2021-07-10T01:03:33,564 Created temporary directory: /tmp/pip-ephem-wheel-cache-1ei9ljpp 2021-07-10T01:03:33,567 Created temporary directory: /tmp/pip-req-tracker-mcoievhe 2021-07-10T01:03:33,568 Initialized build tracking at /tmp/pip-req-tracker-mcoievhe 2021-07-10T01:03:33,568 Created build tracker: /tmp/pip-req-tracker-mcoievhe 2021-07-10T01:03:33,568 Entered build tracker: /tmp/pip-req-tracker-mcoievhe 2021-07-10T01:03:33,569 Created temporary directory: /tmp/pip-wheel-7tn9p2x3 2021-07-10T01:03:33,604 1 location(s) to search for versions of rnacounter: 2021-07-10T01:03:33,604 * https://pypi.org/simple/rnacounter/ 2021-07-10T01:03:33,605 Fetching project page and analyzing links: https://pypi.org/simple/rnacounter/ 2021-07-10T01:03:33,605 Getting page https://pypi.org/simple/rnacounter/ 2021-07-10T01:03:33,607 Found index url https://pypi.org/simple 2021-07-10T01:03:33,794 Found link https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 (from https://pypi.org/simple/rnacounter/), version: 1.1.2 2021-07-10T01:03:33,794 Found link https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a (from https://pypi.org/simple/rnacounter/), version: 1.1.3.1 2021-07-10T01:03:33,795 Found link https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.2 2021-07-10T01:03:33,795 Found link https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.7 2021-07-10T01:03:33,795 Found link https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.10 2021-07-10T01:03:33,795 Found link https://files.pythonhosted.org/packages/8a/5e/1b112fc6343bf52ace3a9afaa30eabaf4338afadabf1fb97454a7556b835/rnacounter-1.2.tar.gz#sha256=d63cb98d0aa90339c2dbe27741a361f9778e9617585e04a35d078421e364ba0d (from https://pypi.org/simple/rnacounter/), version: 1.2 2021-07-10T01:03:33,796 Found link https://files.pythonhosted.org/packages/05/7d/42ecc29d98f52b77953a55da4836d36d534b317b4d66af971c9008804b61/rnacounter-1.2.1.tar.gz#sha256=cabc26fa3c1166cb190a94a4e0e642dce8747cc00bc07041a34fd895ef154b52 (from https://pypi.org/simple/rnacounter/), version: 1.2.1 2021-07-10T01:03:33,796 Found link https://files.pythonhosted.org/packages/dd/92/d53ee16c942fb78a312c03b22b0ddc08eb00ae4627f9125415a2c650b674/rnacounter-1.3.tar.gz#sha256=c45a5ae11e5a1a259d522054c688396df15d700b8389fca064e8d5fd4ee3e0f8 (from https://pypi.org/simple/rnacounter/), version: 1.3 2021-07-10T01:03:33,796 Found link https://files.pythonhosted.org/packages/49/18/a50e0e2b164272f6d13f458b43d6851766cf121b5672de12078df2bb953a/rnacounter-1.3.1.tar.gz#sha256=6a445bf59d0939a9ddf443a65402b2df6384acbfa9951c313b0c942d33ef23ce (from https://pypi.org/simple/rnacounter/), version: 1.3.1 2021-07-10T01:03:33,797 Found link https://files.pythonhosted.org/packages/ab/bf/54a012d6660528530b8404401bf494bda91947e38aae0d45ba4d721de6d4/rnacounter-1.4.tar.gz#sha256=48ef01f0d77a856dd9e9106a9185e996418366744b0950f8bc33bf2efaedb0b3 (from https://pypi.org/simple/rnacounter/), version: 1.4 2021-07-10T01:03:33,797 Found link https://files.pythonhosted.org/packages/84/c0/8f274da33c177f6a7c6d8632d9e99413c83e6ec688825677acace41cfdb1/rnacounter-1.4.1.tar.gz#sha256=09de574fc0432a31fa66a390e3f74cf5a1fff0b5089f60a70066b75f0da427b2 (from https://pypi.org/simple/rnacounter/), version: 1.4.1 2021-07-10T01:03:33,797 Found link https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz#sha256=b38e8e2da5d5642d19104e94763ec61bc48df4150ccd1d65250d1ac15b0fb8e0 (from https://pypi.org/simple/rnacounter/), version: 1.4.2 2021-07-10T01:03:33,797 Found link https://files.pythonhosted.org/packages/46/ee/29eed438b10276db92163dff3d25bcb91f3f9e99d9a629c35ddb97f27f4d/rnacounter-1.5.tar.gz#sha256=161cf00a14dabb7bd77ec61a2d4ba13f3e88df59b02c8e9742973df7e521fb6a (from https://pypi.org/simple/rnacounter/), version: 1.5 2021-07-10T01:03:33,798 Found link https://files.pythonhosted.org/packages/a2/ea/657e7b7aa7d777173695606509933b52d794b7dbb79501a87bfea2fb511f/rnacounter-1.5.2.tar.gz#sha256=7bcb98bbde40529d94df1fb803a014ad90deff36ed0bc52781b223c7325ec84e (from https://pypi.org/simple/rnacounter/), version: 1.5.2 2021-07-10T01:03:33,798 Skipping link: not a file: https://pypi.org/simple/rnacounter/ 2021-07-10T01:03:33,816 Given no hashes to check 1 links for project 'rnacounter': discarding no candidates 2021-07-10T01:03:33,834 Collecting rnacounter==1.1.2 2021-07-10T01:03:33,835 Created temporary directory: /tmp/pip-unpack-b4517w3c 2021-07-10T01:03:34,306 Downloading rnacounter-1.1.2.tar.gz (289 kB) 2021-07-10T01:03:34,468 Added rnacounter==1.1.2 from https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 to build tracker '/tmp/pip-req-tracker-mcoievhe' 2021-07-10T01:03:34,469 Running setup.py (path:/tmp/pip-wheel-7tn9p2x3/rnacounter_0aa1eed3ca1047479a5bd0602ad4fc61/setup.py) egg_info for package rnacounter 2021-07-10T01:03:34,470 Created temporary directory: /tmp/pip-pip-egg-info-c_jmrext 2021-07-10T01:03:34,470 Running command python setup.py egg_info 2021-07-10T01:03:35,525 running egg_info 2021-07-10T01:03:35,527 creating /tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info 2021-07-10T01:03:35,528 writing /tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info/PKG-INFO 2021-07-10T01:03:35,531 writing dependency_links to /tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info/dependency_links.txt 2021-07-10T01:03:35,533 writing requirements to /tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info/requires.txt 2021-07-10T01:03:35,533 writing top-level names to /tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info/top_level.txt 2021-07-10T01:03:35,535 writing manifest file '/tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:03:35,875 reading manifest file '/tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:03:35,877 reading manifest template 'MANIFEST.in' 2021-07-10T01:03:35,887 writing manifest file '/tmp/pip-pip-egg-info-c_jmrext/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:03:35,991 Source in /tmp/pip-wheel-7tn9p2x3/rnacounter_0aa1eed3ca1047479a5bd0602ad4fc61 has version 1.1.2, which satisfies requirement rnacounter==1.1.2 from https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 2021-07-10T01:03:35,992 Removed rnacounter==1.1.2 from https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 from build tracker '/tmp/pip-req-tracker-mcoievhe' 2021-07-10T01:03:35,998 Created temporary directory: /tmp/pip-unpack-pjiwpzqi 2021-07-10T01:03:35,998 Building wheels for collected packages: rnacounter 2021-07-10T01:03:36,002 Created temporary directory: /tmp/pip-wheel-arc0chmh 2021-07-10T01:03:36,003 Building wheel for rnacounter (setup.py): started 2021-07-10T01:03:36,003 Destination directory: /tmp/pip-wheel-arc0chmh 2021-07-10T01:03:36,003 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7tn9p2x3/rnacounter_0aa1eed3ca1047479a5bd0602ad4fc61/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7tn9p2x3/rnacounter_0aa1eed3ca1047479a5bd0602ad4fc61/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-arc0chmh 2021-07-10T01:03:37,071 running bdist_wheel 2021-07-10T01:03:37,262 running build 2021-07-10T01:03:37,262 running build_py 2021-07-10T01:03:37,400 creating build 2021-07-10T01:03:37,400 creating build/lib.linux-armv7l-3.9 2021-07-10T01:03:37,401 creating build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:03:37,402 copying rnacounter/__init__.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:03:37,404 copying rnacounter/setup.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:03:37,405 running egg_info 2021-07-10T01:03:37,417 writing rnacounter.egg-info/PKG-INFO 2021-07-10T01:03:37,419 writing dependency_links to rnacounter.egg-info/dependency_links.txt 2021-07-10T01:03:37,421 writing requirements to rnacounter.egg-info/requires.txt 2021-07-10T01:03:37,422 writing top-level names to rnacounter.egg-info/top_level.txt 2021-07-10T01:03:37,428 reading manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:03:37,430 reading manifest template 'MANIFEST.in' 2021-07-10T01:03:37,440 writing manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:03:37,442 copying rnacounter/rnacounter -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:03:37,444 copying rnacounter/rnacounter.c -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:03:37,485 copying rnacounter/rnacounter3 -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:03:37,487 creating build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:03:37,488 copying rnacounter/testfiles/gapdhKO.bam -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:03:37,492 copying rnacounter/testfiles/gapdhKO.bam.bai -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:03:37,496 copying rnacounter/testfiles/mm9_3genes_renamed.bed -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:03:37,502 copying rnacounter/testfiles/mm9_3genes_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:03:37,505 copying rnacounter/testfiles/mm9_Gapdh_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:03:37,509 running build_ext 2021-07-10T01:03:37,514 building 'rnacounter/rnacounter' extension 2021-07-10T01:03:37,515 creating build/temp.linux-armv7l-3.9 2021-07-10T01:03:37,516 creating build/temp.linux-armv7l-3.9/rnacounter 2021-07-10T01:03:37,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c rnacounter/rnacounter.c -o build/temp.linux-armv7l-3.9/rnacounter/rnacounter.o 2021-07-10T01:03:37,898 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T01:03:37,898 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T01:03:37,899 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:03:37,899 from rnacounter/rnacounter.c:239: 2021-07-10T01:03:37,899 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T01:03:37,899 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T01:03:37,899 | ^~~~~~~ 2021-07-10T01:03:39,047 rnacounter/rnacounter.c: In function ‘PyInit_rnacounter’: 2021-07-10T01:03:39,063 rnacounter/rnacounter.c:29020:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,063 29020 | __pyx_type_10rnacounter_10rnacounter_Counter.tp_print = 0; 2021-07-10T01:03:39,063 | ^ 2021-07-10T01:03:39,079 rnacounter/rnacounter.c:29024:53: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,079 29024 | __pyx_type_10rnacounter_10rnacounter_GenomicObject.tp_print = 0; 2021-07-10T01:03:39,079 | ^ 2021-07-10T01:03:39,095 rnacounter/rnacounter.c:29041:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,095 29041 | __pyx_type_10rnacounter_10rnacounter_Exon.tp_print = 0; 2021-07-10T01:03:39,095 | ^ 2021-07-10T01:03:39,111 rnacounter/rnacounter.c:29047:50: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,111 29047 | __pyx_type_10rnacounter_10rnacounter_Transcript.tp_print = 0; 2021-07-10T01:03:39,111 | ^ 2021-07-10T01:03:39,127 rnacounter/rnacounter.c:29052:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,127 29052 | __pyx_type_10rnacounter_10rnacounter_Gene.tp_print = 0; 2021-07-10T01:03:39,127 | ^ 2021-07-10T01:03:39,142 rnacounter/rnacounter.c:29056:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,143 29056 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct__parse_gtf.tp_print = 0; 2021-07-10T01:03:39,143 | ^ 2021-07-10T01:03:39,158 rnacounter/rnacounter.c:29059:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,158 29059 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_1_genexpr.tp_print = 0; 2021-07-10T01:03:39,158 | ^ 2021-07-10T01:03:39,174 rnacounter/rnacounter.c:29062:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,174 29062 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_2_genexpr.tp_print = 0; 2021-07-10T01:03:39,174 | ^ 2021-07-10T01:03:39,189 rnacounter/rnacounter.c:29065:65: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,189 29065 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_3_join.tp_print = 0; 2021-07-10T01:03:39,190 | ^ 2021-07-10T01:03:39,205 rnacounter/rnacounter.c:29068:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,205 29068 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_4_genexpr.tp_print = 0; 2021-07-10T01:03:39,205 | ^ 2021-07-10T01:03:39,220 rnacounter/rnacounter.c:29071:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,221 29071 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_5_genexpr.tp_print = 0; 2021-07-10T01:03:39,221 | ^ 2021-07-10T01:03:39,236 rnacounter/rnacounter.c:29074:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,236 29074 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_6_genexpr.tp_print = 0; 2021-07-10T01:03:39,236 | ^ 2021-07-10T01:03:39,252 rnacounter/rnacounter.c:29077:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,252 29077 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_7_process_chunk.tp_print = 0; 2021-07-10T01:03:39,252 | ^ 2021-07-10T01:03:39,267 rnacounter/rnacounter.c:29080:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,268 29080 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_8_genexpr.tp_print = 0; 2021-07-10T01:03:39,268 | ^ 2021-07-10T01:03:39,283 rnacounter/rnacounter.c:29083:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,283 29083 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_9_genexpr.tp_print = 0; 2021-07-10T01:03:39,283 | ^ 2021-07-10T01:03:39,299 rnacounter/rnacounter.c:29086:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,299 29086 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_10_genexpr.tp_print = 0; 2021-07-10T01:03:39,299 | ^ 2021-07-10T01:03:39,314 rnacounter/rnacounter.c:29089:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,315 29089 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_11_genexpr.tp_print = 0; 2021-07-10T01:03:39,315 | ^ 2021-07-10T01:03:39,330 rnacounter/rnacounter.c:29092:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,330 29092 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_12_print_output.tp_print = 0; 2021-07-10T01:03:39,330 | ^ 2021-07-10T01:03:39,346 rnacounter/rnacounter.c:29095:72: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,346 29095 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_13_parse_args.tp_print = 0; 2021-07-10T01:03:39,346 | ^ 2021-07-10T01:03:39,361 rnacounter/rnacounter.c:29098:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,362 29098 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_14_genexpr.tp_print = 0; 2021-07-10T01:03:39,362 | ^ 2021-07-10T01:03:39,377 rnacounter/rnacounter.c:29101:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,377 29101 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_15_genexpr.tp_print = 0; 2021-07-10T01:03:39,377 | ^ 2021-07-10T01:03:39,393 rnacounter/rnacounter.c:29104:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:03:39,393 29104 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_16_genexpr.tp_print = 0; 2021-07-10T01:03:39,393 | ^ 2021-07-10T01:03:39,507 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSave’: 2021-07-10T01:03:39,535 rnacounter/rnacounter.c:29926:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:03:39,536 29926 | *type = tstate->exc_type; 2021-07-10T01:03:39,536 | ^~~~~~~~ 2021-07-10T01:03:39,536 | curexc_type 2021-07-10T01:03:39,564 rnacounter/rnacounter.c:29927:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:03:39,564 29927 | *value = tstate->exc_value; 2021-07-10T01:03:39,564 | ^~~~~~~~~ 2021-07-10T01:03:39,565 | curexc_value 2021-07-10T01:03:39,593 rnacounter/rnacounter.c:29928:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:03:39,593 29928 | *tb = tstate->exc_traceback; 2021-07-10T01:03:39,593 | ^~~~~~~~~~~~~ 2021-07-10T01:03:39,593 | curexc_traceback 2021-07-10T01:03:39,593 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionReset’: 2021-07-10T01:03:39,622 rnacounter/rnacounter.c:29940:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:03:39,622 29940 | tmp_type = tstate->exc_type; 2021-07-10T01:03:39,622 | ^~~~~~~~ 2021-07-10T01:03:39,622 | curexc_type 2021-07-10T01:03:39,650 rnacounter/rnacounter.c:29941:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:03:39,650 29941 | tmp_value = tstate->exc_value; 2021-07-10T01:03:39,651 | ^~~~~~~~~ 2021-07-10T01:03:39,651 | curexc_value 2021-07-10T01:03:39,679 rnacounter/rnacounter.c:29942:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:03:39,679 29942 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:03:39,679 | ^~~~~~~~~~~~~ 2021-07-10T01:03:39,679 | curexc_traceback 2021-07-10T01:03:39,707 rnacounter/rnacounter.c:29943:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:03:39,708 29943 | tstate->exc_type = type; 2021-07-10T01:03:39,708 | ^~~~~~~~ 2021-07-10T01:03:39,708 | curexc_type 2021-07-10T01:03:39,736 rnacounter/rnacounter.c:29944:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:03:39,736 29944 | tstate->exc_value = value; 2021-07-10T01:03:39,737 | ^~~~~~~~~ 2021-07-10T01:03:39,737 | curexc_value 2021-07-10T01:03:39,765 rnacounter/rnacounter.c:29945:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:03:39,765 29945 | tstate->exc_traceback = tb; 2021-07-10T01:03:39,765 | ^~~~~~~~~~~~~ 2021-07-10T01:03:39,765 | curexc_traceback 2021-07-10T01:03:39,772 rnacounter/rnacounter.c: In function ‘__Pyx_GetException’: 2021-07-10T01:03:39,801 rnacounter/rnacounter.c:29988:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:03:39,801 29988 | tmp_type = tstate->exc_type; 2021-07-10T01:03:39,801 | ^~~~~~~~ 2021-07-10T01:03:39,801 | curexc_type 2021-07-10T01:03:39,829 rnacounter/rnacounter.c:29989:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:03:39,830 29989 | tmp_value = tstate->exc_value; 2021-07-10T01:03:39,830 | ^~~~~~~~~ 2021-07-10T01:03:39,830 | curexc_value 2021-07-10T01:03:39,858 rnacounter/rnacounter.c:29990:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:03:39,858 29990 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:03:39,858 | ^~~~~~~~~~~~~ 2021-07-10T01:03:39,858 | curexc_traceback 2021-07-10T01:03:39,887 rnacounter/rnacounter.c:29991:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:03:39,887 29991 | tstate->exc_type = local_type; 2021-07-10T01:03:39,887 | ^~~~~~~~ 2021-07-10T01:03:39,887 | curexc_type 2021-07-10T01:03:39,915 rnacounter/rnacounter.c:29992:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:03:39,916 29992 | tstate->exc_value = local_value; 2021-07-10T01:03:39,916 | ^~~~~~~~~ 2021-07-10T01:03:39,916 | curexc_value 2021-07-10T01:03:39,944 rnacounter/rnacounter.c:29993:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:03:39,944 29993 | tstate->exc_traceback = local_tb; 2021-07-10T01:03:39,945 | ^~~~~~~~~~~~~ 2021-07-10T01:03:39,945 | curexc_traceback 2021-07-10T01:03:39,952 rnacounter/rnacounter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T01:03:39,968 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:39,968 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:39,968 | ^ 2021-07-10T01:03:39,969 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:39,969 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:39,969 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:39,969 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:39,969 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:39,969 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:39,988 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:39,988 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:39,988 | ^ 2021-07-10T01:03:39,988 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:39,988 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:39,988 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:39,989 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:03:39,989 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:03:39,989 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,007 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,007 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,007 | ^ 2021-07-10T01:03:40,007 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,008 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,008 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,008 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:40,008 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:40,008 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,026 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,027 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,027 | ^ 2021-07-10T01:03:40,027 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,027 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,027 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,027 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:40,027 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:40,027 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,046 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,046 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,046 | ^ 2021-07-10T01:03:40,046 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,046 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,046 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,046 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:03:40,047 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:03:40,047 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,065 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,066 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,066 | ^ 2021-07-10T01:03:40,066 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,066 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,066 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,066 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:40,066 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:40,066 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,088 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,089 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,089 | ^ 2021-07-10T01:03:40,089 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,089 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,089 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,089 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:40,089 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:40,090 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,108 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,108 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,108 | ^ 2021-07-10T01:03:40,108 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,108 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,108 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,109 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:03:40,109 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:03:40,109 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,127 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,127 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,127 | ^ 2021-07-10T01:03:40,128 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,128 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,128 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,128 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:40,128 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:40,128 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,146 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,147 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,147 | ^ 2021-07-10T01:03:40,147 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,147 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,147 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,147 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:40,147 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:40,147 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,166 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,166 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,166 | ^ 2021-07-10T01:03:40,166 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,166 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,166 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,166 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:03:40,167 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:03:40,167 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,185 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,185 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:03:40,185 | ^ 2021-07-10T01:03:40,185 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:03:40,186 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:03:40,186 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,186 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:03:40,186 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:03:40,186 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,624 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_Call’: 2021-07-10T01:03:40,640 rnacounter/rnacounter.c:31926:2: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,641 31926 | return PyCFunction_Call(func, arg, kw); 2021-07-10T01:03:40,641 | ^~~~~~ 2021-07-10T01:03:40,641 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:03:40,641 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,641 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:03:40,641 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:03:40,642 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,642 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_init’: 2021-07-10T01:03:40,658 rnacounter/rnacounter.c:31991:5: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:03:40,659 31991 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2021-07-10T01:03:40,659 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,659 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:03:40,659 from rnacounter/rnacounter.c:16: 2021-07-10T01:03:40,659 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:03:40,659 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:03:40,659 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:03:40,754 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-10T01:03:40,785 rnacounter/rnacounter.c:32818:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:03:40,785 32818 | tmp_type = tstate->exc_type; 2021-07-10T01:03:40,786 | ^~~~~~~~ 2021-07-10T01:03:40,786 | curexc_type 2021-07-10T01:03:40,816 rnacounter/rnacounter.c:32819:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:03:40,817 32819 | tmp_value = tstate->exc_value; 2021-07-10T01:03:40,817 | ^~~~~~~~~ 2021-07-10T01:03:40,817 | curexc_value 2021-07-10T01:03:40,848 rnacounter/rnacounter.c:32820:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:03:40,848 32820 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:03:40,848 | ^~~~~~~~~~~~~ 2021-07-10T01:03:40,848 | curexc_traceback 2021-07-10T01:03:40,879 rnacounter/rnacounter.c:32821:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:03:40,879 32821 | tstate->exc_type = *type; 2021-07-10T01:03:40,879 | ^~~~~~~~ 2021-07-10T01:03:40,879 | curexc_type 2021-07-10T01:03:40,910 rnacounter/rnacounter.c:32822:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:03:40,910 32822 | tstate->exc_value = *value; 2021-07-10T01:03:40,910 | ^~~~~~~~~ 2021-07-10T01:03:40,911 | curexc_value 2021-07-10T01:03:40,941 rnacounter/rnacounter.c:32823:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:03:40,942 32823 | tstate->exc_traceback = *tb; 2021-07-10T01:03:40,942 | ^~~~~~~~~~~~~ 2021-07-10T01:03:40,942 | curexc_traceback 2021-07-10T01:03:41,397 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T01:03:41,397 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:03:41,397 from rnacounter/rnacounter.c:239: 2021-07-10T01:03:41,397 At top level: 2021-07-10T01:03:41,398 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T01:03:41,398 1464 | _import_array(void) 2021-07-10T01:03:41,398 | ^~~~~~~~~~~~~ 2021-07-10T01:03:41,407 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T01:03:41,525 Building wheel for rnacounter (setup.py): finished with status 'error' 2021-07-10T01:03:41,526 ERROR: Failed building wheel for rnacounter 2021-07-10T01:03:41,526 Running setup.py clean for rnacounter 2021-07-10T01:03:41,527 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7tn9p2x3/rnacounter_0aa1eed3ca1047479a5bd0602ad4fc61/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7tn9p2x3/rnacounter_0aa1eed3ca1047479a5bd0602ad4fc61/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T01:03:42,567 running clean 2021-07-10T01:03:42,568 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:03:42,570 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:03:42,576 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T01:03:42,577 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T01:03:42,577 removing 'build' 2021-07-10T01:03:42,661 Failed to build rnacounter 2021-07-10T01:03:42,662 ERROR: Failed to build one or more wheels 2021-07-10T01:03:42,663 Exception information: 2021-07-10T01:03:42,663 Traceback (most recent call last): 2021-07-10T01:03:42,663 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T01:03:42,663 status = self.run(options, args) 2021-07-10T01:03:42,663 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T01:03:42,663 return func(self, options, args) 2021-07-10T01:03:42,663 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T01:03:42,663 raise CommandError( 2021-07-10T01:03:42,663 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T01:03:42,665 Removed build tracker: '/tmp/pip-req-tracker-mcoievhe'