2021-07-10T01:22:06,988 Created temporary directory: /tmp/pip-ephem-wheel-cache-uol73mjd
2021-07-10T01:22:06,992 Created temporary directory: /tmp/pip-req-tracker-_p11sb45
2021-07-10T01:22:06,992 Initialized build tracking at /tmp/pip-req-tracker-_p11sb45
2021-07-10T01:22:06,993 Created build tracker: /tmp/pip-req-tracker-_p11sb45
2021-07-10T01:22:06,993 Entered build tracker: /tmp/pip-req-tracker-_p11sb45
2021-07-10T01:22:06,994 Created temporary directory: /tmp/pip-wheel-2e3st0hc
2021-07-10T01:22:07,029 1 location(s) to search for versions of rnacounter:
2021-07-10T01:22:07,029 * https://pypi.org/simple/rnacounter/
2021-07-10T01:22:07,029 Fetching project page and analyzing links: https://pypi.org/simple/rnacounter/
2021-07-10T01:22:07,030 Getting page https://pypi.org/simple/rnacounter/
2021-07-10T01:22:07,031 Found index url https://pypi.org/simple
2021-07-10T01:22:07,126   Found link https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 (from https://pypi.org/simple/rnacounter/), version: 1.1.2
2021-07-10T01:22:07,126   Found link https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a (from https://pypi.org/simple/rnacounter/), version: 1.1.3.1
2021-07-10T01:22:07,127   Found link https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.2
2021-07-10T01:22:07,127   Found link https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.7
2021-07-10T01:22:07,127   Found link https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.10
2021-07-10T01:22:07,128   Found link https://files.pythonhosted.org/packages/8a/5e/1b112fc6343bf52ace3a9afaa30eabaf4338afadabf1fb97454a7556b835/rnacounter-1.2.tar.gz#sha256=d63cb98d0aa90339c2dbe27741a361f9778e9617585e04a35d078421e364ba0d (from https://pypi.org/simple/rnacounter/), version: 1.2
2021-07-10T01:22:07,128   Found link https://files.pythonhosted.org/packages/05/7d/42ecc29d98f52b77953a55da4836d36d534b317b4d66af971c9008804b61/rnacounter-1.2.1.tar.gz#sha256=cabc26fa3c1166cb190a94a4e0e642dce8747cc00bc07041a34fd895ef154b52 (from https://pypi.org/simple/rnacounter/), version: 1.2.1
2021-07-10T01:22:07,128   Found link https://files.pythonhosted.org/packages/dd/92/d53ee16c942fb78a312c03b22b0ddc08eb00ae4627f9125415a2c650b674/rnacounter-1.3.tar.gz#sha256=c45a5ae11e5a1a259d522054c688396df15d700b8389fca064e8d5fd4ee3e0f8 (from https://pypi.org/simple/rnacounter/), version: 1.3
2021-07-10T01:22:07,128   Found link https://files.pythonhosted.org/packages/49/18/a50e0e2b164272f6d13f458b43d6851766cf121b5672de12078df2bb953a/rnacounter-1.3.1.tar.gz#sha256=6a445bf59d0939a9ddf443a65402b2df6384acbfa9951c313b0c942d33ef23ce (from https://pypi.org/simple/rnacounter/), version: 1.3.1
2021-07-10T01:22:07,129   Found link https://files.pythonhosted.org/packages/ab/bf/54a012d6660528530b8404401bf494bda91947e38aae0d45ba4d721de6d4/rnacounter-1.4.tar.gz#sha256=48ef01f0d77a856dd9e9106a9185e996418366744b0950f8bc33bf2efaedb0b3 (from https://pypi.org/simple/rnacounter/), version: 1.4
2021-07-10T01:22:07,129   Found link https://files.pythonhosted.org/packages/84/c0/8f274da33c177f6a7c6d8632d9e99413c83e6ec688825677acace41cfdb1/rnacounter-1.4.1.tar.gz#sha256=09de574fc0432a31fa66a390e3f74cf5a1fff0b5089f60a70066b75f0da427b2 (from https://pypi.org/simple/rnacounter/), version: 1.4.1
2021-07-10T01:22:07,129   Found link https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz#sha256=b38e8e2da5d5642d19104e94763ec61bc48df4150ccd1d65250d1ac15b0fb8e0 (from https://pypi.org/simple/rnacounter/), version: 1.4.2
2021-07-10T01:22:07,130   Found link https://files.pythonhosted.org/packages/46/ee/29eed438b10276db92163dff3d25bcb91f3f9e99d9a629c35ddb97f27f4d/rnacounter-1.5.tar.gz#sha256=161cf00a14dabb7bd77ec61a2d4ba13f3e88df59b02c8e9742973df7e521fb6a (from https://pypi.org/simple/rnacounter/), version: 1.5
2021-07-10T01:22:07,130   Found link https://files.pythonhosted.org/packages/a2/ea/657e7b7aa7d777173695606509933b52d794b7dbb79501a87bfea2fb511f/rnacounter-1.5.2.tar.gz#sha256=7bcb98bbde40529d94df1fb803a014ad90deff36ed0bc52781b223c7325ec84e (from https://pypi.org/simple/rnacounter/), version: 1.5.2
2021-07-10T01:22:07,130 Skipping link: not a file: https://pypi.org/simple/rnacounter/
2021-07-10T01:22:07,148 Given no hashes to check 1 links for project 'rnacounter': discarding no candidates
2021-07-10T01:22:07,166 Collecting rnacounter==1.1.3.2
2021-07-10T01:22:07,167   Created temporary directory: /tmp/pip-unpack-w6qkmhdg
2021-07-10T01:22:07,436   Downloading rnacounter-1.1.3.2.tar.gz (289 kB)
2021-07-10T01:22:07,615   Added rnacounter==1.1.3.2 from https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119 to build tracker '/tmp/pip-req-tracker-_p11sb45'
2021-07-10T01:22:07,616     Running setup.py (path:/tmp/pip-wheel-2e3st0hc/rnacounter_55eac65c74e0491db1a29e0ba6b9abfc/setup.py) egg_info for package rnacounter
2021-07-10T01:22:07,617     Created temporary directory: /tmp/pip-pip-egg-info-1a5xt_qq
2021-07-10T01:22:07,618     Running command python setup.py egg_info
2021-07-10T01:22:08,410     running egg_info
2021-07-10T01:22:08,412     creating /tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info
2021-07-10T01:22:08,413     writing /tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info/PKG-INFO
2021-07-10T01:22:08,416     writing dependency_links to /tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info/dependency_links.txt
2021-07-10T01:22:08,418     writing requirements to /tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info/requires.txt
2021-07-10T01:22:08,419     writing top-level names to /tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info/top_level.txt
2021-07-10T01:22:08,420     writing manifest file '/tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info/SOURCES.txt'
2021-07-10T01:22:08,755     reading manifest file '/tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info/SOURCES.txt'
2021-07-10T01:22:08,756     reading manifest template 'MANIFEST.in'
2021-07-10T01:22:08,765     writing manifest file '/tmp/pip-pip-egg-info-1a5xt_qq/rnacounter.egg-info/SOURCES.txt'
2021-07-10T01:22:08,840   Source in /tmp/pip-wheel-2e3st0hc/rnacounter_55eac65c74e0491db1a29e0ba6b9abfc has version 1.1.3.2, which satisfies requirement rnacounter==1.1.3.2 from https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119
2021-07-10T01:22:08,841   Removed rnacounter==1.1.3.2 from https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119 from build tracker '/tmp/pip-req-tracker-_p11sb45'
2021-07-10T01:22:08,847 Created temporary directory: /tmp/pip-unpack-2tqgmua1
2021-07-10T01:22:08,848 Building wheels for collected packages: rnacounter
2021-07-10T01:22:08,852   Created temporary directory: /tmp/pip-wheel-d3axdm13
2021-07-10T01:22:08,853   Building wheel for rnacounter (setup.py): started
2021-07-10T01:22:08,853   Destination directory: /tmp/pip-wheel-d3axdm13
2021-07-10T01:22:08,853   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2e3st0hc/rnacounter_55eac65c74e0491db1a29e0ba6b9abfc/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2e3st0hc/rnacounter_55eac65c74e0491db1a29e0ba6b9abfc/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-d3axdm13
2021-07-10T01:22:09,669   running bdist_wheel
2021-07-10T01:22:09,827   running build
2021-07-10T01:22:09,828   running build_py
2021-07-10T01:22:09,968   creating build
2021-07-10T01:22:09,968   creating build/lib.linux-armv7l-3.9
2021-07-10T01:22:09,969   creating build/lib.linux-armv7l-3.9/rnacounter
2021-07-10T01:22:09,970   copying rnacounter/main.py -> build/lib.linux-armv7l-3.9/rnacounter
2021-07-10T01:22:09,972   copying rnacounter/__init__.py -> build/lib.linux-armv7l-3.9/rnacounter
2021-07-10T01:22:09,973   copying rnacounter/setup.py -> build/lib.linux-armv7l-3.9/rnacounter
2021-07-10T01:22:09,975   running egg_info
2021-07-10T01:22:09,987   writing rnacounter.egg-info/PKG-INFO
2021-07-10T01:22:09,989   writing dependency_links to rnacounter.egg-info/dependency_links.txt
2021-07-10T01:22:09,991   writing requirements to rnacounter.egg-info/requires.txt
2021-07-10T01:22:09,992   writing top-level names to rnacounter.egg-info/top_level.txt
2021-07-10T01:22:09,998   reading manifest file 'rnacounter.egg-info/SOURCES.txt'
2021-07-10T01:22:10,000   reading manifest template 'MANIFEST.in'
2021-07-10T01:22:10,009   writing manifest file 'rnacounter.egg-info/SOURCES.txt'
2021-07-10T01:22:10,012   copying rnacounter/rnacounter.c -> build/lib.linux-armv7l-3.9/rnacounter
2021-07-10T01:22:10,047   creating build/lib.linux-armv7l-3.9/rnacounter/testfiles
2021-07-10T01:22:10,047   copying rnacounter/testfiles/gapdhKO.bam -> build/lib.linux-armv7l-3.9/rnacounter/testfiles
2021-07-10T01:22:10,052   copying rnacounter/testfiles/gapdhKO.bam.bai -> build/lib.linux-armv7l-3.9/rnacounter/testfiles
2021-07-10T01:22:10,056   copying rnacounter/testfiles/mm9_3genes_renamed.bed -> build/lib.linux-armv7l-3.9/rnacounter/testfiles
2021-07-10T01:22:10,058   copying rnacounter/testfiles/mm9_3genes_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles
2021-07-10T01:22:10,061   copying rnacounter/testfiles/mm9_Gapdh_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles
2021-07-10T01:22:10,064   running build_ext
2021-07-10T01:22:10,069   building 'rnacounter/rnacounter' extension
2021-07-10T01:22:10,069   creating build/temp.linux-armv7l-3.9
2021-07-10T01:22:10,070   creating build/temp.linux-armv7l-3.9/rnacounter
2021-07-10T01:22:10,070   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c rnacounter/rnacounter.c -o build/temp.linux-armv7l-3.9/rnacounter/rnacounter.o
2021-07-10T01:22:10,495   rnacounter/rnacounter.c:239:10: fatal error: numpy/arrayobject.h: No such file or directory
2021-07-10T01:22:10,495     239 | #include "numpy/arrayobject.h"
2021-07-10T01:22:10,495         |          ^~~~~~~~~~~~~~~~~~~~~
2021-07-10T01:22:10,495   compilation terminated.
2021-07-10T01:22:10,500   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-10T01:22:10,583   Building wheel for rnacounter (setup.py): finished with status 'error'
2021-07-10T01:22:10,584   ERROR: Failed building wheel for rnacounter
2021-07-10T01:22:10,584   Running setup.py clean for rnacounter
2021-07-10T01:22:10,585   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2e3st0hc/rnacounter_55eac65c74e0491db1a29e0ba6b9abfc/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2e3st0hc/rnacounter_55eac65c74e0491db1a29e0ba6b9abfc/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-10T01:22:11,352   running clean
2021-07-10T01:22:11,354   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-10T01:22:11,356   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-10T01:22:11,363   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-10T01:22:11,363   'build/scripts-3.9' does not exist -- can't clean it
2021-07-10T01:22:11,363   removing 'build'
2021-07-10T01:22:11,418 Failed to build rnacounter
2021-07-10T01:22:11,419 ERROR: Failed to build one or more wheels
2021-07-10T01:22:11,420 Exception information:
2021-07-10T01:22:11,420 Traceback (most recent call last):
2021-07-10T01:22:11,420   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-10T01:22:11,420     status = self.run(options, args)
2021-07-10T01:22:11,420   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-10T01:22:11,420     return func(self, options, args)
2021-07-10T01:22:11,420   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-10T01:22:11,420     raise CommandError(
2021-07-10T01:22:11,420 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-10T01:22:11,422 Removed build tracker: '/tmp/pip-req-tracker-_p11sb45'