2021-07-09T23:58:43,446 Created temporary directory: /tmp/pip-ephem-wheel-cache-82_2j6if 2021-07-09T23:58:43,451 Created temporary directory: /tmp/pip-req-tracker-aumeqpug 2021-07-09T23:58:43,452 Initialized build tracking at /tmp/pip-req-tracker-aumeqpug 2021-07-09T23:58:43,452 Created build tracker: /tmp/pip-req-tracker-aumeqpug 2021-07-09T23:58:43,452 Entered build tracker: /tmp/pip-req-tracker-aumeqpug 2021-07-09T23:58:43,454 Created temporary directory: /tmp/pip-wheel-7x8kvbmx 2021-07-09T23:58:43,497 1 location(s) to search for versions of biom-format: 2021-07-09T23:58:43,497 * https://pypi.org/simple/biom-format/ 2021-07-09T23:58:43,498 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-09T23:58:43,498 Getting page https://pypi.org/simple/biom-format/ 2021-07-09T23:58:43,500 Found index url https://pypi.org/simple 2021-07-09T23:58:43,687 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-09T23:58:43,687 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-09T23:58:43,688 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-09T23:58:43,688 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-09T23:58:43,688 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-09T23:58:43,689 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-09T23:58:43,689 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-09T23:58:43,689 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-09T23:58:43,690 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-09T23:58:43,690 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-09T23:58:43,690 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-09T23:58:43,690 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-09T23:58:43,706 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-09T23:58:43,706 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-09T23:58:43,707 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-09T23:58:43,707 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-09T23:58:43,708 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-09T23:58:43,708 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-09T23:58:43,708 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-09T23:58:43,711 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-09T23:58:43,729 Collecting biom-format==2.1 2021-07-09T23:58:43,730 Created temporary directory: /tmp/pip-unpack-dznnhtfx 2021-07-09T23:58:44,249 Downloading biom-format-2.1.tar.gz (915 kB) 2021-07-09T23:58:45,576 Added biom-format==2.1 from https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd to build tracker '/tmp/pip-req-tracker-aumeqpug' 2021-07-09T23:58:45,577 Running setup.py (path:/tmp/pip-wheel-7x8kvbmx/biom-format_dcc191110ac645afb49ef51d3d6a8952/setup.py) egg_info for package biom-format 2021-07-09T23:58:45,577 Created temporary directory: /tmp/pip-pip-egg-info-y5biau5x 2021-07-09T23:58:45,578 Running command python setup.py egg_info 2021-07-09T23:58:46,651 running egg_info 2021-07-09T23:58:46,654 creating /tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info 2021-07-09T23:58:46,655 writing /tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info/PKG-INFO 2021-07-09T23:58:46,657 writing dependency_links to /tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info/dependency_links.txt 2021-07-09T23:58:46,659 writing requirements to /tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info/requires.txt 2021-07-09T23:58:46,660 writing top-level names to /tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info/top_level.txt 2021-07-09T23:58:46,662 writing manifest file '/tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info/SOURCES.txt' 2021-07-09T23:58:47,037 reading manifest file '/tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info/SOURCES.txt' 2021-07-09T23:58:47,038 reading manifest template 'MANIFEST.in' 2021-07-09T23:58:47,085 no previously-included directories found matching 'docs/_build' 2021-07-09T23:58:47,086 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-09T23:58:47,088 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-09T23:58:47,090 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-09T23:58:47,090 adding license file 'COPYING.txt' 2021-07-09T23:58:47,110 writing manifest file '/tmp/pip-pip-egg-info-y5biau5x/biom_format.egg-info/SOURCES.txt' 2021-07-09T23:58:47,217 Source in /tmp/pip-wheel-7x8kvbmx/biom-format_dcc191110ac645afb49ef51d3d6a8952 has version 2.1, which satisfies requirement biom-format==2.1 from https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd 2021-07-09T23:58:47,218 Removed biom-format==2.1 from https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd from build tracker '/tmp/pip-req-tracker-aumeqpug' 2021-07-09T23:58:47,222 Created temporary directory: /tmp/pip-unpack-ephg11ut 2021-07-09T23:58:47,223 Building wheels for collected packages: biom-format 2021-07-09T23:58:47,227 Created temporary directory: /tmp/pip-wheel-ewdfey21 2021-07-09T23:58:47,228 Building wheel for biom-format (setup.py): started 2021-07-09T23:58:47,228 Destination directory: /tmp/pip-wheel-ewdfey21 2021-07-09T23:58:47,228 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7x8kvbmx/biom-format_dcc191110ac645afb49ef51d3d6a8952/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7x8kvbmx/biom-format_dcc191110ac645afb49ef51d3d6a8952/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ewdfey21 2021-07-09T23:58:48,295 running bdist_wheel 2021-07-09T23:58:48,491 running build 2021-07-09T23:58:48,491 running build_py 2021-07-09T23:58:48,632 creating build 2021-07-09T23:58:48,632 creating build/lib.linux-armv7l-3.9 2021-07-09T23:58:48,633 creating build/lib.linux-armv7l-3.9/biom 2021-07-09T23:58:48,634 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T23:58:48,637 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T23:58:48,640 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T23:58:48,642 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T23:58:48,646 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T23:58:48,648 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-09T23:58:48,651 creating build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,652 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,656 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,658 copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,660 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,662 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,665 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,667 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-09T23:58:48,671 creating build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-09T23:58:48,672 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-09T23:58:48,674 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T23:58:48,675 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T23:58:48,678 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T23:58:48,679 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-09T23:58:48,682 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,683 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,685 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,688 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,690 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,692 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,694 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,696 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-09T23:58:48,698 creating build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T23:58:48,699 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T23:58:48,701 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T23:58:48,703 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-09T23:58:48,706 creating build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T23:58:48,707 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T23:58:48,709 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T23:58:48,711 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T23:58:48,713 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T23:58:48,715 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T23:58:48,717 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-09T23:58:48,725 running build_ext 2021-07-09T23:58:48,732 building 'biom._filter' extension 2021-07-09T23:58:48,733 creating build/temp.linux-armv7l-3.9 2021-07-09T23:58:48,733 creating build/temp.linux-armv7l-3.9/biom 2021-07-09T23:58:48,734 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-09T23:58:49,158 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T23:58:49,158 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T23:58:49,158 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T23:58:49,158 from biom/_filter.c:346: 2021-07-09T23:58:49,159 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T23:58:49,159 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T23:58:49,159 | ^~~~~~~ 2021-07-09T23:58:49,341 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T23:58:49,344 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,344 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,344 | ^ 2021-07-09T23:58:49,345 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,345 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,346 from biom/_filter.c:16: 2021-07-09T23:58:49,346 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,346 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,349 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,349 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,349 | ^ 2021-07-09T23:58:49,349 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,350 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,350 from biom/_filter.c:16: 2021-07-09T23:58:49,350 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:49,350 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:49,350 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,353 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,353 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,353 | ^ 2021-07-09T23:58:49,353 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,354 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,354 from biom/_filter.c:16: 2021-07-09T23:58:49,354 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,354 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,354 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,357 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,357 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,357 | ^ 2021-07-09T23:58:49,357 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,358 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,358 from biom/_filter.c:16: 2021-07-09T23:58:49,358 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,358 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,358 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,361 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,361 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,361 | ^ 2021-07-09T23:58:49,361 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,361 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,362 from biom/_filter.c:16: 2021-07-09T23:58:49,362 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:49,362 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:49,362 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,365 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,365 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,365 | ^ 2021-07-09T23:58:49,365 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,365 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,365 from biom/_filter.c:16: 2021-07-09T23:58:49,366 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,366 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,366 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,370 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,370 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,370 | ^ 2021-07-09T23:58:49,370 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,370 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,371 from biom/_filter.c:16: 2021-07-09T23:58:49,371 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,371 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,371 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,374 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,374 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,374 | ^ 2021-07-09T23:58:49,374 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,374 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,374 from biom/_filter.c:16: 2021-07-09T23:58:49,374 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:49,375 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:49,375 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,378 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,378 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,378 | ^ 2021-07-09T23:58:49,378 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,378 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,378 from biom/_filter.c:16: 2021-07-09T23:58:49,378 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,378 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,379 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,382 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,382 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,382 | ^ 2021-07-09T23:58:49,382 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,382 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,382 from biom/_filter.c:16: 2021-07-09T23:58:49,382 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,382 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,382 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,385 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,386 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,386 | ^ 2021-07-09T23:58:49,386 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,386 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,386 from biom/_filter.c:16: 2021-07-09T23:58:49,386 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:49,386 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:49,386 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,389 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:49,389 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:49,390 | ^ 2021-07-09T23:58:49,390 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:49,390 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:49,390 from biom/_filter.c:16: 2021-07-09T23:58:49,390 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:49,390 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:49,390 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:49,506 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T23:58:49,506 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T23:58:49,506 from biom/_filter.c:346: 2021-07-09T23:58:49,506 At top level: 2021-07-09T23:58:49,507 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T23:58:49,507 1464 | _import_array(void) 2021-07-09T23:58:49,507 | ^~~~~~~~~~~~~ 2021-07-09T23:58:54,732 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-09T23:58:54,864 building 'biom._transform' extension 2021-07-09T23:58:54,864 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-09T23:58:55,238 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T23:58:55,238 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T23:58:55,238 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T23:58:55,238 from biom/_transform.c:346: 2021-07-09T23:58:55,238 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T23:58:55,238 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T23:58:55,239 | ^~~~~~~ 2021-07-09T23:58:55,317 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T23:58:55,319 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,319 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,319 | ^ 2021-07-09T23:58:55,320 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,320 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,320 from biom/_transform.c:16: 2021-07-09T23:58:55,320 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,320 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,320 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,322 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,322 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,322 | ^ 2021-07-09T23:58:55,322 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,322 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,322 from biom/_transform.c:16: 2021-07-09T23:58:55,323 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:55,323 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:55,323 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,324 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,324 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,324 | ^ 2021-07-09T23:58:55,324 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,324 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,325 from biom/_transform.c:16: 2021-07-09T23:58:55,325 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,325 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,325 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,326 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,326 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,326 | ^ 2021-07-09T23:58:55,327 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,327 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,327 from biom/_transform.c:16: 2021-07-09T23:58:55,327 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,327 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,327 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,328 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,328 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,329 | ^ 2021-07-09T23:58:55,329 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,329 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,329 from biom/_transform.c:16: 2021-07-09T23:58:55,329 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:55,329 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:55,329 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,331 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,331 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,331 | ^ 2021-07-09T23:58:55,331 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,331 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,331 from biom/_transform.c:16: 2021-07-09T23:58:55,331 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,331 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,332 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,334 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,334 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,334 | ^ 2021-07-09T23:58:55,334 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,334 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,334 from biom/_transform.c:16: 2021-07-09T23:58:55,334 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,334 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,335 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,336 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,336 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,336 | ^ 2021-07-09T23:58:55,336 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,336 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,336 from biom/_transform.c:16: 2021-07-09T23:58:55,336 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:55,337 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:55,337 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,338 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,338 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,338 | ^ 2021-07-09T23:58:55,338 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,338 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,339 from biom/_transform.c:16: 2021-07-09T23:58:55,339 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,339 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,339 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,340 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,340 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,340 | ^ 2021-07-09T23:58:55,341 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,341 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,341 from biom/_transform.c:16: 2021-07-09T23:58:55,341 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,341 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,341 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,342 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,342 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,343 | ^ 2021-07-09T23:58:55,343 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,343 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,343 from biom/_transform.c:16: 2021-07-09T23:58:55,343 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:55,343 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:55,343 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,344 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:55,345 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:55,345 | ^ 2021-07-09T23:58:55,345 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:55,345 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:55,345 from biom/_transform.c:16: 2021-07-09T23:58:55,345 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:55,345 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:55,345 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:55,459 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T23:58:55,459 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T23:58:55,460 from biom/_transform.c:346: 2021-07-09T23:58:55,460 At top level: 2021-07-09T23:58:55,460 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T23:58:55,460 1464 | _import_array(void) 2021-07-09T23:58:55,461 | ^~~~~~~~~~~~~ 2021-07-09T23:58:57,145 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-09T23:58:57,260 building 'biom._subsample' extension 2021-07-09T23:58:57,261 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-09T23:58:57,633 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-09T23:58:57,633 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-09T23:58:57,633 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T23:58:57,633 from biom/_subsample.c:352: 2021-07-09T23:58:57,633 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-09T23:58:57,634 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-09T23:58:57,634 | ^~~~~~~ 2021-07-09T23:58:57,724 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-09T23:58:57,726 biom/_subsample.c:4418:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,726 4418 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,726 | ^ 2021-07-09T23:58:57,726 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,727 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,727 from biom/_subsample.c:16: 2021-07-09T23:58:57,727 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,727 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,727 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,729 biom/_subsample.c:4418:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,729 4418 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,729 | ^ 2021-07-09T23:58:57,729 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,729 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,729 from biom/_subsample.c:16: 2021-07-09T23:58:57,730 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:57,730 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:57,730 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,731 biom/_subsample.c:4418:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,732 4418 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,732 | ^ 2021-07-09T23:58:57,732 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,732 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,732 from biom/_subsample.c:16: 2021-07-09T23:58:57,732 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,732 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,732 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,734 biom/_subsample.c:4418:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,734 4418 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,734 | ^ 2021-07-09T23:58:57,734 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,734 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,735 from biom/_subsample.c:16: 2021-07-09T23:58:57,735 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,735 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,735 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,736 biom/_subsample.c:4418:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,736 4418 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,737 | ^ 2021-07-09T23:58:57,737 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,737 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,737 from biom/_subsample.c:16: 2021-07-09T23:58:57,737 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:57,737 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:57,737 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,739 biom/_subsample.c:4418:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,739 4418 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,739 | ^ 2021-07-09T23:58:57,739 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,739 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,739 from biom/_subsample.c:16: 2021-07-09T23:58:57,740 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,740 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,740 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,742 biom/_subsample.c:4434:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,742 4434 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,743 | ^ 2021-07-09T23:58:57,743 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,743 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,743 from biom/_subsample.c:16: 2021-07-09T23:58:57,743 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,743 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,743 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,745 biom/_subsample.c:4434:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,745 4434 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,745 | ^ 2021-07-09T23:58:57,745 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,745 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,745 from biom/_subsample.c:16: 2021-07-09T23:58:57,745 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:57,745 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:57,746 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,747 biom/_subsample.c:4434:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,747 4434 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,747 | ^ 2021-07-09T23:58:57,747 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,748 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,748 from biom/_subsample.c:16: 2021-07-09T23:58:57,748 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,748 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,748 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,749 biom/_subsample.c:4434:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,750 4434 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,750 | ^ 2021-07-09T23:58:57,750 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,750 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,750 from biom/_subsample.c:16: 2021-07-09T23:58:57,750 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,750 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,750 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,752 biom/_subsample.c:4434:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,752 4434 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,752 | ^ 2021-07-09T23:58:57,752 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,752 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,753 from biom/_subsample.c:16: 2021-07-09T23:58:57,753 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-09T23:58:57,753 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-09T23:58:57,753 | ^~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,754 biom/_subsample.c:4434:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-09T23:58:57,754 4434 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-09T23:58:57,755 | ^ 2021-07-09T23:58:57,755 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-09T23:58:57,755 from /usr/include/python3.9/Python.h:97, 2021-07-09T23:58:57,755 from biom/_subsample.c:16: 2021-07-09T23:58:57,755 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-09T23:58:57,755 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-09T23:58:57,755 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-09T23:58:57,885 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-09T23:58:57,885 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-09T23:58:57,885 from biom/_subsample.c:352: 2021-07-09T23:58:57,885 At top level: 2021-07-09T23:58:57,886 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-09T23:58:57,886 1464 | _import_array(void) 2021-07-09T23:58:57,886 | ^~~~~~~~~~~~~ 2021-07-09T23:59:00,958 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-09T23:59:01,080 running build_scripts 2021-07-09T23:59:01,080 creating build/scripts-3.9 2021-07-09T23:59:01,082 copying scripts/serve-biom -> build/scripts-3.9 2021-07-09T23:59:01,084 copying scripts/biom -> build/scripts-3.9 2021-07-09T23:59:01,086 changing mode of build/scripts-3.9/serve-biom from 644 to 755 2021-07-09T23:59:01,094 installing to build/bdist.linux-armv7l/wheel 2021-07-09T23:59:01,095 running install 2021-07-09T23:59:01,096 running install_lib 2021-07-09T23:59:01,100 creating build/bdist.linux-armv7l 2021-07-09T23:59:01,101 creating build/bdist.linux-armv7l/wheel 2021-07-09T23:59:01,102 creating build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,103 copying build/lib.linux-armv7l-3.9/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,106 copying build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,117 copying build/lib.linux-armv7l-3.9/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,120 copying build/lib.linux-armv7l-3.9/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,123 creating build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-09T23:59:01,124 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T23:59:01,125 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T23:59:01,128 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T23:59:01,130 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-09T23:59:01,133 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,134 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,137 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,140 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,142 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,145 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/subset_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,147 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,150 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-09T23:59:01,152 copying build/lib.linux-armv7l-3.9/biom/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-09T23:59:01,155 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T23:59:01,156 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T23:59:01,158 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T23:59:01,160 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-09T23:59:01,162 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T23:59:01,163 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T23:59:01,166 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T23:59:01,168 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T23:59:01,170 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T23:59:01,172 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T23:59:01,174 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-09T23:59:01,177 copying build/lib.linux-armv7l-3.9/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,185 copying build/lib.linux-armv7l-3.9/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,188 creating build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,189 copying build/lib.linux-armv7l-3.9/biom/commands/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,191 copying build/lib.linux-armv7l-3.9/biom/commands/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,194 copying build/lib.linux-armv7l-3.9/biom/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,195 copying build/lib.linux-armv7l-3.9/biom/commands/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,198 copying build/lib.linux-armv7l-3.9/biom/commands/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,201 copying build/lib.linux-armv7l-3.9/biom/commands/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,203 copying build/lib.linux-armv7l-3.9/biom/commands/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-09T23:59:01,207 copying build/lib.linux-armv7l-3.9/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,210 copying build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,221 copying build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-09T23:59:01,228 running install_egg_info 2021-07-09T23:59:01,253 running egg_info 2021-07-09T23:59:01,253 writing biom_format.egg-info/PKG-INFO 2021-07-09T23:59:01,255 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-09T23:59:01,257 writing requirements to biom_format.egg-info/requires.txt 2021-07-09T23:59:01,259 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-09T23:59:01,275 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-09T23:59:01,364 reading manifest template 'MANIFEST.in' 2021-07-09T23:59:01,399 no previously-included directories found matching 'docs/_build' 2021-07-09T23:59:01,402 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-09T23:59:01,405 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-09T23:59:01,407 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-09T23:59:01,407 adding license file 'COPYING.txt' 2021-07-09T23:59:01,439 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-09T23:59:01,442 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1-py3.9.egg-info 2021-07-09T23:59:01,455 running install_scripts 2021-07-09T23:59:01,542 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.data 2021-07-09T23:59:01,543 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.data/scripts 2021-07-09T23:59:01,544 copying build/scripts-3.9/serve-biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.data/scripts 2021-07-09T23:59:01,546 copying build/scripts-3.9/biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.data/scripts 2021-07-09T23:59:01,547 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.data/scripts/serve-biom to 755 2021-07-09T23:59:01,547 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.data/scripts/biom to 755 2021-07-09T23:59:01,573 adding license file "COPYING.txt" (matched pattern "COPYING*") 2021-07-09T23:59:01,577 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.dist-info/WHEEL 2021-07-09T23:59:01,580 creating '/tmp/pip-wheel-ewdfey21/biom_format-2.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-09T23:59:01,582 adding 'biom/__init__.py' 2021-07-09T23:59:01,662 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T23:59:01,707 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T23:59:01,734 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2021-07-09T23:59:01,738 adding 'biom/err.py' 2021-07-09T23:59:01,739 adding 'biom/exception.py' 2021-07-09T23:59:01,742 adding 'biom/parse.py' 2021-07-09T23:59:01,758 adding 'biom/table.py' 2021-07-09T23:59:01,761 adding 'biom/util.py' 2021-07-09T23:59:01,763 adding 'biom/commands/__init__.py' 2021-07-09T23:59:01,764 adding 'biom/commands/installation_informer.py' 2021-07-09T23:59:01,766 adding 'biom/commands/metadata_adder.py' 2021-07-09T23:59:01,767 adding 'biom/commands/table_converter.py' 2021-07-09T23:59:01,769 adding 'biom/commands/table_subsetter.py' 2021-07-09T23:59:01,770 adding 'biom/commands/table_summarizer.py' 2021-07-09T23:59:01,773 adding 'biom/commands/table_validator.py' 2021-07-09T23:59:01,774 adding 'biom/interfaces/__init__.py' 2021-07-09T23:59:01,776 adding 'biom/interfaces/html/__init__.py' 2021-07-09T23:59:01,777 adding 'biom/interfaces/html/input_handler.py' 2021-07-09T23:59:01,778 adding 'biom/interfaces/html/output_handler.py' 2021-07-09T23:59:01,780 adding 'biom/interfaces/html/config/__init__.py' 2021-07-09T23:59:01,781 adding 'biom/interfaces/html/config/add_metadata.py' 2021-07-09T23:59:01,782 adding 'biom/interfaces/html/config/convert.py' 2021-07-09T23:59:01,784 adding 'biom/interfaces/html/config/show_install_info.py' 2021-07-09T23:59:01,785 adding 'biom/interfaces/html/config/summarize_table.py' 2021-07-09T23:59:01,786 adding 'biom/interfaces/html/config/validate_table.py' 2021-07-09T23:59:01,788 adding 'biom/interfaces/optparse/__init__.py' 2021-07-09T23:59:01,789 adding 'biom/interfaces/optparse/input_handler.py' 2021-07-09T23:59:01,790 adding 'biom/interfaces/optparse/output_handler.py' 2021-07-09T23:59:01,792 adding 'biom/interfaces/optparse/config/__init__.py' 2021-07-09T23:59:01,794 adding 'biom/interfaces/optparse/config/add_metadata.py' 2021-07-09T23:59:01,795 adding 'biom/interfaces/optparse/config/convert.py' 2021-07-09T23:59:01,796 adding 'biom/interfaces/optparse/config/show_install_info.py' 2021-07-09T23:59:01,797 adding 'biom/interfaces/optparse/config/subset_table.py' 2021-07-09T23:59:01,799 adding 'biom/interfaces/optparse/config/summarize_table.py' 2021-07-09T23:59:01,800 adding 'biom/interfaces/optparse/config/validate_table.py' 2021-07-09T23:59:01,802 adding 'biom_format-2.1.data/scripts/biom' 2021-07-09T23:59:01,804 adding 'biom_format-2.1.data/scripts/serve-biom' 2021-07-09T23:59:01,806 adding 'biom_format-2.1.dist-info/COPYING.txt' 2021-07-09T23:59:01,807 adding 'biom_format-2.1.dist-info/METADATA' 2021-07-09T23:59:01,808 adding 'biom_format-2.1.dist-info/WHEEL' 2021-07-09T23:59:01,809 adding 'biom_format-2.1.dist-info/top_level.txt' 2021-07-09T23:59:01,810 adding 'biom_format-2.1.dist-info/RECORD' 2021-07-09T23:59:01,817 removing build/bdist.linux-armv7l/wheel 2021-07-09T23:59:01,957 Building wheel for biom-format (setup.py): finished with status 'done' 2021-07-09T23:59:01,963 Created wheel for biom-format: filename=biom_format-2.1-cp39-cp39-linux_armv7l.whl size=361080 sha256=04f3a0c8fe42dbbaffb498aada51a9b035b206ba20bb943d4e5fc3413120b7d3 2021-07-09T23:59:01,963 Stored in directory: /tmp/pip-ephem-wheel-cache-82_2j6if/wheels/53/1c/9a/51e68a5fdb596064b4540b9054e1fa3550cde3e23afbf18221 2021-07-09T23:59:01,974 Successfully built biom-format 2021-07-09T23:59:01,991 Removed build tracker: '/tmp/pip-req-tracker-aumeqpug'