2021-07-09T23:42:53,944 Created temporary directory: /tmp/pip-ephem-wheel-cache-v4rvvnb2 2021-07-09T23:42:53,947 Created temporary directory: /tmp/pip-req-tracker-1d9ijmam 2021-07-09T23:42:53,948 Initialized build tracking at /tmp/pip-req-tracker-1d9ijmam 2021-07-09T23:42:53,948 Created build tracker: /tmp/pip-req-tracker-1d9ijmam 2021-07-09T23:42:53,948 Entered build tracker: /tmp/pip-req-tracker-1d9ijmam 2021-07-09T23:42:53,949 Created temporary directory: /tmp/pip-wheel-6rvagvty 2021-07-09T23:42:53,982 1 location(s) to search for versions of pylibbvg: 2021-07-09T23:42:53,982 * https://pypi.org/simple/pylibbvg/ 2021-07-09T23:42:53,982 Fetching project page and analyzing links: https://pypi.org/simple/pylibbvg/ 2021-07-09T23:42:53,983 Getting page https://pypi.org/simple/pylibbvg/ 2021-07-09T23:42:53,984 Found index url https://pypi.org/simple 2021-07-09T23:42:54,089 Found link https://files.pythonhosted.org/packages/59/91/9866a8b1dab9f0cdd24cc0d12d5cde1f5ac1192c5627056ef6bae184b8af/pylibbvg-2.0.4.tar.gz#sha256=309b7d3cf3b84e02179d2805d326e02865843f89c31d417d31633fd68e41f442 (from https://pypi.org/simple/pylibbvg/), version: 2.0.4 2021-07-09T23:42:54,089 Found link https://files.pythonhosted.org/packages/9e/e2/8c9efcde6d611801ccdde30e82c916e150a130b4fcb486181d6e7f810025/pylibbvg-2.0.5.tar.gz#sha256=df3de3206848cf4da719de9ce1f8bea091d9f4827052893abc87f3647360614c (from https://pypi.org/simple/pylibbvg/), version: 2.0.5 2021-07-09T23:42:54,089 Found link https://files.pythonhosted.org/packages/62/c7/b87d7abd48989475e83a72c113a5a54114fb6e48e810919e73fdeed9906c/pylibbvg-2.0.6.tar.gz#sha256=4ee1dd87e47173c09005e00d4591e5d4d48930cd1ac6663ee48fb59fed96b292 (from https://pypi.org/simple/pylibbvg/), version: 2.0.6 2021-07-09T23:42:54,090 Found link https://files.pythonhosted.org/packages/8a/1a/181e6d2a223ad3a50f585243052708a4f39d8cfab84a484e675ef9120c88/pylibbvg-2.0.7.tar.gz#sha256=887d6494962ac7f65e363eddd53ec5e5f96a50cac3f9789e74c5da163977064d (from https://pypi.org/simple/pylibbvg/), version: 2.0.7 2021-07-09T23:42:54,090 Found link https://files.pythonhosted.org/packages/3d/43/7841f03c5a5bf7184925be22b85ed66e1589b51dab127206e1b0a5cea4b8/pylibbvg-2.0.8.tar.gz#sha256=e77363ae9e8ae6240540d12fde3252dc72aef69f7c53a3d5ea45a1893b66587a (from https://pypi.org/simple/pylibbvg/), version: 2.0.8 2021-07-09T23:42:54,090 Found link https://files.pythonhosted.org/packages/ca/33/3eaf7606b52cc32341aac286229e33c111c85eb53c062753120a20b1d61d/pylibbvg-2.0.9.tar.gz#sha256=0dbb0278ab8c0978c9693cace561889dc5dabe16551979d12d576acd1733cec1 (from https://pypi.org/simple/pylibbvg/), version: 2.0.9 2021-07-09T23:42:54,091 Found link https://files.pythonhosted.org/packages/64/34/65690cdce1fda15c937d6179b66e09b3b029ae57eb7d134f63fc42e7b1b6/pylibbvg-2.0.10.tar.gz#sha256=27c0f36cf1be97e47f9811de8dfd1bb01695a6889177b5e43e45ddd8ae41bdf0 (from https://pypi.org/simple/pylibbvg/), version: 2.0.10 2021-07-09T23:42:54,091 Found link https://files.pythonhosted.org/packages/c3/d9/f141eefb4c92e706ca3f989e290fde7f9e4544dba2a47ed594afd5d9538d/pylibbvg-2.0.11.tar.gz#sha256=ada3f212dbb26c0c65fc053c18aee7a6761750f836ff51dd1021a50a3f3259dd (from https://pypi.org/simple/pylibbvg/), version: 2.0.11 2021-07-09T23:42:54,091 Found link https://files.pythonhosted.org/packages/81/5a/6cb34b6bafe857935f11023d7761565cbc2d59f4183079a86f33da855027/pylibbvg-2.0.12.tar.gz#sha256=bf2b73b1ec510bd6b67e13f09c07683c36571aa0059c36aeeaf31606b32564bb (from https://pypi.org/simple/pylibbvg/), version: 2.0.12 2021-07-09T23:42:54,091 Found link https://files.pythonhosted.org/packages/40/a0/0445d95074218dcc72b80e222612ec994f9c04f46bf3aa227e00b9ae1076/pylibbvg-2.0.13.tar.gz#sha256=5e9a52381baf9c90389bbca555f4ed85cba9ad7f59b5f32115db66431848f315 (from https://pypi.org/simple/pylibbvg/), version: 2.0.13 2021-07-09T23:42:54,092 Found link https://files.pythonhosted.org/packages/30/38/2f1c4b6963b875fe61943123b687b3474a78fe1aa429e2c984d37c5b3a88/pylibbvg-2.0.14.tar.gz#sha256=872650f0600ced351a98b71d2156f56687d7dba8d69d2ddf503eaf2563972ca0 (from https://pypi.org/simple/pylibbvg/), version: 2.0.14 2021-07-09T23:42:54,092 Found link https://files.pythonhosted.org/packages/26/4f/693ee062dbf558f9176333890ec5f0fe86444d45f7e6d2e33cf0a978576f/pylibbvg-2.0.15.tar.gz#sha256=702ca1e6123764406824f9d2054c2405bbb19722cdae2399767e588f0f028996 (from https://pypi.org/simple/pylibbvg/), version: 2.0.15 2021-07-09T23:42:54,092 Found link https://files.pythonhosted.org/packages/8d/8f/ed9385611e0d0f73fcb0ce24e7beec78565200061a7515ebf4b578646300/pylibbvg-2.0.16.tar.gz#sha256=3e58dbabc987eb7cde5015b86cd35572252b8f9e6375f9bf5a036750c8c2625e (from https://pypi.org/simple/pylibbvg/), version: 2.0.16 2021-07-09T23:42:54,093 Found link https://files.pythonhosted.org/packages/7a/fa/e8eea441dddcd430ea4d31b6c92e529fb09d896c8ea3b46a3d75c9485e88/pylibbvg-2.0.17.tar.gz#sha256=5ae0698ccd2403e047240f61dd5c7649bb7c3f6f3e29dc9fc85c85f857cb01ef (from https://pypi.org/simple/pylibbvg/), version: 2.0.17 2021-07-09T23:42:54,093 Found link https://files.pythonhosted.org/packages/40/30/46e04ad7c83e11fdafb36628a93266ddbcaa5cb4ba9f2ed53966c92c58cc/pylibbvg-2.0.18.tar.gz#sha256=e0966016dd212ad6d03a4907ae8494324e8cc483d50c2ed0a2f9d1296ddfb460 (from https://pypi.org/simple/pylibbvg/), version: 2.0.18 2021-07-09T23:42:54,093 Found link https://files.pythonhosted.org/packages/ab/eb/3eb7ff98d384d8420d9bf0db191748dbe234ba19aef8f0bf4a18302c4056/pylibbvg-2.0.18.1.tar.gz#sha256=b1e3a6914106035a9d400dea943d5ae6977cbf1ca7b655533f44b0093827527e (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.1 2021-07-09T23:42:54,094 Found link https://files.pythonhosted.org/packages/a1/24/55708b83528a8b6180f75bf70282ec9c3020ea2220e3f63b1a7a1bed437e/pylibbvg-2.0.18.2.tar.gz#sha256=7dad1c86185863b8a322e9f359b15c40a302997e44bdaf4183a7471e5b01404c (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.2 2021-07-09T23:42:54,094 Found link https://files.pythonhosted.org/packages/8c/d0/9015c5fb498be89addcb3da2d556bd2b4867964b3f8b34bbef52ef2e36c0/pylibbvg-2.0.18.3.tar.gz#sha256=faca4e0b73e0bbbf8432ac957e97a1511b5f0a2cc175e8f747fbdaa3eee2dea6 (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.3 2021-07-09T23:42:54,094 Found link https://files.pythonhosted.org/packages/5d/6e/464443e689a02d41c80f2d6bd65da688aec98bae03475754c83d2a8e9442/pylibbvg-2.0.18.4.tar.gz#sha256=8ec3f2d2c741ab38d8d6bc6d5c90d53e887e36075bbfc904076b4da8e053429f (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.4 2021-07-09T23:42:54,094 Found link https://files.pythonhosted.org/packages/f0/75/9f3d36b6ddbd75a76d10c4c5677b1b43ac228f8a73202e8d3f2c7d8c4963/pylibbvg-2.0.18.5.tar.gz#sha256=250becccc4bcdca3858fe7dc8942092edac8cddb6cd7088cb6483538ee02da7b (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.5 2021-07-09T23:42:54,095 Found link https://files.pythonhosted.org/packages/87/1f/9d67eea4ceee9e64a1ae99fe0853294abf41ad1b0443a3af1e23c8b5b686/pylibbvg-2.0.18.6.tar.gz#sha256=f26bb6263f03bcfe0739fc4b251f2c96ba5bfd49e0be8836e9e2164e6aa12efb (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.6 2021-07-09T23:42:54,095 Found link https://files.pythonhosted.org/packages/ad/ff/8b6b098c16d8affcef80a19358b0b09154bd76144e6202df76515b7ee042/pylibbvg-2.0.18.7.tar.gz#sha256=76d04ddf3a7317d2b3ad819ecd927b9af086415571c15efc0dd50da2f39f5646 (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.7 2021-07-09T23:42:54,095 Found link https://files.pythonhosted.org/packages/f6/d3/c51f49a20faf2145f0e9df5b92f4cf7407c3914a325d96cb870dc8f2ebd4/pylibbvg-2.0.18.8.tar.gz#sha256=76fd7416b3637cf341851c81ca37945be8faf92c9e46323a824c0bd91a740ed1 (from https://pypi.org/simple/pylibbvg/), version: 2.0.18.8 2021-07-09T23:42:54,095 Found link https://files.pythonhosted.org/packages/93/a5/d83ecbfc953478f649b5090f8de34ca413b63355a569e9639142fd9ceeb7/pylibbvg-2.0.19.tar.gz#sha256=65e018c6f50c02156a8a4dc8dcfba5af0a94a29465933dc4c0f097813e79b343 (from https://pypi.org/simple/pylibbvg/), version: 2.0.19 2021-07-09T23:42:54,096 Found link https://files.pythonhosted.org/packages/10/2a/234c880969004a7e0ff93d2495ae5acd10244d4ed0529eafbd9e128d5082/pylibbvg-2.0.19.1.tar.gz#sha256=45104939bf6b857d7febe028e5d4fb62832b5eacf2ad36b0acc180834ddf202a (from https://pypi.org/simple/pylibbvg/), version: 2.0.19.1 2021-07-09T23:42:54,096 Found link https://files.pythonhosted.org/packages/d5/1b/5ec44326b7d7c5cba673f735cec2a39ebb802f01669f3407421491ba57fa/pylibbvg-2.0.19.2.tar.gz#sha256=0602aa73b31868362eebe5a67c57af57e33753ec5cc69e729eca81fb83e6ba10 (from https://pypi.org/simple/pylibbvg/), version: 2.0.19.2 2021-07-09T23:42:54,096 Found link https://files.pythonhosted.org/packages/6b/d2/4ad1c276f8460849996b7a809ad2b9e370e44accb3e0209848ba33b8f861/pylibbvg-2.0.19.3.tar.gz#sha256=6478559aa353c0b4ce16926327710a29ab7f79e6fe80efccd01d0a83f9913ca8 (from https://pypi.org/simple/pylibbvg/), version: 2.0.19.3 2021-07-09T23:42:54,097 Found link https://files.pythonhosted.org/packages/fe/04/32bb22ce84c6684011db9539f4d50cfe4ef20fb6455505d9ad76d032c434/pylibbvg-2.0.19.4.tar.gz#sha256=a7a5471b8ec18cf9d2989353189bbc207d44ae2f66851db93bb1da7de8dd8e0d (from https://pypi.org/simple/pylibbvg/), version: 2.0.19.4 2021-07-09T23:42:54,097 Found link https://files.pythonhosted.org/packages/9e/41/bcce106f22ce1ad2b0132c8cb6a4898824672e148ebf218965461d7a4b93/pylibbvg-2.0.19.5.tar.gz#sha256=3f401b2c4697ece6be52694bc7b0c7c5253cb7c5323bd467afa74d0247e55e08 (from https://pypi.org/simple/pylibbvg/), version: 2.0.19.5 2021-07-09T23:42:54,097 Found link https://files.pythonhosted.org/packages/b4/f4/a66a68cd6e24ecac0d47d1b6fecb228a817bcc5077e245729dacb710209e/pylibbvg-2.0.20.tar.gz#sha256=6b720133099d0bce110221ee5eaec52499806699f5ef94060f3bf175c0ec6776 (from https://pypi.org/simple/pylibbvg/), version: 2.0.20 2021-07-09T23:42:54,097 Found link https://files.pythonhosted.org/packages/ef/0c/a4cb8115f0ecc9de7af9fb60929f2b3993cfd1d4252f13dc70f48228f23b/pylibbvg-2.0.21.tar.gz#sha256=478a3f30a9dfbd9b6e553673a9f95d9145e7d76acc5708042ee067ec5dd2e8a9 (from https://pypi.org/simple/pylibbvg/), version: 2.0.21 2021-07-09T23:42:54,098 Found link https://files.pythonhosted.org/packages/3b/44/7676e09f9bc5839fcfa8dab8d46ae71215c84ccf84164ec62e2c7f145f69/pylibbvg-2.0.22.tar.gz#sha256=1f6490250dd15cf0ffb30b3fbce326e7a6b6378caffbec690871cbe30ba11f3f (from https://pypi.org/simple/pylibbvg/), version: 2.0.22 2021-07-09T23:42:54,098 Found link https://files.pythonhosted.org/packages/ab/6a/a8ef5d85769a6e42b71506146139952014ec4db396fa3a5f2837488aa388/pylibbvg-2.0.23.tar.gz#sha256=1f9c175fa4903f810cb36ce15a945a8fb050b4e440b8e8498c0b0bdd9472dea6 (from https://pypi.org/simple/pylibbvg/), version: 2.0.23 2021-07-09T23:42:54,098 Found link https://files.pythonhosted.org/packages/f1/14/dc0cf49d6900e5c01bbc42c1986c7fd8b1a6e6b49c87ae39928baef3c7b4/pylibbvg-2.0.24.tar.gz#sha256=58e6c9ca74b24dc0e8d1b1471d513f10602d161a6eeb2811f8c764cdccacbc3b (from https://pypi.org/simple/pylibbvg/), version: 2.0.24 2021-07-09T23:42:54,099 Found link https://files.pythonhosted.org/packages/9b/fc/b5451e83c05fab8d37e4500fcf2bd08f8e15398858956a55ad2854151590/pylibbvg-2.0.25.tar.gz#sha256=d2036e8f1d77fbf50eaf33503af631612e7d93a25b40e696cbff955728e7632f (from https://pypi.org/simple/pylibbvg/), version: 2.0.25 2021-07-09T23:42:54,099 Skipping link: not a file: https://pypi.org/simple/pylibbvg/ 2021-07-09T23:42:54,120 Given no hashes to check 1 links for project 'pylibbvg': discarding no candidates 2021-07-09T23:42:54,137 Collecting pylibbvg==2.0.16 2021-07-09T23:42:54,139 Created temporary directory: /tmp/pip-unpack-yabuy2oy 2021-07-09T23:42:54,330 Downloading pylibbvg-2.0.16.tar.gz (29 kB) 2021-07-09T23:42:54,383 Added pylibbvg==2.0.16 from https://files.pythonhosted.org/packages/8d/8f/ed9385611e0d0f73fcb0ce24e7beec78565200061a7515ebf4b578646300/pylibbvg-2.0.16.tar.gz#sha256=3e58dbabc987eb7cde5015b86cd35572252b8f9e6375f9bf5a036750c8c2625e to build tracker '/tmp/pip-req-tracker-1d9ijmam' 2021-07-09T23:42:54,384 Running setup.py (path:/tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881/setup.py) egg_info for package pylibbvg 2021-07-09T23:42:54,384 Created temporary directory: /tmp/pip-pip-egg-info-uh4ey4ff 2021-07-09T23:42:54,385 Running command python setup.py egg_info 2021-07-09T23:42:55,206 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-09T23:42:55,206 warnings.warn( 2021-07-09T23:42:55,222 running egg_info 2021-07-09T23:42:55,225 creating /tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info 2021-07-09T23:42:55,225 writing /tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info/PKG-INFO 2021-07-09T23:42:55,227 writing dependency_links to /tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info/dependency_links.txt 2021-07-09T23:42:55,229 writing requirements to /tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info/requires.txt 2021-07-09T23:42:55,230 writing top-level names to /tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info/top_level.txt 2021-07-09T23:42:55,232 writing manifest file '/tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info/SOURCES.txt' 2021-07-09T23:42:55,239 reading manifest file '/tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info/SOURCES.txt' 2021-07-09T23:42:55,242 writing manifest file '/tmp/pip-pip-egg-info-uh4ey4ff/pylibbvg.egg-info/SOURCES.txt' 2021-07-09T23:42:55,304 Source in /tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881 has version 2.0.16, which satisfies requirement pylibbvg==2.0.16 from https://files.pythonhosted.org/packages/8d/8f/ed9385611e0d0f73fcb0ce24e7beec78565200061a7515ebf4b578646300/pylibbvg-2.0.16.tar.gz#sha256=3e58dbabc987eb7cde5015b86cd35572252b8f9e6375f9bf5a036750c8c2625e 2021-07-09T23:42:55,305 Removed pylibbvg==2.0.16 from https://files.pythonhosted.org/packages/8d/8f/ed9385611e0d0f73fcb0ce24e7beec78565200061a7515ebf4b578646300/pylibbvg-2.0.16.tar.gz#sha256=3e58dbabc987eb7cde5015b86cd35572252b8f9e6375f9bf5a036750c8c2625e from build tracker '/tmp/pip-req-tracker-1d9ijmam' 2021-07-09T23:42:55,309 Created temporary directory: /tmp/pip-unpack-dwmqe3jj 2021-07-09T23:42:55,310 Building wheels for collected packages: pylibbvg 2021-07-09T23:42:55,314 Created temporary directory: /tmp/pip-wheel-g1boka1s 2021-07-09T23:42:55,314 Building wheel for pylibbvg (setup.py): started 2021-07-09T23:42:55,315 Destination directory: /tmp/pip-wheel-g1boka1s 2021-07-09T23:42:55,315 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-g1boka1s 2021-07-09T23:42:56,132 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-09T23:42:56,133 warnings.warn( 2021-07-09T23:42:56,167 running bdist_wheel 2021-07-09T23:42:56,171 running build 2021-07-09T23:42:56,171 running build_ext 2021-07-09T23:42:56,228 cythoning bvg.pyx to bvg.c 2021-07-09T23:42:56,819 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881/bvg.pyx 2021-07-09T23:42:56,819 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-09T23:42:57,234 Error compiling Cython file: 2021-07-09T23:42:57,234 ------------------------------------------------------------ 2021-07-09T23:42:57,235 ... 2021-07-09T23:42:57,235 # file: libbvg.pyx 2021-07-09T23:42:57,235 from libc.stdint cimport int64_t, uint64_t 2021-07-09T23:42:57,235 cimport clibbvg 2021-07-09T23:42:57,235 ^ 2021-07-09T23:42:57,235 ------------------------------------------------------------ 2021-07-09T23:42:57,236 bvg.pyx:4:8: 'clibbvg.pxd' not found 2021-07-09T23:42:57,236 Error compiling Cython file: 2021-07-09T23:42:57,237 ------------------------------------------------------------ 2021-07-09T23:42:57,237 ... 2021-07-09T23:42:57,237 >>> G = bvg.BVGraph('../../data/harvard500') # load the offset into memory 2021-07-09T23:42:57,237 >>> G = bvg.BVGraph('../../data/harvard500', 0) # load for streaming 2021-07-09T23:42:57,237 >>> G = bvg.BVGraph('../../data/harvard500', -1) # load in disk 2021-07-09T23:42:57,237 """ 2021-07-09T23:42:57,237 cdef clibbvg.bvgraph *g 2021-07-09T23:42:57,237 ^ 2021-07-09T23:42:57,238 ------------------------------------------------------------ 2021-07-09T23:42:57,238 bvg.pyx:63:9: 'bvgraph' is not a type identifier 2021-07-09T23:42:57,238 Error compiling Cython file: 2021-07-09T23:42:57,238 ------------------------------------------------------------ 2021-07-09T23:42:57,238 ... 2021-07-09T23:42:57,238 >>> G = bvg.BVGraph('../../data/harvard500', 0) # load for streaming 2021-07-09T23:42:57,239 >>> G = bvg.BVGraph('../../data/harvard500', -1) # load in disk 2021-07-09T23:42:57,239 """ 2021-07-09T23:42:57,239 cdef clibbvg.bvgraph *g 2021-07-09T23:42:57,239 cdef clibbvg.bvgraph_iterator it 2021-07-09T23:42:57,239 ^ 2021-07-09T23:42:57,239 ------------------------------------------------------------ 2021-07-09T23:42:57,240 bvg.pyx:64:9: 'bvgraph_iterator' is not a type identifier 2021-07-09T23:42:57,240 Error compiling Cython file: 2021-07-09T23:42:57,240 ------------------------------------------------------------ 2021-07-09T23:42:57,240 ... 2021-07-09T23:42:57,240 >>> G = bvg.BVGraph('../../data/harvard500', -1) # load in disk 2021-07-09T23:42:57,240 """ 2021-07-09T23:42:57,240 cdef clibbvg.bvgraph *g 2021-07-09T23:42:57,241 cdef clibbvg.bvgraph_iterator it 2021-07-09T23:42:57,241 cdef clibbvg.bvgraph_random_iterator ri 2021-07-09T23:42:57,241 ^ 2021-07-09T23:42:57,241 ------------------------------------------------------------ 2021-07-09T23:42:57,241 bvg.pyx:65:9: 'bvgraph_random_iterator' is not a type identifier 2021-07-09T23:42:57,255 Error compiling Cython file: 2021-07-09T23:42:57,255 ------------------------------------------------------------ 2021-07-09T23:42:57,255 ... 2021-07-09T23:42:57,255 """ 2021-07-09T23:42:57,255 if self.offset_step != 1: 2021-07-09T23:42:57,255 raise TypeError() 2021-07-09T23:42:57,255 cdef clibbvg.bvgraph_random_iterator rit 2021-07-09T23:42:57,256 ^ 2021-07-09T23:42:57,256 ------------------------------------------------------------ 2021-07-09T23:42:57,256 bvg.pyx:191:13: 'bvgraph_random_iterator' is not a type identifier 2021-07-09T23:42:57,257 Error compiling Cython file: 2021-07-09T23:42:57,257 ------------------------------------------------------------ 2021-07-09T23:42:57,257 ... 2021-07-09T23:42:57,258 if self.offset_step < 0: 2021-07-09T23:42:57,258 raise TypeError() 2021-07-09T23:42:57,258 # declare and initialize a new iterator 2021-07-09T23:42:57,258 cdef clibbvg.bvgraph_iterator nit 2021-07-09T23:42:57,258 ^ 2021-07-09T23:42:57,258 ------------------------------------------------------------ 2021-07-09T23:42:57,258 bvg.pyx:257:13: 'bvgraph_iterator' is not a type identifier 2021-07-09T23:42:57,259 Error compiling Cython file: 2021-07-09T23:42:57,259 ------------------------------------------------------------ 2021-07-09T23:42:57,259 ... 2021-07-09T23:42:57,259 """ 2021-07-09T23:42:57,259 if self.offset_step != 1: 2021-07-09T23:42:57,259 raise TypeError() 2021-07-09T23:42:57,260 cdef clibbvg.bvgraph_random_iterator rit 2021-07-09T23:42:57,260 ^ 2021-07-09T23:42:57,260 ------------------------------------------------------------ 2021-07-09T23:42:57,260 bvg.pyx:300:13: 'bvgraph_random_iterator' is not a type identifier 2021-07-09T23:42:57,260 Error compiling Cython file: 2021-07-09T23:42:57,260 ------------------------------------------------------------ 2021-07-09T23:42:57,261 ... 2021-07-09T23:42:57,261 """ 2021-07-09T23:42:57,261 if self.offset_step != 1: 2021-07-09T23:42:57,261 raise TypeError() 2021-07-09T23:42:57,261 cdef clibbvg.bvgraph_random_iterator ri 2021-07-09T23:42:57,261 ^ 2021-07-09T23:42:57,261 ------------------------------------------------------------ 2021-07-09T23:42:57,262 bvg.pyx:337:13: 'bvgraph_random_iterator' is not a type identifier 2021-07-09T23:42:57,262 Error compiling Cython file: 2021-07-09T23:42:57,262 ------------------------------------------------------------ 2021-07-09T23:42:57,262 ... 2021-07-09T23:42:57,263 if self.offset_step < 0: 2021-07-09T23:42:57,263 raise TypeError() 2021-07-09T23:42:57,263 # declare and initialize a new iterator 2021-07-09T23:42:57,263 cdef clibbvg.bvgraph_iterator it 2021-07-09T23:42:57,263 ^ 2021-07-09T23:42:57,263 ------------------------------------------------------------ 2021-07-09T23:42:57,264 bvg.pyx:413:13: 'bvgraph_iterator' is not a type identifier 2021-07-09T23:42:57,264 Error compiling Cython file: 2021-07-09T23:42:57,264 ------------------------------------------------------------ 2021-07-09T23:42:57,264 ... 2021-07-09T23:42:57,265 if self.offset_step < 0: 2021-07-09T23:42:57,265 raise TypeError() 2021-07-09T23:42:57,265 # declare and initialize a new iterator 2021-07-09T23:42:57,265 cdef clibbvg.bvgraph_iterator it 2021-07-09T23:42:57,265 ^ 2021-07-09T23:42:57,265 ------------------------------------------------------------ 2021-07-09T23:42:57,265 bvg.pyx:458:13: 'bvgraph_iterator' is not a type identifier 2021-07-09T23:42:57,266 Error compiling Cython file: 2021-07-09T23:42:57,266 ------------------------------------------------------------ 2021-07-09T23:42:57,266 ... 2021-07-09T23:42:57,266 if self.offset_step < 0: 2021-07-09T23:42:57,266 raise TypeError() 2021-07-09T23:42:57,267 # declare and initialize a new iterator 2021-07-09T23:42:57,267 cdef clibbvg.bvgraph_iterator nit 2021-07-09T23:42:57,267 ^ 2021-07-09T23:42:57,267 ------------------------------------------------------------ 2021-07-09T23:42:57,267 bvg.pyx:499:13: 'bvgraph_iterator' is not a type identifier 2021-07-09T23:42:57,269 Error compiling Cython file: 2021-07-09T23:42:57,269 ------------------------------------------------------------ 2021-07-09T23:42:57,269 ... 2021-07-09T23:42:57,269 if self.offset_step != 1: 2021-07-09T23:42:57,269 raise TypeError() 2021-07-09T23:42:57,269 ## iterate over node_list 2021-07-09T23:42:57,270 cdef clibbvg.bvgraph_random_iterator ri 2021-07-09T23:42:57,270 ^ 2021-07-09T23:42:57,270 ------------------------------------------------------------ 2021-07-09T23:42:57,270 bvg.pyx:586:13: 'bvgraph_random_iterator' is not a type identifier 2021-07-09T23:42:57,270 Error compiling Cython file: 2021-07-09T23:42:57,270 ------------------------------------------------------------ 2021-07-09T23:42:57,271 ... 2021-07-09T23:42:57,271 if self.offset_step < 0: 2021-07-09T23:42:57,271 raise TypeError() 2021-07-09T23:42:57,271 # declare and initialize a new iterator 2021-07-09T23:42:57,271 cdef clibbvg.bvgraph_iterator it 2021-07-09T23:42:57,271 ^ 2021-07-09T23:42:57,271 ------------------------------------------------------------ 2021-07-09T23:42:57,272 bvg.pyx:627:13: 'bvgraph_iterator' is not a type identifier 2021-07-09T23:42:57,436 Error compiling Cython file: 2021-07-09T23:42:57,436 ------------------------------------------------------------ 2021-07-09T23:42:57,436 ... 2021-07-09T23:42:57,436 1 if load the offset into memory (default, for random access) 2021-07-09T23:42:57,436 0 if do not load the offset into memory (for streaming) 2021-07-09T23:42:57,436 -1 if load in disk 2021-07-09T23:42:57,437 """ 2021-07-09T23:42:57,437 self.g = clibbvg.bvgraph_new() 2021-07-09T23:42:57,437 ^ 2021-07-09T23:42:57,437 ------------------------------------------------------------ 2021-07-09T23:42:57,437 bvg.pyx:83:24: cimported module has no attribute 'bvgraph_new' 2021-07-09T23:42:57,451 Error compiling Cython file: 2021-07-09T23:42:57,451 ------------------------------------------------------------ 2021-07-09T23:42:57,451 ... 2021-07-09T23:42:57,451 def __dealloc__(self): 2021-07-09T23:42:57,451 """Deallocate memory of BVGraph object. 2021-07-09T23:42:57,452 """ 2021-07-09T23:42:57,452 if self.g is not NULL: 2021-07-09T23:42:57,452 clibbvg.bvgraph_free(self.g) 2021-07-09T23:42:57,452 ^ 2021-07-09T23:42:57,452 ------------------------------------------------------------ 2021-07-09T23:42:57,452 bvg.pyx:109:19: cimported module has no attribute 'bvgraph_free' 2021-07-09T23:42:57,455 Error compiling Cython file: 2021-07-09T23:42:57,455 ------------------------------------------------------------ 2021-07-09T23:42:57,455 ... 2021-07-09T23:42:57,455 cdef uint64_t degree 2021-07-09T23:42:57,455 rval = clibbvg.bvgraph_random_access_iterator(self.g, &rit) 2021-07-09T23:42:57,455 if rval != 0: 2021-07-09T23:42:57,455 raise MemoryError() 2021-07-09T23:42:57,456 rval = clibbvg.bvgraph_random_successors(&rit, x, &successors, °ree) 2021-07-09T23:42:57,456 ^ 2021-07-09T23:42:57,456 ------------------------------------------------------------ 2021-07-09T23:42:57,456 bvg.pyx:198:22: cimported module has no attribute 'bvgraph_random_successors' 2021-07-09T23:42:57,467 Error compiling Cython file: 2021-07-09T23:42:57,467 ------------------------------------------------------------ 2021-07-09T23:42:57,467 ... 2021-07-09T23:42:57,467 cdef uint64_t degree 2021-07-09T23:42:57,468 rval = clibbvg.bvgraph_random_access_iterator(self.g, &rit) 2021-07-09T23:42:57,468 if rval != 0: 2021-07-09T23:42:57,468 raise MemoryError() 2021-07-09T23:42:57,468 rval = clibbvg.bvgraph_random_successors(&rit, x, &successors, °ree) 2021-07-09T23:42:57,468 ^ 2021-07-09T23:42:57,468 ------------------------------------------------------------ 2021-07-09T23:42:57,469 bvg.pyx:198:22: Compiler crash in AnalyseExpressionsTransform 2021-07-09T23:42:57,469 ModuleNode.body = StatListNode(bvg.pyx:3:0) 2021-07-09T23:42:57,469 StatListNode.stats[2] = StatListNode(bvg.pyx:46:5) 2021-07-09T23:42:57,469 StatListNode.stats[0] = CClassDefNode(bvg.pyx:46:5, 2021-07-09T23:42:57,470 as_name = 'BVGraph', 2021-07-09T23:42:57,470 class_name = 'BVGraph', 2021-07-09T23:42:57,470 doc = "Base class for Boldi-Vigna compressed graph.\n\n Parameters:\n filename: the filename of bvgraph without the extension.\n (Example: '../../data/harvard500')\n offset_step: load the graph with different ways.\n 1 if load the offset into memory (default, for random access)\n 0 if do not load the offset into memory (for streaming)\n -1 if load in disk\n\n Example:\n >>> G = bvg.BVGraph('../../data/harvard500') # load the offset into memory\n >>> G = bvg.BVGraph('../../data/harvard500', 0) # load for streaming\n >>> G = bvg.BVGraph('../../data/harvard500', -1) # load in disk\n\n ", 2021-07-09T23:42:57,470 module_name = '', 2021-07-09T23:42:57,470 visibility = 'private') 2021-07-09T23:42:57,470 CClassDefNode.body = StatListNode(bvg.pyx:47:4) 2021-07-09T23:42:57,471 StatListNode.stats[8] = DefNode(bvg.pyx:173:4, 2021-07-09T23:42:57,471 doc = 'Random access to certain node x.\n\n Parameter:\n x: given node number\n\n Return a successor list of x.\n\n Example:\n >>> a = G.successors(x)\n >>> for v in a:\n ... # v is a successor list of x\n\n ', 2021-07-09T23:42:57,471 modifiers = [...]/0, 2021-07-09T23:42:57,471 name = 'successors', 2021-07-09T23:42:57,471 np_args_idx = [...]/0, 2021-07-09T23:42:57,471 num_required_args = 2, 2021-07-09T23:42:57,471 outer_attrs = [...]/2, 2021-07-09T23:42:57,471 py_wrapper_required = True, 2021-07-09T23:42:57,472 reqd_kw_flags_cname = '0', 2021-07-09T23:42:57,472 used = True) 2021-07-09T23:42:57,472 File 'ExprNodes.py', line 5362, in infer_type: SimpleCallNode(bvg.pyx:198:48, 2021-07-09T23:42:57,472 result_is_used = True, 2021-07-09T23:42:57,472 use_managed_ref = True) 2021-07-09T23:42:57,472 File 'ExprNodes.py', line 6845, in infer_type: AttributeNode(bvg.pyx:198:22, 2021-07-09T23:42:57,472 attribute = 'bvgraph_random_successors', 2021-07-09T23:42:57,472 is_attribute = 1, 2021-07-09T23:42:57,472 needs_none_check = True, 2021-07-09T23:42:57,473 result_is_used = True, 2021-07-09T23:42:57,473 use_managed_ref = True) 2021-07-09T23:42:57,473 Compiler crash traceback from this point on: 2021-07-09T23:42:57,473 File "/usr/local/lib/python3.9/dist-packages/Cython/Compiler/ExprNodes.py", line 6845, in infer_type 2021-07-09T23:42:57,473 if node.entry.type and node.entry.type.is_cfunction: 2021-07-09T23:42:57,473 AttributeError: 'NoneType' object has no attribute 'type' 2021-07-09T23:42:57,474 building 'bvg' extension 2021-07-09T23:42:57,474 creating build 2021-07-09T23:42:57,474 creating build/temp.linux-armv7l-3.9 2021-07-09T23:42:57,474 creating build/temp.linux-armv7l-3.9/src 2021-07-09T23:42:57,475 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881/include/ -I/usr/include/python3.9 -c ./src/bitfile.c -o build/temp.linux-armv7l-3.9/./src/bitfile.o 2021-07-09T23:42:57,581 ./src/bitfile.c:26:10: fatal error: bitfile.h: No such file or directory 2021-07-09T23:42:57,581 26 | #include "bitfile.h" 2021-07-09T23:42:57,581 | ^~~~~~~~~~~ 2021-07-09T23:42:57,582 compilation terminated. 2021-07-09T23:42:57,585 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-09T23:42:57,722 Building wheel for pylibbvg (setup.py): finished with status 'error' 2021-07-09T23:42:57,723 ERROR: Failed building wheel for pylibbvg 2021-07-09T23:42:57,724 Running setup.py clean for pylibbvg 2021-07-09T23:42:57,724 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6rvagvty/pylibbvg_553cb7edb5ce4774a86778db144bc881/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-09T23:42:58,552 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-09T23:42:58,553 warnings.warn( 2021-07-09T23:42:58,560 running clean 2021-07-09T23:42:58,561 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-09T23:42:58,563 'build/lib.linux-armv7l-3.9' does not exist -- can't clean it 2021-07-09T23:42:58,564 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-09T23:42:58,564 'build/scripts-3.9' does not exist -- can't clean it 2021-07-09T23:42:58,564 removing 'build' 2021-07-09T23:42:58,564 removing bvg.c 2021-07-09T23:42:58,622 Failed to build pylibbvg 2021-07-09T23:42:58,623 ERROR: Failed to build one or more wheels 2021-07-09T23:42:58,623 Exception information: 2021-07-09T23:42:58,623 Traceback (most recent call last): 2021-07-09T23:42:58,623 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-09T23:42:58,623 status = self.run(options, args) 2021-07-09T23:42:58,623 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-09T23:42:58,623 return func(self, options, args) 2021-07-09T23:42:58,623 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-09T23:42:58,623 raise CommandError( 2021-07-09T23:42:58,623 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-09T23:42:58,626 Removed build tracker: '/tmp/pip-req-tracker-1d9ijmam'