2021-07-09T22:22:44,952 Created temporary directory: /tmp/pip-ephem-wheel-cache-s1z4dtm6
2021-07-09T22:22:44,955 Created temporary directory: /tmp/pip-req-tracker-zltf50k8
2021-07-09T22:22:44,956 Initialized build tracking at /tmp/pip-req-tracker-zltf50k8
2021-07-09T22:22:44,956 Created build tracker: /tmp/pip-req-tracker-zltf50k8
2021-07-09T22:22:44,956 Entered build tracker: /tmp/pip-req-tracker-zltf50k8
2021-07-09T22:22:44,957 Created temporary directory: /tmp/pip-wheel-1_mc55o0
2021-07-09T22:22:44,990 1 location(s) to search for versions of scikit-bio:
2021-07-09T22:22:44,990 * https://pypi.org/simple/scikit-bio/
2021-07-09T22:22:44,990 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/
2021-07-09T22:22:44,991 Getting page https://pypi.org/simple/scikit-bio/
2021-07-09T22:22:44,992 Found index url https://pypi.org/simple
2021-07-09T22:22:45,091   Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz#sha256=e68193db29015e8f861b7d548f432384aa1741575028ce9a138b39ebee66e1ed (from https://pypi.org/simple/scikit-bio/), version: 0.1.0
2021-07-09T22:22:45,092   Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz#sha256=f758a5136a211cba16c8e6f1ed250f0fadb27fab436c5b7a73902dbb114618df (from https://pypi.org/simple/scikit-bio/), version: 0.1.1
2021-07-09T22:22:45,092   Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz#sha256=bdd9cb68dcc5e3ffc00fa5ae21e9e0f92f1f9c2e5a24a671596bb39d0d3e02a7 (from https://pypi.org/simple/scikit-bio/), version: 0.1.2
2021-07-09T22:22:45,092   Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz#sha256=11af62a5d8302da204c004b16bc625cc055e7322633b289353929ccc4b872e74 (from https://pypi.org/simple/scikit-bio/), version: 0.1.3
2021-07-09T22:22:45,093   Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz#sha256=466d50ced117dafe24f734eb6afd2ec0465caebe5d3e775402582ac77eecc2a8 (from https://pypi.org/simple/scikit-bio/), version: 0.1.4
2021-07-09T22:22:45,093   Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz#sha256=f136639c66f48d1e83b9799e044c49f0febefa4ead4b4fb7c88ec503147bdb03 (from https://pypi.org/simple/scikit-bio/), version: 0.1.5
2021-07-09T22:22:45,093   Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz#sha256=348687b973be55505ec7e90c40a21921533d3b5021599705922b8c730cb8c872 (from https://pypi.org/simple/scikit-bio/), version: 0.2.0
2021-07-09T22:22:45,093   Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz#sha256=adc7a3aa93ca7a3f642531e2cf64778ae243087fd6279d5354fdf157943f41cb (from https://pypi.org/simple/scikit-bio/), version: 0.2.1
2021-07-09T22:22:45,094   Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz#sha256=6c5fb4b6baec0abde209d33e86e95ff4a776f653a6c3916aa95831eafe03472a (from https://pypi.org/simple/scikit-bio/), version: 0.2.2
2021-07-09T22:22:45,094   Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz#sha256=5feec63b49249360d2bb55d0163d7066f530d163b5474a3319ec197e7e74c683 (from https://pypi.org/simple/scikit-bio/), version: 0.2.3
2021-07-09T22:22:45,094   Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz#sha256=90a3f1ffd9401d8a8f8c1ba8fdd1ea63577fb2063209440d27e8e0834322a1e3 (from https://pypi.org/simple/scikit-bio/), version: 0.4.0
2021-07-09T22:22:45,094   Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz#sha256=66e755b6c7d5b861c7eb63aeb46f4d9afe74ee0ac93c1215e0aa57003e573b0b (from https://pypi.org/simple/scikit-bio/), version: 0.4.1
2021-07-09T22:22:45,095   Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz#sha256=fe33a6cd7e6eb3fd8c088491422e499cfb36fab63c38659b587230f3dd63d91a (from https://pypi.org/simple/scikit-bio/), version: 0.4.2
2021-07-09T22:22:45,095   Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip#sha256=482194dd827b86fdf340d1576b07d70f8c62158d471d733fa3e73fe316afaa3a (from https://pypi.org/simple/scikit-bio/), version: 0.5.0
2021-07-09T22:22:45,095   Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz#sha256=2d606f0bbd50df3e5814c10260d0e1a35484ecf141e5e5c809d9c9dbf87a3655 (from https://pypi.org/simple/scikit-bio/), version: 0.5.1
2021-07-09T22:22:45,096   Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz#sha256=566c83249d2d338104d106c3a8ba36fa1afeabf10ead8e95b84605b71c65b743 (from https://pypi.org/simple/scikit-bio/), version: 0.5.2
2021-07-09T22:22:45,096   Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz#sha256=fbeebe39b0026601fa0f641fdad45abc7c2810fa75d43142f3c5473aff07ff59 (from https://pypi.org/simple/scikit-bio/), version: 0.5.3
2021-07-09T22:22:45,096   Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz#sha256=3243f1995ef24643c09ff4d9391a79528aadd8232e5aa5d66c38d7b2e0c92f24 (from https://pypi.org/simple/scikit-bio/), version: 0.5.4
2021-07-09T22:22:45,096   Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz#sha256=9fa813be66e88a994f7b7a68b8ba2216e205c525caa8585386ebdeebed6428df (from https://pypi.org/simple/scikit-bio/), version: 0.5.5
2021-07-09T22:22:45,097   Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz#sha256=48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea (from https://pypi.org/simple/scikit-bio/), version: 0.5.6
2021-07-09T22:22:45,097 Skipping link: not a file: https://pypi.org/simple/scikit-bio/
2021-07-09T22:22:45,116 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates
2021-07-09T22:22:45,133 Collecting scikit-bio==0.1.3
2021-07-09T22:22:45,135   Created temporary directory: /tmp/pip-unpack-v_n_g7y2
2021-07-09T22:22:45,760   Downloading scikit-bio-0.1.3.tar.gz (1.7 MB)
2021-07-09T22:22:46,744   Added scikit-bio==0.1.3 from https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz#sha256=11af62a5d8302da204c004b16bc625cc055e7322633b289353929ccc4b872e74 to build tracker '/tmp/pip-req-tracker-zltf50k8'
2021-07-09T22:22:46,745     Running setup.py (path:/tmp/pip-wheel-1_mc55o0/scikit-bio_04368437952b47de8cb7a4b918dd0498/setup.py) egg_info for package scikit-bio
2021-07-09T22:22:46,746     Created temporary directory: /tmp/pip-pip-egg-info-3s5yk5i4
2021-07-09T22:22:46,746     Running command python setup.py egg_info
2021-07-09T22:22:47,844     running egg_info
2021-07-09T22:22:47,846     creating /tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info
2021-07-09T22:22:47,847     writing /tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info/PKG-INFO
2021-07-09T22:22:47,849     writing dependency_links to /tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info/dependency_links.txt
2021-07-09T22:22:47,851     writing requirements to /tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info/requires.txt
2021-07-09T22:22:47,852     writing top-level names to /tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info/top_level.txt
2021-07-09T22:22:47,854     writing manifest file '/tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info/SOURCES.txt'
2021-07-09T22:22:48,250     reading manifest file '/tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info/SOURCES.txt'
2021-07-09T22:22:48,251     reading manifest template 'MANIFEST.in'
2021-07-09T22:22:48,260     warning: no directories found matching 'examples'
2021-07-09T22:22:48,281     no previously-included directories found matching 'doc/build'
2021-07-09T22:22:48,283     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-09T22:22:48,284     warning: no previously-included files matching '*.pyo' found anywhere in distribution
2021-07-09T22:22:48,285     adding license file 'COPYING.txt'
2021-07-09T22:22:48,300     writing manifest file '/tmp/pip-pip-egg-info-3s5yk5i4/scikit_bio.egg-info/SOURCES.txt'
2021-07-09T22:22:48,407   Source in /tmp/pip-wheel-1_mc55o0/scikit-bio_04368437952b47de8cb7a4b918dd0498 has version 0.1.3, which satisfies requirement scikit-bio==0.1.3 from https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz#sha256=11af62a5d8302da204c004b16bc625cc055e7322633b289353929ccc4b872e74
2021-07-09T22:22:48,408   Removed scikit-bio==0.1.3 from https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz#sha256=11af62a5d8302da204c004b16bc625cc055e7322633b289353929ccc4b872e74 from build tracker '/tmp/pip-req-tracker-zltf50k8'
2021-07-09T22:22:48,412 Created temporary directory: /tmp/pip-unpack-n22_7e25
2021-07-09T22:22:48,413 Building wheels for collected packages: scikit-bio
2021-07-09T22:22:48,417   Created temporary directory: /tmp/pip-wheel-59y_6y_x
2021-07-09T22:22:48,418   Building wheel for scikit-bio (setup.py): started
2021-07-09T22:22:48,418   Destination directory: /tmp/pip-wheel-59y_6y_x
2021-07-09T22:22:48,418   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1_mc55o0/scikit-bio_04368437952b47de8cb7a4b918dd0498/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1_mc55o0/scikit-bio_04368437952b47de8cb7a4b918dd0498/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-59y_6y_x
2021-07-09T22:22:49,473   running bdist_wheel
2021-07-09T22:22:49,667   running build
2021-07-09T22:22:49,667   running build_py
2021-07-09T22:22:49,802   creating build
2021-07-09T22:22:49,802   creating build/lib.linux-armv7l-3.9
2021-07-09T22:22:49,803   creating build/lib.linux-armv7l-3.9/skbio
2021-07-09T22:22:49,804   copying skbio/__init__.py -> build/lib.linux-armv7l-3.9/skbio
2021-07-09T22:22:49,806   creating build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:22:49,807   copying skbio/app/parameters.py -> build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:22:49,810   copying skbio/app/util.py -> build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:22:49,813   copying skbio/app/__init__.py -> build/lib.linux-armv7l-3.9/skbio/app
2021-07-09T22:22:49,815   creating build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:22:49,816   copying skbio/util/sort.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:22:49,818   copying skbio/util/testing.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:22:49,820   copying skbio/util/io.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:22:49,822   copying skbio/util/misc.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:22:49,824   copying skbio/util/__init__.py -> build/lib.linux-armv7l-3.9/skbio/util
2021-07-09T22:22:49,826   creating build/lib.linux-armv7l-3.9/skbio/draw
2021-07-09T22:22:49,827   copying skbio/draw/distributions.py -> build/lib.linux-armv7l-3.9/skbio/draw
2021-07-09T22:22:49,830   copying skbio/draw/__init__.py -> build/lib.linux-armv7l-3.9/skbio/draw
2021-07-09T22:22:49,833   creating build/lib.linux-armv7l-3.9/skbio/format
2021-07-09T22:22:49,833   copying skbio/format/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format
2021-07-09T22:22:49,836   creating build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:22:49,837   copying skbio/parse/record.py -> build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:22:49,840   copying skbio/parse/record_finder.py -> build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:22:49,842   copying skbio/parse/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse
2021-07-09T22:22:49,845   creating build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,846   copying skbio/core/distance.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,849   copying skbio/core/sequence.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,853   copying skbio/core/genetic_code.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,856   copying skbio/core/workflow.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,859   copying skbio/core/exception.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,861   copying skbio/core/warning.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,863   copying skbio/core/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:49,865   creating build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:22:49,866   copying skbio/math/gradient.py -> build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:22:49,869   copying skbio/math/subsample.py -> build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:22:49,871   copying skbio/math/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math
2021-07-09T22:22:49,874   creating build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:22:49,875   copying skbio/app/tests/test_parameters.py -> build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:22:49,878   copying skbio/app/tests/test_util.py -> build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:22:49,882   copying skbio/app/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/app/tests
2021-07-09T22:22:49,885   creating build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:22:49,885   copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:22:49,887   copying skbio/util/tests/test_io.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:22:49,889   copying skbio/util/tests/test_sort.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:22:49,892   copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:22:49,894   copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/util/tests
2021-07-09T22:22:49,896   creating build/lib.linux-armv7l-3.9/skbio/draw/tests
2021-07-09T22:22:49,897   copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-3.9/skbio/draw/tests
2021-07-09T22:22:49,900   copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/draw/tests
2021-07-09T22:22:49,902   creating build/lib.linux-armv7l-3.9/skbio/format/tests
2021-07-09T22:22:49,903   copying skbio/format/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format/tests
2021-07-09T22:22:49,906   creating build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:22:49,906   copying skbio/format/sequences/fastq.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:22:49,908   copying skbio/format/sequences/fasta.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:22:49,910   copying skbio/format/sequences/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences
2021-07-09T22:22:49,913   creating build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:22:49,914   copying skbio/format/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:22:49,916   copying skbio/format/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:22:49,917   copying skbio/format/sequences/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/format/sequences/tests
2021-07-09T22:22:49,920   creating build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:22:49,921   copying skbio/parse/tests/test_record.py -> build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:22:49,924   copying skbio/parse/tests/test_record_finder.py -> build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:22:49,926   copying skbio/parse/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse/tests
2021-07-09T22:22:49,929   creating build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:22:49,929   copying skbio/parse/sequences/fastq.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:22:49,932   copying skbio/parse/sequences/fasta.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:22:49,934   copying skbio/parse/sequences/factory.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:22:49,936   copying skbio/parse/sequences/iterator.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:22:49,938   copying skbio/parse/sequences/clustal.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:22:49,940   copying skbio/parse/sequences/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences
2021-07-09T22:22:49,943   creating build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:22:49,944   copying skbio/parse/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:22:49,946   copying skbio/parse/sequences/tests/test_iterator.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:22:49,949   copying skbio/parse/sequences/tests/test_clustal.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:22:49,951   copying skbio/parse/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:22:49,953   copying skbio/parse/sequences/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:22:49,955   copying skbio/parse/sequences/tests/test_factory.py -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests
2021-07-09T22:22:49,958   creating build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:22:49,959   copying skbio/core/tree/tree.py -> build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:22:49,963   copying skbio/core/tree/_nj.py -> build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:22:49,966   copying skbio/core/tree/trie.py -> build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:22:49,968   copying skbio/core/tree/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/tree
2021-07-09T22:22:49,972   creating build/lib.linux-armv7l-3.9/skbio/core/alignment
2021-07-09T22:22:49,973   copying skbio/core/alignment/alignment.py -> build/lib.linux-armv7l-3.9/skbio/core/alignment
2021-07-09T22:22:49,978   copying skbio/core/alignment/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/alignment
2021-07-09T22:22:49,981   creating build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:22:49,982   copying skbio/core/tests/test_sequence.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:22:49,986   copying skbio/core/tests/test_genetic_code.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:22:49,989   copying skbio/core/tests/test_distance.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:22:49,993   copying skbio/core/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:22:49,994   copying skbio/core/tests/test_workflow.py -> build/lib.linux-armv7l-3.9/skbio/core/tests
2021-07-09T22:22:49,997   creating build/lib.linux-armv7l-3.9/skbio/core/tree/tests
2021-07-09T22:22:49,998   copying skbio/core/tree/tests/test_trie.py -> build/lib.linux-armv7l-3.9/skbio/core/tree/tests
2021-07-09T22:22:50,000   copying skbio/core/tree/tests/test_tree.py -> build/lib.linux-armv7l-3.9/skbio/core/tree/tests
2021-07-09T22:22:50,003   copying skbio/core/tree/tests/test_nj.py -> build/lib.linux-armv7l-3.9/skbio/core/tree/tests
2021-07-09T22:22:50,006   copying skbio/core/tree/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/tree/tests
2021-07-09T22:22:50,008   creating build/lib.linux-armv7l-3.9/skbio/core/alignment/tests
2021-07-09T22:22:50,009   copying skbio/core/alignment/tests/test_alignment.py -> build/lib.linux-armv7l-3.9/skbio/core/alignment/tests
2021-07-09T22:22:50,012   copying skbio/core/alignment/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/alignment/tests
2021-07-09T22:22:50,014   creating build/lib.linux-armv7l-3.9/skbio/core/alignment/ssw
2021-07-09T22:22:50,015   copying skbio/core/alignment/ssw/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/alignment/ssw
2021-07-09T22:22:50,017   creating build/lib.linux-armv7l-3.9/skbio/core/alignment/ssw/tests
2021-07-09T22:22:50,018   copying skbio/core/alignment/ssw/tests/test_ssw.py -> build/lib.linux-armv7l-3.9/skbio/core/alignment/ssw/tests
2021-07-09T22:22:50,022   copying skbio/core/alignment/ssw/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/core/alignment/ssw/tests
2021-07-09T22:22:50,024   creating build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:22:50,025   copying skbio/math/tests/test_subsample.py -> build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:22:50,027   copying skbio/math/tests/test_gradient.py -> build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:22:50,031   copying skbio/math/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/tests
2021-07-09T22:22:50,034   creating build/lib.linux-armv7l-3.9/skbio/math/stats
2021-07-09T22:22:50,035   copying skbio/math/stats/spatial.py -> build/lib.linux-armv7l-3.9/skbio/math/stats
2021-07-09T22:22:50,037   copying skbio/math/stats/misc.py -> build/lib.linux-armv7l-3.9/skbio/math/stats
2021-07-09T22:22:50,039   copying skbio/math/stats/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats
2021-07-09T22:22:50,041   creating build/lib.linux-armv7l-3.9/skbio/math/diversity
2021-07-09T22:22:50,042   copying skbio/math/diversity/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity
2021-07-09T22:22:50,044   creating build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:22:50,045   copying skbio/math/stats/distance/_bioenv.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:22:50,048   copying skbio/math/stats/distance/anosim.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:22:50,049   copying skbio/math/stats/distance/base.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:22:50,052   copying skbio/math/stats/distance/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:22:50,054   copying skbio/math/stats/distance/_mantel.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:22:50,056   copying skbio/math/stats/distance/permanova.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance
2021-07-09T22:22:50,059   creating build/lib.linux-armv7l-3.9/skbio/math/stats/tests
2021-07-09T22:22:50,060   copying skbio/math/stats/tests/test_misc.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/tests
2021-07-09T22:22:50,062   copying skbio/math/stats/tests/test_spatial.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/tests
2021-07-09T22:22:50,064   copying skbio/math/stats/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/tests
2021-07-09T22:22:50,067   creating build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,067   copying skbio/math/stats/ordination/principal_coordinate_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,070   copying skbio/math/stats/ordination/canonical_correspondence_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,072   copying skbio/math/stats/ordination/correspondence_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,075   copying skbio/math/stats/ordination/base.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,077   copying skbio/math/stats/ordination/redundancy_analysis.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,080   copying skbio/math/stats/ordination/utils.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,082   copying skbio/math/stats/ordination/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination
2021-07-09T22:22:50,085   creating build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:22:50,085   copying skbio/math/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:22:50,088   copying skbio/math/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:22:50,090   copying skbio/math/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:22:50,092   copying skbio/math/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:22:50,095   copying skbio/math/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:22:50,097   copying skbio/math/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests
2021-07-09T22:22:50,100   creating build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests
2021-07-09T22:22:50,100   copying skbio/math/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests
2021-07-09T22:22:50,104   copying skbio/math/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests
2021-07-09T22:22:50,106   creating build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:22:50,107   copying skbio/math/diversity/alpha/ace.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:22:50,109   copying skbio/math/diversity/alpha/base.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:22:50,112   copying skbio/math/diversity/alpha/lladser.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:22:50,114   copying skbio/math/diversity/alpha/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:22:50,117   copying skbio/math/diversity/alpha/gini.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:22:50,119   copying skbio/math/diversity/alpha/chao1.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha
2021-07-09T22:22:50,122   creating build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:22:50,122   copying skbio/math/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:22:50,125   copying skbio/math/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:22:50,128   copying skbio/math/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:22:50,129   copying skbio/math/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:22:50,131   copying skbio/math/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:22:50,133   copying skbio/math/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/math/diversity/alpha/tests
2021-07-09T22:22:50,148   creating build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests/data
2021-07-09T22:22:50,149   copying skbio/parse/sequences/tests/data/noextensionfasta -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests/data
2021-07-09T22:22:50,151   copying skbio/parse/sequences/tests/data/fna1.qual -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests/data
2021-07-09T22:22:50,154   copying skbio/parse/sequences/tests/data/fna1.fna.gz -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests/data
2021-07-09T22:22:50,156   copying skbio/parse/sequences/tests/data/fq1.fq -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests/data
2021-07-09T22:22:50,158   copying skbio/parse/sequences/tests/data/fna1.fasta -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests/data
2021-07-09T22:22:50,160   copying skbio/parse/sequences/tests/data/fq1.fastq.gz -> build/lib.linux-armv7l-3.9/skbio/parse/sequences/tests/data
2021-07-09T22:22:50,162   creating build/lib.linux-armv7l-3.9/skbio/core/tests/data
2021-07-09T22:22:50,163   copying skbio/core/tests/data/dm_2x2_asym.txt -> build/lib.linux-armv7l-3.9/skbio/core/tests/data
2021-07-09T22:22:50,165   copying skbio/core/tests/data/dm_3x3.txt -> build/lib.linux-armv7l-3.9/skbio/core/tests/data
2021-07-09T22:22:50,167   copying skbio/core/tests/data/bad_dm.txt -> build/lib.linux-armv7l-3.9/skbio/core/tests/data
2021-07-09T22:22:50,169   creating build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,170   copying skbio/math/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,172   copying skbio/math/tests/data/vr_out -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,174   copying skbio/math/tests/data/vr_real_raw -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,176   copying skbio/math/tests/data/vr_real_out -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,178   copying skbio/math/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,180   copying skbio/math/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,182   copying skbio/math/tests/data/cr_no_data_out -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,185   copying skbio/math/tests/data/vr_raw -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,187   copying skbio/math/tests/data/cr_data_out -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,189   copying skbio/math/tests/data/cr_data_raw -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,191   copying skbio/math/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,194   copying skbio/math/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-3.9/skbio/math/tests/data
2021-07-09T22:22:50,196   creating build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,196   copying skbio/math/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,199   copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,201   copying skbio/math/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,203   copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,205   copying skbio/math/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,208   copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_too_few_permutations.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,210   copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,212   copying skbio/math/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,214   copying skbio/math/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,216   copying skbio/math/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,219   copying skbio/math/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,221   copying skbio/math/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,223   copying skbio/math/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,226   copying skbio/math/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,229   copying skbio/math/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,231   copying skbio/math/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,234   copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,236   copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-3.9/skbio/math/stats/distance/tests/data
2021-07-09T22:22:50,238   creating build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,239   copying skbio/math/stats/ordination/tests/data/error3 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,241   copying skbio/math/stats/ordination/tests/data/error1 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,244   copying skbio/math/stats/ordination/tests/data/error6 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,247   copying skbio/math/stats/ordination/tests/data/v_error4 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,249   copying skbio/math/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,252   copying skbio/math/stats/ordination/tests/data/v_error2 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,254   copying skbio/math/stats/ordination/tests/data/v_error6 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,256   copying skbio/math/stats/ordination/tests/data/v_error5 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,259   copying skbio/math/stats/ordination/tests/data/error5 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,262   copying skbio/math/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,264   copying skbio/math/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,267   copying skbio/math/stats/ordination/tests/data/example3_scores -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,269   copying skbio/math/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,272   copying skbio/math/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,274   copying skbio/math/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,276   copying skbio/math/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,278   copying skbio/math/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,281   copying skbio/math/stats/ordination/tests/data/v_error3 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,283   copying skbio/math/stats/ordination/tests/data/v_error8 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,285   copying skbio/math/stats/ordination/tests/data/exp_OrdRes_CCA_species -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,287   copying skbio/math/stats/ordination/tests/data/L&L_CA_data_scores -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,289   copying skbio/math/stats/ordination/tests/data/error4 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,292   copying skbio/math/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,294   copying skbio/math/stats/ordination/tests/data/error2 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,297   copying skbio/math/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,299   copying skbio/math/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,301   copying skbio/math/stats/ordination/tests/data/v_error7 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,303   copying skbio/math/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,305   copying skbio/math/stats/ordination/tests/data/exp_OrdRes_CCA_site_constraints -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,307   copying skbio/math/stats/ordination/tests/data/v_error1 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,309   copying skbio/math/stats/ordination/tests/data/example2_scores -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,312   copying skbio/math/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,314   copying skbio/math/stats/ordination/tests/data/v_error10 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,316   copying skbio/math/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,319   copying skbio/math/stats/ordination/tests/data/exp_OrdRes_RDA_species -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,321   copying skbio/math/stats/ordination/tests/data/exp_OrdRes_CCA_site -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,323   copying skbio/math/stats/ordination/tests/data/v_error9 -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,326   copying skbio/math/stats/ordination/tests/data/PCoA_sample_data_3_scores -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,328   copying skbio/math/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,330   copying skbio/math/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,332   copying skbio/math/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,334   copying skbio/math/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,339   copying skbio/math/stats/ordination/tests/data/exp_OrdRes_PCoA_site -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,343   copying skbio/math/stats/ordination/tests/data/exp_OrdRes_RDA_site_constraints -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,345   copying skbio/math/stats/ordination/tests/data/exp_OrdRes_RDA_site -> build/lib.linux-armv7l-3.9/skbio/math/stats/ordination/tests/data
2021-07-09T22:22:50,369   running build_ext
2021-07-09T22:22:50,376   building 'skbio.math._subsample' extension
2021-07-09T22:22:50,377   creating build/temp.linux-armv7l-3.9
2021-07-09T22:22:50,377   creating build/temp.linux-armv7l-3.9/skbio
2021-07-09T22:22:50,378   creating build/temp.linux-armv7l-3.9/skbio/math
2021-07-09T22:22:50,378   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c skbio/math/_subsample.c -o build/temp.linux-armv7l-3.9/skbio/math/_subsample.o
2021-07-09T22:22:50,776   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-09T22:22:50,776                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-09T22:22:50,776                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-09T22:22:50,777                    from skbio/math/_subsample.c:346:
2021-07-09T22:22:50,777   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-09T22:22:50,777      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-09T22:22:50,777         |  ^~~~~~~
2021-07-09T22:22:50,860   skbio/math/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-09T22:22:50,862   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,862    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,862         |                     ^
2021-07-09T22:22:50,863   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,863                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,863                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,863   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,863     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,863         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,865   skbio/math/_subsample.c:4145:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,865    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,865         |                     ^
2021-07-09T22:22:50,865   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,865                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,865                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,865   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:22:50,866     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:22:50,866         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,867   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,868    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,868         |                     ^
2021-07-09T22:22:50,868   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,868                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,868                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,868   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,868     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,868         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,870   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,870    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,870         |                     ^
2021-07-09T22:22:50,870   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,870                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,870                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,870   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,870     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,871         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,872   skbio/math/_subsample.c:4145:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,872    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,872         |                     ^
2021-07-09T22:22:50,872   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,872                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,872                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,873   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:22:50,873     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:22:50,873         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,874   skbio/math/_subsample.c:4145:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,874    4145 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,874         |                     ^
2021-07-09T22:22:50,875   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,875                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,875                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,875   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,875     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,875         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,877   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,878    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,878         |                         ^
2021-07-09T22:22:50,878   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,878                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,878                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,878   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,878     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,878         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,880   skbio/math/_subsample.c:4161:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,880    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,880         |                         ^
2021-07-09T22:22:50,880   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,880                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,880                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,880   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:22:50,880     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:22:50,880         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,882   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,882    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,882         |                         ^
2021-07-09T22:22:50,882   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,882                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,882                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,883   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,883     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,883         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,884   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,884    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,884         |                         ^
2021-07-09T22:22:50,884   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,885                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,885                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,885   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,885     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,885         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,886   skbio/math/_subsample.c:4161:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,886    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,887         |                         ^
2021-07-09T22:22:50,887   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,887                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,887                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,887   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-09T22:22:50,887     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-09T22:22:50,887         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:50,889   skbio/math/_subsample.c:4161:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-09T22:22:50,889    4161 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-09T22:22:50,889         |                         ^
2021-07-09T22:22:50,889   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-09T22:22:50,889                    from /usr/include/python3.9/Python.h:97,
2021-07-09T22:22:50,889                    from skbio/math/_subsample.c:16:
2021-07-09T22:22:50,889   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-09T22:22:50,890     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-09T22:22:50,890         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-09T22:22:51,003   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2021-07-09T22:22:51,004                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-09T22:22:51,004                    from skbio/math/_subsample.c:346:
2021-07-09T22:22:51,004   At top level:
2021-07-09T22:22:51,004   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2021-07-09T22:22:51,005    1464 | _import_array(void)
2021-07-09T22:22:51,005         | ^~~~~~~~~~~~~
2021-07-09T22:22:52,889   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/skbio/math/_subsample.o -o build/lib.linux-armv7l-3.9/skbio/math/_subsample.cpython-39-arm-linux-gnueabihf.so
2021-07-09T22:22:53,010   building 'skbio.core.alignment.ssw.ssw_wrapper' extension
2021-07-09T22:22:53,011   creating build/temp.linux-armv7l-3.9/skbio/core
2021-07-09T22:22:53,011   creating build/temp.linux-armv7l-3.9/skbio/core/alignment
2021-07-09T22:22:53,012   creating build/temp.linux-armv7l-3.9/skbio/core/alignment/ssw
2021-07-09T22:22:53,012   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c skbio/core/alignment/ssw/ssw.c -o build/temp.linux-armv7l-3.9/skbio/core/alignment/ssw/ssw.o
2021-07-09T22:22:53,065   skbio/core/alignment/ssw/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2021-07-09T22:22:53,065      38 | #include <emmintrin.h>
2021-07-09T22:22:53,065         |          ^~~~~~~~~~~~~
2021-07-09T22:22:53,066   compilation terminated.
2021-07-09T22:22:53,069   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-09T22:22:53,186   Building wheel for scikit-bio (setup.py): finished with status 'error'
2021-07-09T22:22:53,186   ERROR: Failed building wheel for scikit-bio
2021-07-09T22:22:53,187   Running setup.py clean for scikit-bio
2021-07-09T22:22:53,187   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1_mc55o0/scikit-bio_04368437952b47de8cb7a4b918dd0498/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1_mc55o0/scikit-bio_04368437952b47de8cb7a4b918dd0498/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-09T22:22:54,250   running clean
2021-07-09T22:22:54,252   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-09T22:22:54,256   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-09T22:22:54,362   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-09T22:22:54,362   'build/scripts-3.9' does not exist -- can't clean it
2021-07-09T22:22:54,363   removing 'build'
2021-07-09T22:22:54,453 Failed to build scikit-bio
2021-07-09T22:22:54,454 ERROR: Failed to build one or more wheels
2021-07-09T22:22:54,454 Exception information:
2021-07-09T22:22:54,454 Traceback (most recent call last):
2021-07-09T22:22:54,454   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-09T22:22:54,454     status = self.run(options, args)
2021-07-09T22:22:54,454   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-09T22:22:54,454     return func(self, options, args)
2021-07-09T22:22:54,454   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-09T22:22:54,454     raise CommandError(
2021-07-09T22:22:54,454 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-09T22:22:54,457 Removed build tracker: '/tmp/pip-req-tracker-zltf50k8'