2021-07-09T22:03:09,782 creating build/lib.linux-armv7l-3.9 2021-07-09T22:03:09,783 creating build/lib.linux-armv7l-3.9/biom 2021-07-09T22:03:09,784 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:03:09,790 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:03:09,793 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:03:09,794 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:03:09,797 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:03:09,800 creating build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,801 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,803 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,806 copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,808 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,810 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,813 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,815 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:03:09,818 creating build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-09T22:03:09,819 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-09T22:03:09,821 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:03:09,822 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:03:09,824 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:03:09,827 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:03:09,830 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,831 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,833 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,835 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,837 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,839 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,842 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,844 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:03:09,846 creating build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:03:09,847 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:03:09,849 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:03:09,851 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:03:09,853 creating build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:03:09,854 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:03:09,856 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:03:09,858 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:03:09,860 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:03:09,862 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:03:09,864 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:03:09,871 running build_ext 2021-07-09T22:03:09,877 building 'biom._filter' extension 2021-07-09T22:03:09,878 creating build/temp.linux-armv7l-3.9 2021-07-09T22:03:09,878 creating build/temp.linux-armv7l-3.9/biom 2021-07-09T22:03:09,879 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-09T22:03:10,284 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T22:03:10,284 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T22:03:10,284 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:03:10,284 from biom/_filter.c:346: 2021-07-09T22:03:10,284 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T22:03:10,284 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T22:03:10,285 | ^~~~~~~ 2021-07-09T22:03:10,478 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T22:03:10,481 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,481 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,481 | ^ 2021-07-09T22:03:10,482 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,482 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,482 from biom/_filter.c:16: 2021-07-09T22:03:10,482 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,482 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,482 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,486 biom/_filter.c:7188:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,486 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,486 | ^ 2021-07-09T22:03:10,487 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,487 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,487 from biom/_filter.c:16: 2021-07-09T22:03:10,487 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:10,487 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:10,487 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,490 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,490 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,491 | ^ 2021-07-09T22:03:10,491 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,491 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,491 from biom/_filter.c:16: 2021-07-09T22:03:10,491 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,491 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,491 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,495 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,495 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,495 | ^ 2021-07-09T22:03:10,495 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,495 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,495 from biom/_filter.c:16: 2021-07-09T22:03:10,495 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,495 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,496 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,499 biom/_filter.c:7188:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,499 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,499 | ^ 2021-07-09T22:03:10,499 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,499 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,499 from biom/_filter.c:16: 2021-07-09T22:03:10,500 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:10,500 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:10,500 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,503 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,503 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,503 | ^ 2021-07-09T22:03:10,503 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,504 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,504 from biom/_filter.c:16: 2021-07-09T22:03:10,504 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,504 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,504 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,509 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,509 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,509 | ^ 2021-07-09T22:03:10,509 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,509 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,509 from biom/_filter.c:16: 2021-07-09T22:03:10,509 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,509 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,510 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,513 biom/_filter.c:7204:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,513 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,513 | ^ 2021-07-09T22:03:10,513 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,513 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,513 from biom/_filter.c:16: 2021-07-09T22:03:10,513 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:10,514 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:10,514 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,517 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,517 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,517 | ^ 2021-07-09T22:03:10,517 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,518 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,518 from biom/_filter.c:16: 2021-07-09T22:03:10,518 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,518 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,518 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,521 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,521 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,522 | ^ 2021-07-09T22:03:10,522 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,522 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,522 from biom/_filter.c:16: 2021-07-09T22:03:10,522 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,522 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,522 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,525 biom/_filter.c:7204:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,526 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,526 | ^ 2021-07-09T22:03:10,526 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,526 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,526 from biom/_filter.c:16: 2021-07-09T22:03:10,526 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:10,526 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:10,526 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,530 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:10,530 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:10,530 | ^ 2021-07-09T22:03:10,530 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:10,530 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:10,531 from biom/_filter.c:16: 2021-07-09T22:03:10,531 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:10,531 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:10,531 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:10,667 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T22:03:10,667 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:03:10,667 from biom/_filter.c:346: 2021-07-09T22:03:10,667 At top level: 2021-07-09T22:03:10,667 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T22:03:10,668 1464 | _import_array(void) 2021-07-09T22:03:10,668 | ^~~~~~~~~~~~~ 2021-07-09T22:03:16,533 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-09T22:03:16,669 building 'biom._transform' extension 2021-07-09T22:03:16,669 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-09T22:03:17,038 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T22:03:17,038 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T22:03:17,038 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:03:17,038 from biom/_transform.c:346: 2021-07-09T22:03:17,038 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T22:03:17,039 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T22:03:17,039 | ^~~~~~~ 2021-07-09T22:03:17,116 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T22:03:17,118 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,118 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,119 | ^ 2021-07-09T22:03:17,119 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,119 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,119 from biom/_transform.c:16: 2021-07-09T22:03:17,119 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,119 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,119 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,121 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,121 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,121 | ^ 2021-07-09T22:03:17,121 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,121 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,122 from biom/_transform.c:16: 2021-07-09T22:03:17,122 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:17,122 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:17,122 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,123 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,123 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,123 | ^ 2021-07-09T22:03:17,124 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,124 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,124 from biom/_transform.c:16: 2021-07-09T22:03:17,124 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,124 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,124 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,125 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,126 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,126 | ^ 2021-07-09T22:03:17,126 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,126 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,126 from biom/_transform.c:16: 2021-07-09T22:03:17,126 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,126 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,126 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,128 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,128 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,128 | ^ 2021-07-09T22:03:17,128 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,128 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,129 from biom/_transform.c:16: 2021-07-09T22:03:17,129 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:17,129 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:17,129 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,130 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,130 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,130 | ^ 2021-07-09T22:03:17,131 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,131 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,131 from biom/_transform.c:16: 2021-07-09T22:03:17,131 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,131 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,131 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,133 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,133 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,133 | ^ 2021-07-09T22:03:17,134 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,134 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,134 from biom/_transform.c:16: 2021-07-09T22:03:17,134 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,134 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,134 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,135 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,135 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,135 | ^ 2021-07-09T22:03:17,136 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,136 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,136 from biom/_transform.c:16: 2021-07-09T22:03:17,136 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:17,136 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:17,136 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,137 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,138 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,138 | ^ 2021-07-09T22:03:17,138 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,138 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,138 from biom/_transform.c:16: 2021-07-09T22:03:17,138 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,138 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,138 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,140 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,140 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,140 | ^ 2021-07-09T22:03:17,140 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,140 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,140 from biom/_transform.c:16: 2021-07-09T22:03:17,140 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,140 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,141 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,142 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,142 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,142 | ^ 2021-07-09T22:03:17,142 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,142 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,142 from biom/_transform.c:16: 2021-07-09T22:03:17,143 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:17,143 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:17,143 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,144 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:17,144 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:17,144 | ^ 2021-07-09T22:03:17,144 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:17,145 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:17,145 from biom/_transform.c:16: 2021-07-09T22:03:17,145 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:17,145 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:17,145 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:17,258 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T22:03:17,258 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:03:17,258 from biom/_transform.c:346: 2021-07-09T22:03:17,258 At top level: 2021-07-09T22:03:17,259 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T22:03:17,259 1464 | _import_array(void) 2021-07-09T22:03:17,259 | ^~~~~~~~~~~~~ 2021-07-09T22:03:18,926 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-09T22:03:19,040 building 'biom._subsample' extension 2021-07-09T22:03:19,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-09T22:03:19,412 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T22:03:19,412 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T22:03:19,413 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:03:19,413 from biom/_subsample.c:346: 2021-07-09T22:03:19,413 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T22:03:19,413 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T22:03:19,413 | ^~~~~~~ 2021-07-09T22:03:19,501 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T22:03:19,503 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,504 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,504 | ^ 2021-07-09T22:03:19,504 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,504 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,504 from biom/_subsample.c:16: 2021-07-09T22:03:19,504 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,504 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,505 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,506 biom/_subsample.c:4415:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,507 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,507 | ^ 2021-07-09T22:03:19,507 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,507 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,507 from biom/_subsample.c:16: 2021-07-09T22:03:19,507 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:19,507 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:19,507 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,509 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,509 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,509 | ^ 2021-07-09T22:03:19,509 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,509 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,509 from biom/_subsample.c:16: 2021-07-09T22:03:19,510 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,510 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,510 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,511 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,511 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,512 | ^ 2021-07-09T22:03:19,512 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,512 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,512 from biom/_subsample.c:16: 2021-07-09T22:03:19,512 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,512 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,512 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,514 biom/_subsample.c:4415:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,514 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,514 | ^ 2021-07-09T22:03:19,514 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,514 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,514 from biom/_subsample.c:16: 2021-07-09T22:03:19,514 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:19,515 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:19,515 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,516 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,516 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,517 | ^ 2021-07-09T22:03:19,517 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,517 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,517 from biom/_subsample.c:16: 2021-07-09T22:03:19,517 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,517 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,517 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,519 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,520 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,520 | ^ 2021-07-09T22:03:19,520 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,520 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,520 from biom/_subsample.c:16: 2021-07-09T22:03:19,520 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,520 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,520 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,522 biom/_subsample.c:4431:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,522 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,522 | ^ 2021-07-09T22:03:19,522 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,522 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,522 from biom/_subsample.c:16: 2021-07-09T22:03:19,523 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:19,523 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:19,523 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,524 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,524 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,525 | ^ 2021-07-09T22:03:19,525 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,525 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,525 from biom/_subsample.c:16: 2021-07-09T22:03:19,525 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,525 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,525 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,527 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,527 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,527 | ^ 2021-07-09T22:03:19,527 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,527 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,527 from biom/_subsample.c:16: 2021-07-09T22:03:19,528 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,528 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,528 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,529 biom/_subsample.c:4431:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,529 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,529 | ^ 2021-07-09T22:03:19,530 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,530 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,530 from biom/_subsample.c:16: 2021-07-09T22:03:19,530 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:03:19,530 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:03:19,530 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,532 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:03:19,532 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:03:19,532 | ^ 2021-07-09T22:03:19,532 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:03:19,532 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:03:19,532 from biom/_subsample.c:16: 2021-07-09T22:03:19,533 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:03:19,533 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:03:19,533 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:03:19,669 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T22:03:19,669 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:03:19,669 from biom/_subsample.c:346: 2021-07-09T22:03:19,669 At top level: 2021-07-09T22:03:19,670 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T22:03:19,670 1464 | _import_array(void) 2021-07-09T22:03:19,671 | ^~~~~~~~~~~~~ 2021-07-09T22:03:22,772 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-09T22:03:22,891 running build_scripts 2021-07-09T22:03:22,892 creating build/scripts-3.9 2021-07-09T22:03:22,893 copying and adjusting scripts/subset_biom.py -> build/scripts-3.9 2021-07-09T22:03:22,894 copying and adjusting scripts/convert_biom.py -> build/scripts-3.9 2021-07-09T22:03:22,896 copying and adjusting scripts/biom_validator.py -> build/scripts-3.9 2021-07-09T22:03:22,897 copying scripts/biom -> build/scripts-3.9 2021-07-09T22:03:22,899 copying scripts/serve-biom -> build/scripts-3.9 2021-07-09T22:03:22,901 copying and adjusting scripts/print_biom_table_summary.py -> build/scripts-3.9 2021-07-09T22:03:22,902 copying and adjusting scripts/add_metadata.py -> build/scripts-3.9 2021-07-09T22:03:22,904 copying and adjusting scripts/print_biom_python_config.py -> build/scripts-3.9 2021-07-09T22:03:22,904 changing mode of build/scripts-3.9/subset_biom.py from 644 to 755 2021-07-09T22:03:22,905 changing mode of build/scripts-3.9/convert_biom.py from 644 to 755 2021-07-09T22:03:22,905 changing mode of build/scripts-3.9/biom_validator.py from 644 to 755 2021-07-09T22:03:22,905 changing mode of build/scripts-3.9/serve-biom from 644 to 755 2021-07-09T22:03:22,905 changing mode of build/scripts-3.9/print_biom_table_summary.py from 644 to 755 2021-07-09T22:03:22,906 changing mode of build/scripts-3.9/add_metadata.py from 644 to 755 2021-07-09T22:03:22,906 changing mode of build/scripts-3.9/print_biom_python_config.py from 644 to 755 2021-07-09T22:03:22,914 installing to build/bdist.linux-armv7l/wheel 2021-07-09T22:03:22,914 running install 2021-07-09T22:03:22,916 running install_lib 2021-07-09T22:03:22,920 creating build/bdist.linux-armv7l 2021-07-09T22:03:22,920 creating build/bdist.linux-armv7l/wheel 2021-07-09T22:03:22,923 creating build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:22,924 creating build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-09T22:03:22,926 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:03:22,927 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:03:22,930 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:03:22,932 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:03:22,934 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,935 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,937 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/subset_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,939 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,941 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,942 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,945 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,947 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:03:22,949 copying build/lib.linux-armv7l-3.9/biom/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-09T22:03:22,951 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:03:22,952 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:03:22,954 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:03:22,956 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:03:22,959 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:03:22,959 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:03:22,962 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:03:22,964 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:03:22,966 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:03:22,968 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:03:22,970 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:03:22,972 copying build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:22,979 copying build/lib.linux-armv7l-3.9/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:22,986 copying build/lib.linux-armv7l-3.9/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:22,988 copying build/lib.linux-armv7l-3.9/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:22,991 creating build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:22,992 copying build/lib.linux-armv7l-3.9/biom/commands/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:22,994 copying build/lib.linux-armv7l-3.9/biom/commands/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:22,997 copying build/lib.linux-armv7l-3.9/biom/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:22,998 copying build/lib.linux-armv7l-3.9/biom/commands/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:23,001 copying build/lib.linux-armv7l-3.9/biom/commands/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:23,003 copying build/lib.linux-armv7l-3.9/biom/commands/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:23,006 copying build/lib.linux-armv7l-3.9/biom/commands/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:03:23,008 copying build/lib.linux-armv7l-3.9/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:23,011 copying build/lib.linux-armv7l-3.9/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:23,013 copying build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:23,022 copying build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:03:23,037 running install_egg_info 2021-07-09T22:03:23,058 running egg_info 2021-07-09T22:03:23,059 writing biom_format.egg-info/PKG-INFO 2021-07-09T22:03:23,060 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-09T22:03:23,062 writing requirements to biom_format.egg-info/requires.txt 2021-07-09T22:03:23,063 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-09T22:03:23,076 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-09T22:03:23,147 reading manifest template 'MANIFEST.in' 2021-07-09T22:03:23,178 no previously-included directories found matching 'docs/_build' 2021-07-09T22:03:23,181 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-09T22:03:23,184 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-09T22:03:23,186 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-09T22:03:23,186 adding license file 'COPYING.txt' 2021-07-09T22:03:23,212 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-09T22:03:23,214 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.0.0-py3.9.egg-info 2021-07-09T22:03:23,225 running install_scripts 2021-07-09T22:03:23,308 creating build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data 2021-07-09T22:03:23,309 creating build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,310 copying build/scripts-3.9/subset_biom.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,312 copying build/scripts-3.9/convert_biom.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,313 copying build/scripts-3.9/biom_validator.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,315 copying build/scripts-3.9/biom -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,317 copying build/scripts-3.9/serve-biom -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,318 copying build/scripts-3.9/print_biom_table_summary.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,320 copying build/scripts-3.9/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,321 copying build/scripts-3.9/print_biom_python_config.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts 2021-07-09T22:03:23,323 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/subset_biom.py to 755 2021-07-09T22:03:23,323 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/convert_biom.py to 755 2021-07-09T22:03:23,323 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/biom_validator.py to 755 2021-07-09T22:03:23,324 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/biom to 755 2021-07-09T22:03:23,324 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/serve-biom to 755 2021-07-09T22:03:23,324 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/print_biom_table_summary.py to 755 2021-07-09T22:03:23,324 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/add_metadata.py to 755 2021-07-09T22:03:23,325 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.0.data/scripts/print_biom_python_config.py to 755 2021-07-09T22:03:23,350 adding license file "COPYING.txt" (matched pattern "COPYING*") 2021-07-09T22:03:23,355 creating build/bdist.linux-armv7l/wheel/biom_format-2.0.0.dist-info/WHEEL 2021-07-09T22:03:23,357 creating '/tmp/pip-wheel-86x53hs3/biom_format-2.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-09T22:03:23,360 adding 'biom/__init__.py' 2021-07-09T22:03:23,449 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T22:03:23,495 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T22:03:23,523 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T22:03:23,525 adding 'biom/exception.py' 2021-07-09T22:03:23,528 adding 'biom/parse.py' 2021-07-09T22:03:23,542 adding 'biom/table.py' 2021-07-09T22:03:23,546 adding 'biom/util.py' 2021-07-09T22:03:23,547 adding 'biom/commands/__init__.py' 2021-07-09T22:03:23,549 adding 'biom/commands/installation_informer.py' 2021-07-09T22:03:23,550 adding 'biom/commands/metadata_adder.py' 2021-07-09T22:03:23,552 adding 'biom/commands/table_converter.py' 2021-07-09T22:03:23,554 adding 'biom/commands/table_subsetter.py' 2021-07-09T22:03:23,555 adding 'biom/commands/table_summarizer.py' 2021-07-09T22:03:23,557 adding 'biom/commands/table_validator.py' 2021-07-09T22:03:23,559 adding 'biom/interfaces/__init__.py' 2021-07-09T22:03:23,561 adding 'biom/interfaces/html/__init__.py' 2021-07-09T22:03:23,562 adding 'biom/interfaces/html/input_handler.py' 2021-07-09T22:03:23,563 adding 'biom/interfaces/html/output_handler.py' 2021-07-09T22:03:23,565 adding 'biom/interfaces/html/config/__init__.py' 2021-07-09T22:03:23,566 adding 'biom/interfaces/html/config/add_metadata.py' 2021-07-09T22:03:23,568 adding 'biom/interfaces/html/config/convert.py' 2021-07-09T22:03:23,569 adding 'biom/interfaces/html/config/show_install_info.py' 2021-07-09T22:03:23,570 adding 'biom/interfaces/html/config/summarize_table.py' 2021-07-09T22:03:23,572 adding 'biom/interfaces/html/config/validate_table.py' 2021-07-09T22:03:23,573 adding 'biom/interfaces/optparse/__init__.py' 2021-07-09T22:03:23,575 adding 'biom/interfaces/optparse/input_handler.py' 2021-07-09T22:03:23,576 adding 'biom/interfaces/optparse/output_handler.py' 2021-07-09T22:03:23,578 adding 'biom/interfaces/optparse/config/__init__.py' 2021-07-09T22:03:23,579 adding 'biom/interfaces/optparse/config/add_metadata.py' 2021-07-09T22:03:23,581 adding 'biom/interfaces/optparse/config/convert.py' 2021-07-09T22:03:23,582 adding 'biom/interfaces/optparse/config/show_install_info.py' 2021-07-09T22:03:23,583 adding 'biom/interfaces/optparse/config/subset_table.py' 2021-07-09T22:03:23,585 adding 'biom/interfaces/optparse/config/summarize_table.py' 2021-07-09T22:03:23,586 adding 'biom/interfaces/optparse/config/validate_table.py' 2021-07-09T22:03:23,589 adding 'biom_format-2.0.0.data/scripts/add_metadata.py' 2021-07-09T22:03:23,590 adding 'biom_format-2.0.0.data/scripts/biom' 2021-07-09T22:03:23,591 adding 'biom_format-2.0.0.data/scripts/biom_validator.py' 2021-07-09T22:03:23,592 adding 'biom_format-2.0.0.data/scripts/convert_biom.py' 2021-07-09T22:03:23,593 adding 'biom_format-2.0.0.data/scripts/print_biom_python_config.py' 2021-07-09T22:03:23,595 adding 'biom_format-2.0.0.data/scripts/print_biom_table_summary.py' 2021-07-09T22:03:23,596 adding 'biom_format-2.0.0.data/scripts/serve-biom' 2021-07-09T22:03:23,597 adding 'biom_format-2.0.0.data/scripts/subset_biom.py' 2021-07-09T22:03:23,599 adding 'biom_format-2.0.0.dist-info/COPYING.txt' 2021-07-09T22:03:23,601 adding 'biom_format-2.0.0.dist-info/METADATA' 2021-07-09T22:03:23,602 adding 'biom_format-2.0.0.dist-info/WHEEL' 2021-07-09T22:03:23,603 adding 'biom_format-2.0.0.dist-info/top_level.txt' 2021-07-09T22:03:23,604 adding 'biom_format-2.0.0.dist-info/RECORD' 2021-07-09T22:03:23,612 removing build/bdist.linux-armv7l/wheel 2021-07-09T22:03:23,748 Building wheel for biom-format (setup.py): finished with status 'done' 2021-07-09T22:03:23,755 Created wheel for biom-format: filename=biom_format-2.0.0-cp39-cp39-linux_armv7l.whl size=371643 sha256=7f2584f3e1b8e8897d7c7b4fbaf097a44a847fda65a385f8bda36b9177394b68 2021-07-09T22:03:23,755 Stored in directory: /tmp/pip-ephem-wheel-cache-grst35p4/wheels/54/fc/23/5d7a8f4de915ebf74f399613addbe23d8ed6a4a8f30f0fc34e 2021-07-09T22:03:23,765 Successfully built biom-format 2021-07-09T22:03:23,783 Removed build tracker: '/tmp/pip-req-tracker-5hy2qgvg'