2021-07-10T01:05:20,231 Created temporary directory: /tmp/pip-ephem-wheel-cache-f8pg8fsb 2021-07-10T01:05:20,234 Created temporary directory: /tmp/pip-req-tracker-kaeuku44 2021-07-10T01:05:20,235 Initialized build tracking at /tmp/pip-req-tracker-kaeuku44 2021-07-10T01:05:20,235 Created build tracker: /tmp/pip-req-tracker-kaeuku44 2021-07-10T01:05:20,235 Entered build tracker: /tmp/pip-req-tracker-kaeuku44 2021-07-10T01:05:20,236 Created temporary directory: /tmp/pip-wheel-36dvhkoe 2021-07-10T01:05:20,269 1 location(s) to search for versions of rnacounter: 2021-07-10T01:05:20,269 * https://pypi.org/simple/rnacounter/ 2021-07-10T01:05:20,270 Fetching project page and analyzing links: https://pypi.org/simple/rnacounter/ 2021-07-10T01:05:20,270 Getting page https://pypi.org/simple/rnacounter/ 2021-07-10T01:05:20,272 Found index url https://pypi.org/simple 2021-07-10T01:05:20,365 Found link https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 (from https://pypi.org/simple/rnacounter/), version: 1.1.2 2021-07-10T01:05:20,365 Found link https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a (from https://pypi.org/simple/rnacounter/), version: 1.1.3.1 2021-07-10T01:05:20,365 Found link https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.2 2021-07-10T01:05:20,366 Found link https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.7 2021-07-10T01:05:20,366 Found link https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.10 2021-07-10T01:05:20,366 Found link https://files.pythonhosted.org/packages/8a/5e/1b112fc6343bf52ace3a9afaa30eabaf4338afadabf1fb97454a7556b835/rnacounter-1.2.tar.gz#sha256=d63cb98d0aa90339c2dbe27741a361f9778e9617585e04a35d078421e364ba0d (from https://pypi.org/simple/rnacounter/), version: 1.2 2021-07-10T01:05:20,367 Found link https://files.pythonhosted.org/packages/05/7d/42ecc29d98f52b77953a55da4836d36d534b317b4d66af971c9008804b61/rnacounter-1.2.1.tar.gz#sha256=cabc26fa3c1166cb190a94a4e0e642dce8747cc00bc07041a34fd895ef154b52 (from https://pypi.org/simple/rnacounter/), version: 1.2.1 2021-07-10T01:05:20,367 Found link https://files.pythonhosted.org/packages/dd/92/d53ee16c942fb78a312c03b22b0ddc08eb00ae4627f9125415a2c650b674/rnacounter-1.3.tar.gz#sha256=c45a5ae11e5a1a259d522054c688396df15d700b8389fca064e8d5fd4ee3e0f8 (from https://pypi.org/simple/rnacounter/), version: 1.3 2021-07-10T01:05:20,367 Found link https://files.pythonhosted.org/packages/49/18/a50e0e2b164272f6d13f458b43d6851766cf121b5672de12078df2bb953a/rnacounter-1.3.1.tar.gz#sha256=6a445bf59d0939a9ddf443a65402b2df6384acbfa9951c313b0c942d33ef23ce (from https://pypi.org/simple/rnacounter/), version: 1.3.1 2021-07-10T01:05:20,367 Found link https://files.pythonhosted.org/packages/ab/bf/54a012d6660528530b8404401bf494bda91947e38aae0d45ba4d721de6d4/rnacounter-1.4.tar.gz#sha256=48ef01f0d77a856dd9e9106a9185e996418366744b0950f8bc33bf2efaedb0b3 (from https://pypi.org/simple/rnacounter/), version: 1.4 2021-07-10T01:05:20,368 Found link https://files.pythonhosted.org/packages/84/c0/8f274da33c177f6a7c6d8632d9e99413c83e6ec688825677acace41cfdb1/rnacounter-1.4.1.tar.gz#sha256=09de574fc0432a31fa66a390e3f74cf5a1fff0b5089f60a70066b75f0da427b2 (from https://pypi.org/simple/rnacounter/), version: 1.4.1 2021-07-10T01:05:20,368 Found link https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz#sha256=b38e8e2da5d5642d19104e94763ec61bc48df4150ccd1d65250d1ac15b0fb8e0 (from https://pypi.org/simple/rnacounter/), version: 1.4.2 2021-07-10T01:05:20,368 Found link https://files.pythonhosted.org/packages/46/ee/29eed438b10276db92163dff3d25bcb91f3f9e99d9a629c35ddb97f27f4d/rnacounter-1.5.tar.gz#sha256=161cf00a14dabb7bd77ec61a2d4ba13f3e88df59b02c8e9742973df7e521fb6a (from https://pypi.org/simple/rnacounter/), version: 1.5 2021-07-10T01:05:20,369 Found link https://files.pythonhosted.org/packages/a2/ea/657e7b7aa7d777173695606509933b52d794b7dbb79501a87bfea2fb511f/rnacounter-1.5.2.tar.gz#sha256=7bcb98bbde40529d94df1fb803a014ad90deff36ed0bc52781b223c7325ec84e (from https://pypi.org/simple/rnacounter/), version: 1.5.2 2021-07-10T01:05:20,369 Skipping link: not a file: https://pypi.org/simple/rnacounter/ 2021-07-10T01:05:20,387 Given no hashes to check 1 links for project 'rnacounter': discarding no candidates 2021-07-10T01:05:20,404 Collecting rnacounter==1.1.3.1 2021-07-10T01:05:20,405 Created temporary directory: /tmp/pip-unpack-hhamk0q7 2021-07-10T01:05:20,610 Downloading rnacounter-1.1.3.1.tar.gz (289 kB) 2021-07-10T01:05:20,781 Added rnacounter==1.1.3.1 from https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a to build tracker '/tmp/pip-req-tracker-kaeuku44' 2021-07-10T01:05:20,782 Running setup.py (path:/tmp/pip-wheel-36dvhkoe/rnacounter_1fcc5a25d2094b3c8b105c8b1ae6ce1e/setup.py) egg_info for package rnacounter 2021-07-10T01:05:20,783 Created temporary directory: /tmp/pip-pip-egg-info-tqlsmzch 2021-07-10T01:05:20,783 Running command python setup.py egg_info 2021-07-10T01:05:21,861 running egg_info 2021-07-10T01:05:21,863 creating /tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info 2021-07-10T01:05:21,864 writing /tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info/PKG-INFO 2021-07-10T01:05:21,867 writing dependency_links to /tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info/dependency_links.txt 2021-07-10T01:05:21,869 writing requirements to /tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info/requires.txt 2021-07-10T01:05:21,870 writing top-level names to /tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info/top_level.txt 2021-07-10T01:05:21,872 writing manifest file '/tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:05:22,219 reading manifest file '/tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:05:22,221 reading manifest template 'MANIFEST.in' 2021-07-10T01:05:22,230 writing manifest file '/tmp/pip-pip-egg-info-tqlsmzch/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:05:22,336 Source in /tmp/pip-wheel-36dvhkoe/rnacounter_1fcc5a25d2094b3c8b105c8b1ae6ce1e has version 1.1.3.1, which satisfies requirement rnacounter==1.1.3.1 from https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a 2021-07-10T01:05:22,337 Removed rnacounter==1.1.3.1 from https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a from build tracker '/tmp/pip-req-tracker-kaeuku44' 2021-07-10T01:05:22,342 Created temporary directory: /tmp/pip-unpack-nx7zt3hp 2021-07-10T01:05:22,342 Building wheels for collected packages: rnacounter 2021-07-10T01:05:22,346 Created temporary directory: /tmp/pip-wheel-yr0fanwq 2021-07-10T01:05:22,347 Building wheel for rnacounter (setup.py): started 2021-07-10T01:05:22,347 Destination directory: /tmp/pip-wheel-yr0fanwq 2021-07-10T01:05:22,348 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-36dvhkoe/rnacounter_1fcc5a25d2094b3c8b105c8b1ae6ce1e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-36dvhkoe/rnacounter_1fcc5a25d2094b3c8b105c8b1ae6ce1e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-yr0fanwq 2021-07-10T01:05:23,429 running bdist_wheel 2021-07-10T01:05:23,624 running build 2021-07-10T01:05:23,624 running build_py 2021-07-10T01:05:23,759 creating build 2021-07-10T01:05:23,760 creating build/lib.linux-armv7l-3.9 2021-07-10T01:05:23,760 creating build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:05:23,761 copying rnacounter/main.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:05:23,763 copying rnacounter/__init__.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:05:23,765 copying rnacounter/setup.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:05:23,767 running egg_info 2021-07-10T01:05:23,779 writing rnacounter.egg-info/PKG-INFO 2021-07-10T01:05:23,781 writing dependency_links to rnacounter.egg-info/dependency_links.txt 2021-07-10T01:05:23,782 writing requirements to rnacounter.egg-info/requires.txt 2021-07-10T01:05:23,783 writing top-level names to rnacounter.egg-info/top_level.txt 2021-07-10T01:05:23,790 reading manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:05:23,792 reading manifest template 'MANIFEST.in' 2021-07-10T01:05:23,801 writing manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:05:23,804 copying rnacounter/rnacounter.c -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:05:23,843 creating build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:05:23,844 copying rnacounter/testfiles/gapdhKO.bam -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:05:23,849 copying rnacounter/testfiles/gapdhKO.bam.bai -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:05:23,854 copying rnacounter/testfiles/mm9_3genes_renamed.bed -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:05:23,857 copying rnacounter/testfiles/mm9_3genes_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:05:23,861 copying rnacounter/testfiles/mm9_Gapdh_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:05:23,865 running build_ext 2021-07-10T01:05:23,870 building 'rnacounter/rnacounter' extension 2021-07-10T01:05:23,872 creating build/temp.linux-armv7l-3.9 2021-07-10T01:05:23,872 creating build/temp.linux-armv7l-3.9/rnacounter 2021-07-10T01:05:23,874 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c rnacounter/rnacounter.c -o build/temp.linux-armv7l-3.9/rnacounter/rnacounter.o 2021-07-10T01:05:24,298 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T01:05:24,298 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T01:05:24,298 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:05:24,298 from rnacounter/rnacounter.c:239: 2021-07-10T01:05:24,298 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T01:05:24,299 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T01:05:24,299 | ^~~~~~~ 2021-07-10T01:05:25,440 rnacounter/rnacounter.c: In function ‘PyInit_rnacounter’: 2021-07-10T01:05:25,456 rnacounter/rnacounter.c:29020:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,456 29020 | __pyx_type_10rnacounter_10rnacounter_Counter.tp_print = 0; 2021-07-10T01:05:25,456 | ^ 2021-07-10T01:05:25,471 rnacounter/rnacounter.c:29024:53: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,472 29024 | __pyx_type_10rnacounter_10rnacounter_GenomicObject.tp_print = 0; 2021-07-10T01:05:25,472 | ^ 2021-07-10T01:05:25,487 rnacounter/rnacounter.c:29041:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,488 29041 | __pyx_type_10rnacounter_10rnacounter_Exon.tp_print = 0; 2021-07-10T01:05:25,488 | ^ 2021-07-10T01:05:25,503 rnacounter/rnacounter.c:29047:50: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,504 29047 | __pyx_type_10rnacounter_10rnacounter_Transcript.tp_print = 0; 2021-07-10T01:05:25,504 | ^ 2021-07-10T01:05:25,519 rnacounter/rnacounter.c:29052:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,519 29052 | __pyx_type_10rnacounter_10rnacounter_Gene.tp_print = 0; 2021-07-10T01:05:25,519 | ^ 2021-07-10T01:05:25,535 rnacounter/rnacounter.c:29056:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,535 29056 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct__parse_gtf.tp_print = 0; 2021-07-10T01:05:25,535 | ^ 2021-07-10T01:05:25,551 rnacounter/rnacounter.c:29059:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,551 29059 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_1_genexpr.tp_print = 0; 2021-07-10T01:05:25,551 | ^ 2021-07-10T01:05:25,567 rnacounter/rnacounter.c:29062:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,567 29062 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_2_genexpr.tp_print = 0; 2021-07-10T01:05:25,567 | ^ 2021-07-10T01:05:25,583 rnacounter/rnacounter.c:29065:65: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,583 29065 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_3_join.tp_print = 0; 2021-07-10T01:05:25,583 | ^ 2021-07-10T01:05:25,598 rnacounter/rnacounter.c:29068:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,599 29068 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_4_genexpr.tp_print = 0; 2021-07-10T01:05:25,599 | ^ 2021-07-10T01:05:25,614 rnacounter/rnacounter.c:29071:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,614 29071 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_5_genexpr.tp_print = 0; 2021-07-10T01:05:25,615 | ^ 2021-07-10T01:05:25,630 rnacounter/rnacounter.c:29074:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,630 29074 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_6_genexpr.tp_print = 0; 2021-07-10T01:05:25,630 | ^ 2021-07-10T01:05:25,646 rnacounter/rnacounter.c:29077:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,646 29077 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_7_process_chunk.tp_print = 0; 2021-07-10T01:05:25,646 | ^ 2021-07-10T01:05:25,662 rnacounter/rnacounter.c:29080:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,662 29080 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_8_genexpr.tp_print = 0; 2021-07-10T01:05:25,662 | ^ 2021-07-10T01:05:25,678 rnacounter/rnacounter.c:29083:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,678 29083 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_9_genexpr.tp_print = 0; 2021-07-10T01:05:25,678 | ^ 2021-07-10T01:05:25,694 rnacounter/rnacounter.c:29086:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,694 29086 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_10_genexpr.tp_print = 0; 2021-07-10T01:05:25,694 | ^ 2021-07-10T01:05:25,710 rnacounter/rnacounter.c:29089:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,710 29089 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_11_genexpr.tp_print = 0; 2021-07-10T01:05:25,710 | ^ 2021-07-10T01:05:25,725 rnacounter/rnacounter.c:29092:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,725 29092 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_12_print_output.tp_print = 0; 2021-07-10T01:05:25,726 | ^ 2021-07-10T01:05:25,741 rnacounter/rnacounter.c:29095:72: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,741 29095 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_13_parse_args.tp_print = 0; 2021-07-10T01:05:25,741 | ^ 2021-07-10T01:05:25,756 rnacounter/rnacounter.c:29098:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,757 29098 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_14_genexpr.tp_print = 0; 2021-07-10T01:05:25,757 | ^ 2021-07-10T01:05:25,772 rnacounter/rnacounter.c:29101:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,773 29101 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_15_genexpr.tp_print = 0; 2021-07-10T01:05:25,773 | ^ 2021-07-10T01:05:25,788 rnacounter/rnacounter.c:29104:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:05:25,788 29104 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_16_genexpr.tp_print = 0; 2021-07-10T01:05:25,789 | ^ 2021-07-10T01:05:25,902 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSave’: 2021-07-10T01:05:25,931 rnacounter/rnacounter.c:29926:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:05:25,931 29926 | *type = tstate->exc_type; 2021-07-10T01:05:25,931 | ^~~~~~~~ 2021-07-10T01:05:25,931 | curexc_type 2021-07-10T01:05:25,959 rnacounter/rnacounter.c:29927:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:05:25,960 29927 | *value = tstate->exc_value; 2021-07-10T01:05:25,960 | ^~~~~~~~~ 2021-07-10T01:05:25,960 | curexc_value 2021-07-10T01:05:25,988 rnacounter/rnacounter.c:29928:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:05:25,988 29928 | *tb = tstate->exc_traceback; 2021-07-10T01:05:25,988 | ^~~~~~~~~~~~~ 2021-07-10T01:05:25,989 | curexc_traceback 2021-07-10T01:05:25,989 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionReset’: 2021-07-10T01:05:26,017 rnacounter/rnacounter.c:29940:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:05:26,017 29940 | tmp_type = tstate->exc_type; 2021-07-10T01:05:26,018 | ^~~~~~~~ 2021-07-10T01:05:26,018 | curexc_type 2021-07-10T01:05:26,046 rnacounter/rnacounter.c:29941:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:05:26,046 29941 | tmp_value = tstate->exc_value; 2021-07-10T01:05:26,047 | ^~~~~~~~~ 2021-07-10T01:05:26,047 | curexc_value 2021-07-10T01:05:26,075 rnacounter/rnacounter.c:29942:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:05:26,076 29942 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:05:26,076 | ^~~~~~~~~~~~~ 2021-07-10T01:05:26,076 | curexc_traceback 2021-07-10T01:05:26,104 rnacounter/rnacounter.c:29943:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:05:26,105 29943 | tstate->exc_type = type; 2021-07-10T01:05:26,105 | ^~~~~~~~ 2021-07-10T01:05:26,105 | curexc_type 2021-07-10T01:05:26,133 rnacounter/rnacounter.c:29944:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:05:26,134 29944 | tstate->exc_value = value; 2021-07-10T01:05:26,134 | ^~~~~~~~~ 2021-07-10T01:05:26,134 | curexc_value 2021-07-10T01:05:26,163 rnacounter/rnacounter.c:29945:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:05:26,163 29945 | tstate->exc_traceback = tb; 2021-07-10T01:05:26,163 | ^~~~~~~~~~~~~ 2021-07-10T01:05:26,163 | curexc_traceback 2021-07-10T01:05:26,170 rnacounter/rnacounter.c: In function ‘__Pyx_GetException’: 2021-07-10T01:05:26,198 rnacounter/rnacounter.c:29988:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:05:26,198 29988 | tmp_type = tstate->exc_type; 2021-07-10T01:05:26,199 | ^~~~~~~~ 2021-07-10T01:05:26,199 | curexc_type 2021-07-10T01:05:26,227 rnacounter/rnacounter.c:29989:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:05:26,227 29989 | tmp_value = tstate->exc_value; 2021-07-10T01:05:26,227 | ^~~~~~~~~ 2021-07-10T01:05:26,227 | curexc_value 2021-07-10T01:05:26,256 rnacounter/rnacounter.c:29990:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:05:26,256 29990 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:05:26,256 | ^~~~~~~~~~~~~ 2021-07-10T01:05:26,256 | curexc_traceback 2021-07-10T01:05:26,284 rnacounter/rnacounter.c:29991:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:05:26,284 29991 | tstate->exc_type = local_type; 2021-07-10T01:05:26,285 | ^~~~~~~~ 2021-07-10T01:05:26,285 | curexc_type 2021-07-10T01:05:26,313 rnacounter/rnacounter.c:29992:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:05:26,313 29992 | tstate->exc_value = local_value; 2021-07-10T01:05:26,313 | ^~~~~~~~~ 2021-07-10T01:05:26,313 | curexc_value 2021-07-10T01:05:26,341 rnacounter/rnacounter.c:29993:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:05:26,342 29993 | tstate->exc_traceback = local_tb; 2021-07-10T01:05:26,342 | ^~~~~~~~~~~~~ 2021-07-10T01:05:26,342 | curexc_traceback 2021-07-10T01:05:26,349 rnacounter/rnacounter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T01:05:26,365 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,366 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,366 | ^ 2021-07-10T01:05:26,366 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,366 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,367 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,367 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,367 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,367 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,386 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,386 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,386 | ^ 2021-07-10T01:05:26,386 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,386 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,386 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,387 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:05:26,387 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:05:26,387 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,405 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,405 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,405 | ^ 2021-07-10T01:05:26,406 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,406 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,406 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,406 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,406 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,406 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,424 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,425 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,425 | ^ 2021-07-10T01:05:26,425 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,425 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,425 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,425 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,425 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,425 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,444 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,444 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,444 | ^ 2021-07-10T01:05:26,444 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,444 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,444 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,444 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:05:26,444 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:05:26,445 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,463 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,463 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,463 | ^ 2021-07-10T01:05:26,463 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,464 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,464 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,464 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,464 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,464 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,486 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,486 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,486 | ^ 2021-07-10T01:05:26,486 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,487 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,487 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,487 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,487 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,487 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,505 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,506 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,506 | ^ 2021-07-10T01:05:26,506 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,506 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,506 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,506 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:05:26,506 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:05:26,507 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,525 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,525 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,526 | ^ 2021-07-10T01:05:26,526 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,526 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,526 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,526 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,526 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,526 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,545 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,545 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,545 | ^ 2021-07-10T01:05:26,545 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,545 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,545 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,546 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,546 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,546 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,564 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,565 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,565 | ^ 2021-07-10T01:05:26,565 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,565 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,565 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,565 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:05:26,565 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:05:26,565 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:26,584 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:26,584 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:05:26,584 | ^ 2021-07-10T01:05:26,585 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:05:26,585 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:05:26,585 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:26,585 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:05:26,585 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:05:26,585 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:27,023 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_Call’: 2021-07-10T01:05:27,040 rnacounter/rnacounter.c:31926:2: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:27,040 31926 | return PyCFunction_Call(func, arg, kw); 2021-07-10T01:05:27,040 | ^~~~~~ 2021-07-10T01:05:27,041 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:05:27,041 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:27,041 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:05:27,041 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:05:27,041 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:05:27,041 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_init’: 2021-07-10T01:05:27,058 rnacounter/rnacounter.c:31991:5: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:05:27,058 31991 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2021-07-10T01:05:27,059 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:05:27,059 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:05:27,059 from rnacounter/rnacounter.c:16: 2021-07-10T01:05:27,059 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:05:27,059 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:05:27,059 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:05:27,154 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-10T01:05:27,185 rnacounter/rnacounter.c:32818:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:05:27,185 32818 | tmp_type = tstate->exc_type; 2021-07-10T01:05:27,185 | ^~~~~~~~ 2021-07-10T01:05:27,186 | curexc_type 2021-07-10T01:05:27,217 rnacounter/rnacounter.c:32819:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:05:27,217 32819 | tmp_value = tstate->exc_value; 2021-07-10T01:05:27,217 | ^~~~~~~~~ 2021-07-10T01:05:27,217 | curexc_value 2021-07-10T01:05:27,248 rnacounter/rnacounter.c:32820:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:05:27,249 32820 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:05:27,249 | ^~~~~~~~~~~~~ 2021-07-10T01:05:27,249 | curexc_traceback 2021-07-10T01:05:27,280 rnacounter/rnacounter.c:32821:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:05:27,280 32821 | tstate->exc_type = *type; 2021-07-10T01:05:27,280 | ^~~~~~~~ 2021-07-10T01:05:27,280 | curexc_type 2021-07-10T01:05:27,311 rnacounter/rnacounter.c:32822:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:05:27,311 32822 | tstate->exc_value = *value; 2021-07-10T01:05:27,311 | ^~~~~~~~~ 2021-07-10T01:05:27,311 | curexc_value 2021-07-10T01:05:27,343 rnacounter/rnacounter.c:32823:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:05:27,343 32823 | tstate->exc_traceback = *tb; 2021-07-10T01:05:27,343 | ^~~~~~~~~~~~~ 2021-07-10T01:05:27,343 | curexc_traceback 2021-07-10T01:05:27,796 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T01:05:27,797 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:05:27,797 from rnacounter/rnacounter.c:239: 2021-07-10T01:05:27,797 At top level: 2021-07-10T01:05:27,797 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T01:05:27,798 1464 | _import_array(void) 2021-07-10T01:05:27,798 | ^~~~~~~~~~~~~ 2021-07-10T01:05:27,812 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T01:05:27,926 Building wheel for rnacounter (setup.py): finished with status 'error' 2021-07-10T01:05:27,927 ERROR: Failed building wheel for rnacounter 2021-07-10T01:05:27,927 Running setup.py clean for rnacounter 2021-07-10T01:05:27,928 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-36dvhkoe/rnacounter_1fcc5a25d2094b3c8b105c8b1ae6ce1e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-36dvhkoe/rnacounter_1fcc5a25d2094b3c8b105c8b1ae6ce1e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T01:05:28,992 running clean 2021-07-10T01:05:28,994 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:05:28,996 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:05:29,002 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T01:05:29,002 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T01:05:29,002 removing 'build' 2021-07-10T01:05:29,088 Failed to build rnacounter 2021-07-10T01:05:29,089 ERROR: Failed to build one or more wheels 2021-07-10T01:05:29,089 Exception information: 2021-07-10T01:05:29,089 Traceback (most recent call last): 2021-07-10T01:05:29,089 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T01:05:29,089 status = self.run(options, args) 2021-07-10T01:05:29,089 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T01:05:29,089 return func(self, options, args) 2021-07-10T01:05:29,089 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T01:05:29,089 raise CommandError( 2021-07-10T01:05:29,089 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T01:05:29,092 Removed build tracker: '/tmp/pip-req-tracker-kaeuku44'