2021-07-09T22:15:52,373 Created temporary directory: /tmp/pip-ephem-wheel-cache-0_dmez9z 2021-07-09T22:15:52,376 Created temporary directory: /tmp/pip-req-tracker-gb4wczjh 2021-07-09T22:15:52,377 Initialized build tracking at /tmp/pip-req-tracker-gb4wczjh 2021-07-09T22:15:52,377 Created build tracker: /tmp/pip-req-tracker-gb4wczjh 2021-07-09T22:15:52,377 Entered build tracker: /tmp/pip-req-tracker-gb4wczjh 2021-07-09T22:15:52,378 Created temporary directory: /tmp/pip-wheel-inm3xvh1 2021-07-09T22:15:52,411 1 location(s) to search for versions of biom-format: 2021-07-09T22:15:52,411 * https://pypi.org/simple/biom-format/ 2021-07-09T22:15:52,412 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-09T22:15:52,412 Getting page https://pypi.org/simple/biom-format/ 2021-07-09T22:15:52,414 Found index url https://pypi.org/simple 2021-07-09T22:15:52,511 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-09T22:15:52,512 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-09T22:15:52,512 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-09T22:15:52,512 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-09T22:15:52,512 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-09T22:15:52,513 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-09T22:15:52,513 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-09T22:15:52,514 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-09T22:15:52,514 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-09T22:15:52,514 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-09T22:15:52,514 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-09T22:15:52,515 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-09T22:15:52,530 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-09T22:15:52,531 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-09T22:15:52,531 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-09T22:15:52,531 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-09T22:15:52,532 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-09T22:15:52,532 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-09T22:15:52,532 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-09T22:15:52,535 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-09T22:15:52,553 Collecting biom-format==2.0.1 2021-07-09T22:15:52,555 Created temporary directory: /tmp/pip-unpack-zbuqon12 2021-07-09T22:15:52,937 Downloading biom-format-2.0.1.tar.gz (859 kB) 2021-07-09T22:15:54,132 Added biom-format==2.0.1 from https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c to build tracker '/tmp/pip-req-tracker-gb4wczjh' 2021-07-09T22:15:54,134 Running setup.py (path:/tmp/pip-wheel-inm3xvh1/biom-format_d7de3c79540a4eb78c64ecdb6865af18/setup.py) egg_info for package biom-format 2021-07-09T22:15:54,134 Created temporary directory: /tmp/pip-pip-egg-info-9gaxngj8 2021-07-09T22:15:54,135 Running command python setup.py egg_info 2021-07-09T22:15:55,158 running egg_info 2021-07-09T22:15:55,161 creating /tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info 2021-07-09T22:15:55,162 writing /tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info/PKG-INFO 2021-07-09T22:15:55,164 writing dependency_links to /tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info/dependency_links.txt 2021-07-09T22:15:55,166 writing requirements to /tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info/requires.txt 2021-07-09T22:15:55,167 writing top-level names to /tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info/top_level.txt 2021-07-09T22:15:55,169 writing manifest file '/tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info/SOURCES.txt' 2021-07-09T22:15:55,540 reading manifest file '/tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info/SOURCES.txt' 2021-07-09T22:15:55,542 reading manifest template 'MANIFEST.in' 2021-07-09T22:15:55,585 no previously-included directories found matching 'docs/_build' 2021-07-09T22:15:55,587 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-09T22:15:55,589 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-09T22:15:55,590 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-09T22:15:55,590 adding license file 'COPYING.txt' 2021-07-09T22:15:55,610 writing manifest file '/tmp/pip-pip-egg-info-9gaxngj8/biom_format.egg-info/SOURCES.txt' 2021-07-09T22:15:55,717 Source in /tmp/pip-wheel-inm3xvh1/biom-format_d7de3c79540a4eb78c64ecdb6865af18 has version 2.0.1, which satisfies requirement biom-format==2.0.1 from https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c 2021-07-09T22:15:55,718 Removed biom-format==2.0.1 from https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c from build tracker '/tmp/pip-req-tracker-gb4wczjh' 2021-07-09T22:15:55,722 Created temporary directory: /tmp/pip-unpack-yp0cctdq 2021-07-09T22:15:55,722 Building wheels for collected packages: biom-format 2021-07-09T22:15:55,727 Created temporary directory: /tmp/pip-wheel-imoxak40 2021-07-09T22:15:55,727 Building wheel for biom-format (setup.py): started 2021-07-09T22:15:55,727 Destination directory: /tmp/pip-wheel-imoxak40 2021-07-09T22:15:55,728 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-inm3xvh1/biom-format_d7de3c79540a4eb78c64ecdb6865af18/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-inm3xvh1/biom-format_d7de3c79540a4eb78c64ecdb6865af18/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-imoxak40 2021-07-09T22:15:56,760 running bdist_wheel 2021-07-09T22:15:56,956 running build 2021-07-09T22:15:56,957 running build_py 2021-07-09T22:15:57,091 creating build 2021-07-09T22:15:57,091 creating build/lib.linux-armv7l-3.9 2021-07-09T22:15:57,091 creating build/lib.linux-armv7l-3.9/biom 2021-07-09T22:15:57,092 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:15:57,095 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:15:57,097 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:15:57,101 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:15:57,103 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T22:15:57,106 creating build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,107 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,109 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,111 copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,112 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,115 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,117 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,119 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T22:15:57,123 creating build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-09T22:15:57,123 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-09T22:15:57,126 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:15:57,127 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:15:57,129 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:15:57,130 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T22:15:57,133 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,134 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,136 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,138 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,140 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,142 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,143 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,145 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T22:15:57,148 creating build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:15:57,149 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:15:57,151 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:15:57,152 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T22:15:57,155 creating build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:15:57,156 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:15:57,158 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:15:57,160 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:15:57,161 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:15:57,163 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:15:57,165 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T22:15:57,172 running build_ext 2021-07-09T22:15:57,177 building 'biom._filter' extension 2021-07-09T22:15:57,178 creating build/temp.linux-armv7l-3.9 2021-07-09T22:15:57,178 creating build/temp.linux-armv7l-3.9/biom 2021-07-09T22:15:57,179 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-09T22:15:57,565 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T22:15:57,565 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T22:15:57,565 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:15:57,565 from biom/_filter.c:346: 2021-07-09T22:15:57,565 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T22:15:57,566 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T22:15:57,566 | ^~~~~~~ 2021-07-09T22:15:57,757 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T22:15:57,761 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,761 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,761 | ^ 2021-07-09T22:15:57,761 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,762 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,762 from biom/_filter.c:16: 2021-07-09T22:15:57,762 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,762 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,762 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,766 biom/_filter.c:7188:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,766 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,766 | ^ 2021-07-09T22:15:57,766 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,766 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,766 from biom/_filter.c:16: 2021-07-09T22:15:57,766 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:15:57,766 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:15:57,767 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,770 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,770 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,770 | ^ 2021-07-09T22:15:57,770 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,770 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,771 from biom/_filter.c:16: 2021-07-09T22:15:57,771 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,771 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,771 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,774 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,774 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,774 | ^ 2021-07-09T22:15:57,775 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,775 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,775 from biom/_filter.c:16: 2021-07-09T22:15:57,775 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,775 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,775 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,778 biom/_filter.c:7188:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,779 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,779 | ^ 2021-07-09T22:15:57,779 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,779 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,779 from biom/_filter.c:16: 2021-07-09T22:15:57,779 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:15:57,779 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:15:57,779 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,783 biom/_filter.c:7188:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,783 7188 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,783 | ^ 2021-07-09T22:15:57,783 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,783 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,783 from biom/_filter.c:16: 2021-07-09T22:15:57,783 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,784 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,784 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,788 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,788 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,788 | ^ 2021-07-09T22:15:57,789 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,789 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,789 from biom/_filter.c:16: 2021-07-09T22:15:57,789 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,789 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,789 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,792 biom/_filter.c:7204:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,792 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,793 | ^ 2021-07-09T22:15:57,793 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,793 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,793 from biom/_filter.c:16: 2021-07-09T22:15:57,793 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:15:57,793 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:15:57,793 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,797 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,797 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,797 | ^ 2021-07-09T22:15:57,797 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,797 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,797 from biom/_filter.c:16: 2021-07-09T22:15:57,797 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,797 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,798 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,801 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,801 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,801 | ^ 2021-07-09T22:15:57,801 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,801 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,801 from biom/_filter.c:16: 2021-07-09T22:15:57,802 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,802 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,802 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,805 biom/_filter.c:7204:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,805 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,805 | ^ 2021-07-09T22:15:57,805 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,806 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,806 from biom/_filter.c:16: 2021-07-09T22:15:57,806 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:15:57,806 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:15:57,806 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,809 biom/_filter.c:7204:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:15:57,809 7204 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:15:57,810 | ^ 2021-07-09T22:15:57,810 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:15:57,810 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:15:57,810 from biom/_filter.c:16: 2021-07-09T22:15:57,810 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:15:57,810 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:15:57,810 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:15:57,948 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T22:15:57,948 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:15:57,948 from biom/_filter.c:346: 2021-07-09T22:15:57,949 At top level: 2021-07-09T22:15:57,949 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T22:15:57,949 1464 | _import_array(void) 2021-07-09T22:15:57,949 | ^~~~~~~~~~~~~ 2021-07-09T22:16:03,911 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-09T22:16:04,046 building 'biom._transform' extension 2021-07-09T22:16:04,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-09T22:16:04,440 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T22:16:04,441 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T22:16:04,441 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:16:04,441 from biom/_transform.c:346: 2021-07-09T22:16:04,441 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T22:16:04,441 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T22:16:04,441 | ^~~~~~~ 2021-07-09T22:16:04,522 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T22:16:04,523 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,523 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,524 | ^ 2021-07-09T22:16:04,524 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,524 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,524 from biom/_transform.c:16: 2021-07-09T22:16:04,524 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,524 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,524 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,526 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,526 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,526 | ^ 2021-07-09T22:16:04,526 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,527 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,527 from biom/_transform.c:16: 2021-07-09T22:16:04,527 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:04,527 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:04,527 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,528 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,528 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,529 | ^ 2021-07-09T22:16:04,529 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,529 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,529 from biom/_transform.c:16: 2021-07-09T22:16:04,529 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,529 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,529 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,530 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,531 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,531 | ^ 2021-07-09T22:16:04,531 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,531 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,531 from biom/_transform.c:16: 2021-07-09T22:16:04,531 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,531 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,531 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,533 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,533 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,533 | ^ 2021-07-09T22:16:04,533 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,533 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,533 from biom/_transform.c:16: 2021-07-09T22:16:04,533 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:04,533 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:04,534 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,535 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,535 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,535 | ^ 2021-07-09T22:16:04,535 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,535 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,535 from biom/_transform.c:16: 2021-07-09T22:16:04,536 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,536 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,536 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,538 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,538 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,538 | ^ 2021-07-09T22:16:04,538 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,538 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,538 from biom/_transform.c:16: 2021-07-09T22:16:04,539 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,539 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,539 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,540 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,540 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,540 | ^ 2021-07-09T22:16:04,540 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,541 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,541 from biom/_transform.c:16: 2021-07-09T22:16:04,541 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:04,541 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:04,541 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,542 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,542 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,543 | ^ 2021-07-09T22:16:04,543 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,543 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,543 from biom/_transform.c:16: 2021-07-09T22:16:04,543 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,543 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,543 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,544 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,545 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,545 | ^ 2021-07-09T22:16:04,545 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,545 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,545 from biom/_transform.c:16: 2021-07-09T22:16:04,545 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,545 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,545 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,547 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,547 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,547 | ^ 2021-07-09T22:16:04,547 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,547 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,547 from biom/_transform.c:16: 2021-07-09T22:16:04,547 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:04,547 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:04,548 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,549 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:04,549 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:04,549 | ^ 2021-07-09T22:16:04,549 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:04,549 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:04,549 from biom/_transform.c:16: 2021-07-09T22:16:04,550 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:04,550 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:04,550 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:04,664 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T22:16:04,664 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:16:04,665 from biom/_transform.c:346: 2021-07-09T22:16:04,665 At top level: 2021-07-09T22:16:04,665 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T22:16:04,665 1464 | _import_array(void) 2021-07-09T22:16:04,665 | ^~~~~~~~~~~~~ 2021-07-09T22:16:06,334 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-09T22:16:06,454 building 'biom._subsample' extension 2021-07-09T22:16:06,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-09T22:16:06,827 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T22:16:06,828 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T22:16:06,828 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:16:06,828 from biom/_subsample.c:346: 2021-07-09T22:16:06,828 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T22:16:06,828 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T22:16:06,828 | ^~~~~~~ 2021-07-09T22:16:06,918 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T22:16:06,920 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,920 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,920 | ^ 2021-07-09T22:16:06,921 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,921 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,921 from biom/_subsample.c:16: 2021-07-09T22:16:06,921 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,921 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,923 biom/_subsample.c:4415:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,923 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,923 | ^ 2021-07-09T22:16:06,923 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,923 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,924 from biom/_subsample.c:16: 2021-07-09T22:16:06,924 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:06,924 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:06,924 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,925 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,926 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,926 | ^ 2021-07-09T22:16:06,926 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,926 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,926 from biom/_subsample.c:16: 2021-07-09T22:16:06,926 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,926 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,926 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,928 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,928 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,928 | ^ 2021-07-09T22:16:06,928 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,928 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,928 from biom/_subsample.c:16: 2021-07-09T22:16:06,929 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,929 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,929 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,930 biom/_subsample.c:4415:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,931 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,931 | ^ 2021-07-09T22:16:06,931 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,931 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,931 from biom/_subsample.c:16: 2021-07-09T22:16:06,931 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:06,931 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:06,931 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,933 biom/_subsample.c:4415:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,933 4415 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,933 | ^ 2021-07-09T22:16:06,933 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,933 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,933 from biom/_subsample.c:16: 2021-07-09T22:16:06,934 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,934 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,934 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,936 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,936 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,936 | ^ 2021-07-09T22:16:06,937 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,937 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,937 from biom/_subsample.c:16: 2021-07-09T22:16:06,937 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,937 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,937 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,938 biom/_subsample.c:4431:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,939 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,939 | ^ 2021-07-09T22:16:06,939 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,939 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,939 from biom/_subsample.c:16: 2021-07-09T22:16:06,939 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:06,939 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:06,939 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,941 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,941 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,941 | ^ 2021-07-09T22:16:06,941 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,941 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,942 from biom/_subsample.c:16: 2021-07-09T22:16:06,942 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,942 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,942 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,943 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,944 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,944 | ^ 2021-07-09T22:16:06,944 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,944 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,944 from biom/_subsample.c:16: 2021-07-09T22:16:06,944 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,944 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,944 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,946 biom/_subsample.c:4431:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,946 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,946 | ^ 2021-07-09T22:16:06,946 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,946 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,946 from biom/_subsample.c:16: 2021-07-09T22:16:06,947 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T22:16:06,947 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T22:16:06,947 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:06,948 biom/_subsample.c:4431:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T22:16:06,948 4431 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T22:16:06,949 | ^ 2021-07-09T22:16:06,949 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T22:16:06,949 from /usr/include/python3.9/Python.h:97, 2021-07-09T22:16:06,949 from biom/_subsample.c:16: 2021-07-09T22:16:06,949 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T22:16:06,949 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T22:16:06,949 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T22:16:07,078 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T22:16:07,079 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T22:16:07,079 from biom/_subsample.c:346: 2021-07-09T22:16:07,079 At top level: 2021-07-09T22:16:07,079 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T22:16:07,079 1464 | _import_array(void) 2021-07-09T22:16:07,079 | ^~~~~~~~~~~~~ 2021-07-09T22:16:10,157 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-09T22:16:10,273 running build_scripts 2021-07-09T22:16:10,274 creating build/scripts-3.9 2021-07-09T22:16:10,275 copying and adjusting scripts/subset_biom.py -> build/scripts-3.9 2021-07-09T22:16:10,276 copying and adjusting scripts/biom_validator.py -> build/scripts-3.9 2021-07-09T22:16:10,278 copying scripts/serve-biom -> build/scripts-3.9 2021-07-09T22:16:10,280 copying and adjusting scripts/print_biom_table_summary.py -> build/scripts-3.9 2021-07-09T22:16:10,281 copying and adjusting scripts/print_biom_python_config.py -> build/scripts-3.9 2021-07-09T22:16:10,282 copying and adjusting scripts/add_metadata.py -> build/scripts-3.9 2021-07-09T22:16:10,284 copying scripts/biom -> build/scripts-3.9 2021-07-09T22:16:10,285 copying and adjusting scripts/convert_biom.py -> build/scripts-3.9 2021-07-09T22:16:10,286 changing mode of build/scripts-3.9/subset_biom.py from 644 to 755 2021-07-09T22:16:10,286 changing mode of build/scripts-3.9/biom_validator.py from 644 to 755 2021-07-09T22:16:10,287 changing mode of build/scripts-3.9/serve-biom from 644 to 755 2021-07-09T22:16:10,287 changing mode of build/scripts-3.9/print_biom_table_summary.py from 644 to 755 2021-07-09T22:16:10,287 changing mode of build/scripts-3.9/print_biom_python_config.py from 644 to 755 2021-07-09T22:16:10,287 changing mode of build/scripts-3.9/add_metadata.py from 644 to 755 2021-07-09T22:16:10,288 changing mode of build/scripts-3.9/convert_biom.py from 644 to 755 2021-07-09T22:16:10,296 installing to build/bdist.linux-armv7l/wheel 2021-07-09T22:16:10,297 running install 2021-07-09T22:16:10,298 running install_lib 2021-07-09T22:16:10,303 creating build/bdist.linux-armv7l 2021-07-09T22:16:10,303 creating build/bdist.linux-armv7l/wheel 2021-07-09T22:16:10,305 creating build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,307 copying build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,319 copying build/lib.linux-armv7l-3.9/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,321 copying build/lib.linux-armv7l-3.9/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,323 creating build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-09T22:16:10,324 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:16:10,325 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:16:10,327 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:16:10,328 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T22:16:10,331 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,332 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,334 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,336 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,338 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,339 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/subset_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,342 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,343 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T22:16:10,345 copying build/lib.linux-armv7l-3.9/biom/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-09T22:16:10,347 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:16:10,348 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:16:10,350 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:16:10,352 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T22:16:10,354 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:16:10,355 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:16:10,357 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:16:10,360 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:16:10,361 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:16:10,363 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:16:10,365 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T22:16:10,367 copying build/lib.linux-armv7l-3.9/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,373 copying build/lib.linux-armv7l-3.9/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,376 creating build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,376 copying build/lib.linux-armv7l-3.9/biom/commands/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,379 copying build/lib.linux-armv7l-3.9/biom/commands/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,382 copying build/lib.linux-armv7l-3.9/biom/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,383 copying build/lib.linux-armv7l-3.9/biom/commands/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,386 copying build/lib.linux-armv7l-3.9/biom/commands/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,388 copying build/lib.linux-armv7l-3.9/biom/commands/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,391 copying build/lib.linux-armv7l-3.9/biom/commands/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T22:16:10,394 copying build/lib.linux-armv7l-3.9/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,397 copying build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,405 copying build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T22:16:10,414 running install_egg_info 2021-07-09T22:16:10,437 running egg_info 2021-07-09T22:16:10,438 writing biom_format.egg-info/PKG-INFO 2021-07-09T22:16:10,440 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-09T22:16:10,441 writing requirements to biom_format.egg-info/requires.txt 2021-07-09T22:16:10,443 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-09T22:16:10,455 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-09T22:16:10,532 reading manifest template 'MANIFEST.in' 2021-07-09T22:16:10,565 no previously-included directories found matching 'docs/_build' 2021-07-09T22:16:10,568 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-09T22:16:10,571 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-09T22:16:10,573 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-09T22:16:10,573 adding license file 'COPYING.txt' 2021-07-09T22:16:10,599 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-09T22:16:10,602 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.0.1-py3.9.egg-info 2021-07-09T22:16:10,612 running install_scripts 2021-07-09T22:16:10,699 creating build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data 2021-07-09T22:16:10,699 creating build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,701 copying build/scripts-3.9/subset_biom.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,703 copying build/scripts-3.9/biom_validator.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,706 copying build/scripts-3.9/serve-biom -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,708 copying build/scripts-3.9/print_biom_table_summary.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,711 copying build/scripts-3.9/print_biom_python_config.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,713 copying build/scripts-3.9/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,715 copying build/scripts-3.9/biom -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,718 copying build/scripts-3.9/convert_biom.py -> build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts 2021-07-09T22:16:10,720 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/subset_biom.py to 755 2021-07-09T22:16:10,720 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/biom_validator.py to 755 2021-07-09T22:16:10,721 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/serve-biom to 755 2021-07-09T22:16:10,721 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/print_biom_table_summary.py to 755 2021-07-09T22:16:10,721 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/print_biom_python_config.py to 755 2021-07-09T22:16:10,722 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/add_metadata.py to 755 2021-07-09T22:16:10,722 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/biom to 755 2021-07-09T22:16:10,723 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.0.1.data/scripts/convert_biom.py to 755 2021-07-09T22:16:10,751 adding license file "COPYING.txt" (matched pattern "COPYING*") 2021-07-09T22:16:10,755 creating build/bdist.linux-armv7l/wheel/biom_format-2.0.1.dist-info/WHEEL 2021-07-09T22:16:10,758 creating '/tmp/pip-wheel-imoxak40/biom_format-2.0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-09T22:16:10,761 adding 'biom/__init__.py' 2021-07-09T22:16:10,850 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T22:16:10,896 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T22:16:10,925 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T22:16:10,927 adding 'biom/exception.py' 2021-07-09T22:16:10,930 adding 'biom/parse.py' 2021-07-09T22:16:10,944 adding 'biom/table.py' 2021-07-09T22:16:10,947 adding 'biom/util.py' 2021-07-09T22:16:10,949 adding 'biom/commands/__init__.py' 2021-07-09T22:16:10,951 adding 'biom/commands/installation_informer.py' 2021-07-09T22:16:10,952 adding 'biom/commands/metadata_adder.py' 2021-07-09T22:16:10,954 adding 'biom/commands/table_converter.py' 2021-07-09T22:16:10,956 adding 'biom/commands/table_subsetter.py' 2021-07-09T22:16:10,957 adding 'biom/commands/table_summarizer.py' 2021-07-09T22:16:10,960 adding 'biom/commands/table_validator.py' 2021-07-09T22:16:10,962 adding 'biom/interfaces/__init__.py' 2021-07-09T22:16:10,964 adding 'biom/interfaces/html/__init__.py' 2021-07-09T22:16:10,965 adding 'biom/interfaces/html/input_handler.py' 2021-07-09T22:16:10,966 adding 'biom/interfaces/html/output_handler.py' 2021-07-09T22:16:10,968 adding 'biom/interfaces/html/config/__init__.py' 2021-07-09T22:16:10,969 adding 'biom/interfaces/html/config/add_metadata.py' 2021-07-09T22:16:10,971 adding 'biom/interfaces/html/config/convert.py' 2021-07-09T22:16:10,972 adding 'biom/interfaces/html/config/show_install_info.py' 2021-07-09T22:16:10,974 adding 'biom/interfaces/html/config/summarize_table.py' 2021-07-09T22:16:10,975 adding 'biom/interfaces/html/config/validate_table.py' 2021-07-09T22:16:10,977 adding 'biom/interfaces/optparse/__init__.py' 2021-07-09T22:16:10,978 adding 'biom/interfaces/optparse/input_handler.py' 2021-07-09T22:16:10,980 adding 'biom/interfaces/optparse/output_handler.py' 2021-07-09T22:16:10,982 adding 'biom/interfaces/optparse/config/__init__.py' 2021-07-09T22:16:10,983 adding 'biom/interfaces/optparse/config/add_metadata.py' 2021-07-09T22:16:10,985 adding 'biom/interfaces/optparse/config/convert.py' 2021-07-09T22:16:10,986 adding 'biom/interfaces/optparse/config/show_install_info.py' 2021-07-09T22:16:10,988 adding 'biom/interfaces/optparse/config/subset_table.py' 2021-07-09T22:16:10,989 adding 'biom/interfaces/optparse/config/summarize_table.py' 2021-07-09T22:16:10,991 adding 'biom/interfaces/optparse/config/validate_table.py' 2021-07-09T22:16:10,993 adding 'biom_format-2.0.1.data/scripts/add_metadata.py' 2021-07-09T22:16:10,994 adding 'biom_format-2.0.1.data/scripts/biom' 2021-07-09T22:16:10,996 adding 'biom_format-2.0.1.data/scripts/biom_validator.py' 2021-07-09T22:16:10,997 adding 'biom_format-2.0.1.data/scripts/convert_biom.py' 2021-07-09T22:16:10,998 adding 'biom_format-2.0.1.data/scripts/print_biom_python_config.py' 2021-07-09T22:16:10,999 adding 'biom_format-2.0.1.data/scripts/print_biom_table_summary.py' 2021-07-09T22:16:11,001 adding 'biom_format-2.0.1.data/scripts/serve-biom' 2021-07-09T22:16:11,002 adding 'biom_format-2.0.1.data/scripts/subset_biom.py' 2021-07-09T22:16:11,005 adding 'biom_format-2.0.1.dist-info/COPYING.txt' 2021-07-09T22:16:11,006 adding 'biom_format-2.0.1.dist-info/METADATA' 2021-07-09T22:16:11,007 adding 'biom_format-2.0.1.dist-info/WHEEL' 2021-07-09T22:16:11,008 adding 'biom_format-2.0.1.dist-info/top_level.txt' 2021-07-09T22:16:11,009 adding 'biom_format-2.0.1.dist-info/RECORD' 2021-07-09T22:16:11,022 removing build/bdist.linux-armv7l/wheel 2021-07-09T22:16:11,161 Building wheel for biom-format (setup.py): finished with status 'done' 2021-07-09T22:16:11,168 Created wheel for biom-format: filename=biom_format-2.0.1-cp39-cp39-linux_armv7l.whl size=373818 sha256=d6182bef514f635438b834481309528194ee4cce9ca22cbebd602f0fd535ec3d 2021-07-09T22:16:11,169 Stored in directory: /tmp/pip-ephem-wheel-cache-0_dmez9z/wheels/f2/49/49/1c79efba4107348de2b3e6651d5b46045075d79f445d34e9c0 2021-07-09T22:16:11,181 Successfully built biom-format 2021-07-09T22:16:11,198 Removed build tracker: '/tmp/pip-req-tracker-gb4wczjh'