2021-07-10T01:23:50,914 Created temporary directory: /tmp/pip-ephem-wheel-cache-xnx710vr 2021-07-10T01:23:50,917 Created temporary directory: /tmp/pip-req-tracker-5a7goxdl 2021-07-10T01:23:50,917 Initialized build tracking at /tmp/pip-req-tracker-5a7goxdl 2021-07-10T01:23:50,917 Created build tracker: /tmp/pip-req-tracker-5a7goxdl 2021-07-10T01:23:50,917 Entered build tracker: /tmp/pip-req-tracker-5a7goxdl 2021-07-10T01:23:50,918 Created temporary directory: /tmp/pip-wheel-a_9_53k3 2021-07-10T01:23:50,951 1 location(s) to search for versions of rnacounter: 2021-07-10T01:23:50,951 * https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:50,952 Fetching project page and analyzing links: https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:50,952 Getting page https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:50,954 Found index url https://pypi.org/simple 2021-07-10T01:23:51,046 Found link https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 (from https://pypi.org/simple/rnacounter/), version: 1.1.2 2021-07-10T01:23:51,046 Found link https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a (from https://pypi.org/simple/rnacounter/), version: 1.1.3.1 2021-07-10T01:23:51,047 Found link https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.2 2021-07-10T01:23:51,047 Found link https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.7 2021-07-10T01:23:51,047 Found link https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.10 2021-07-10T01:23:51,048 Found link https://files.pythonhosted.org/packages/8a/5e/1b112fc6343bf52ace3a9afaa30eabaf4338afadabf1fb97454a7556b835/rnacounter-1.2.tar.gz#sha256=d63cb98d0aa90339c2dbe27741a361f9778e9617585e04a35d078421e364ba0d (from https://pypi.org/simple/rnacounter/), version: 1.2 2021-07-10T01:23:51,048 Found link https://files.pythonhosted.org/packages/05/7d/42ecc29d98f52b77953a55da4836d36d534b317b4d66af971c9008804b61/rnacounter-1.2.1.tar.gz#sha256=cabc26fa3c1166cb190a94a4e0e642dce8747cc00bc07041a34fd895ef154b52 (from https://pypi.org/simple/rnacounter/), version: 1.2.1 2021-07-10T01:23:51,048 Found link https://files.pythonhosted.org/packages/dd/92/d53ee16c942fb78a312c03b22b0ddc08eb00ae4627f9125415a2c650b674/rnacounter-1.3.tar.gz#sha256=c45a5ae11e5a1a259d522054c688396df15d700b8389fca064e8d5fd4ee3e0f8 (from https://pypi.org/simple/rnacounter/), version: 1.3 2021-07-10T01:23:51,049 Found link https://files.pythonhosted.org/packages/49/18/a50e0e2b164272f6d13f458b43d6851766cf121b5672de12078df2bb953a/rnacounter-1.3.1.tar.gz#sha256=6a445bf59d0939a9ddf443a65402b2df6384acbfa9951c313b0c942d33ef23ce (from https://pypi.org/simple/rnacounter/), version: 1.3.1 2021-07-10T01:23:51,049 Found link https://files.pythonhosted.org/packages/ab/bf/54a012d6660528530b8404401bf494bda91947e38aae0d45ba4d721de6d4/rnacounter-1.4.tar.gz#sha256=48ef01f0d77a856dd9e9106a9185e996418366744b0950f8bc33bf2efaedb0b3 (from https://pypi.org/simple/rnacounter/), version: 1.4 2021-07-10T01:23:51,049 Found link https://files.pythonhosted.org/packages/84/c0/8f274da33c177f6a7c6d8632d9e99413c83e6ec688825677acace41cfdb1/rnacounter-1.4.1.tar.gz#sha256=09de574fc0432a31fa66a390e3f74cf5a1fff0b5089f60a70066b75f0da427b2 (from https://pypi.org/simple/rnacounter/), version: 1.4.1 2021-07-10T01:23:51,049 Found link https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz#sha256=b38e8e2da5d5642d19104e94763ec61bc48df4150ccd1d65250d1ac15b0fb8e0 (from https://pypi.org/simple/rnacounter/), version: 1.4.2 2021-07-10T01:23:51,050 Found link https://files.pythonhosted.org/packages/46/ee/29eed438b10276db92163dff3d25bcb91f3f9e99d9a629c35ddb97f27f4d/rnacounter-1.5.tar.gz#sha256=161cf00a14dabb7bd77ec61a2d4ba13f3e88df59b02c8e9742973df7e521fb6a (from https://pypi.org/simple/rnacounter/), version: 1.5 2021-07-10T01:23:51,050 Found link https://files.pythonhosted.org/packages/a2/ea/657e7b7aa7d777173695606509933b52d794b7dbb79501a87bfea2fb511f/rnacounter-1.5.2.tar.gz#sha256=7bcb98bbde40529d94df1fb803a014ad90deff36ed0bc52781b223c7325ec84e (from https://pypi.org/simple/rnacounter/), version: 1.5.2 2021-07-10T01:23:51,051 Skipping link: not a file: https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:51,068 Given no hashes to check 1 links for project 'rnacounter': discarding no candidates 2021-07-10T01:23:51,086 Collecting rnacounter==1.1.3.7 2021-07-10T01:23:51,087 Created temporary directory: /tmp/pip-unpack-tjf_fc2c 2021-07-10T01:23:51,363 Downloading rnacounter-1.1.3.7.tar.gz (289 kB) 2021-07-10T01:23:51,537 Added rnacounter==1.1.3.7 from https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 to build tracker '/tmp/pip-req-tracker-5a7goxdl' 2021-07-10T01:23:51,538 Running setup.py (path:/tmp/pip-wheel-a_9_53k3/rnacounter_0215979f23d2455f8bd317c5d96b6456/setup.py) egg_info for package rnacounter 2021-07-10T01:23:51,538 Created temporary directory: /tmp/pip-pip-egg-info-6m8rdrkn 2021-07-10T01:23:51,539 Running command python setup.py egg_info 2021-07-10T01:23:52,603 running egg_info 2021-07-10T01:23:52,605 creating /tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info 2021-07-10T01:23:52,606 writing /tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info/PKG-INFO 2021-07-10T01:23:52,609 writing dependency_links to /tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info/dependency_links.txt 2021-07-10T01:23:52,612 writing requirements to /tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info/requires.txt 2021-07-10T01:23:52,613 writing top-level names to /tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info/top_level.txt 2021-07-10T01:23:52,615 writing manifest file '/tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:52,971 reading manifest file '/tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:52,972 reading manifest template 'MANIFEST.in' 2021-07-10T01:23:52,982 writing manifest file '/tmp/pip-pip-egg-info-6m8rdrkn/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:53,087 Source in /tmp/pip-wheel-a_9_53k3/rnacounter_0215979f23d2455f8bd317c5d96b6456 has version 1.1.3.7, which satisfies requirement rnacounter==1.1.3.7 from https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 2021-07-10T01:23:53,088 Removed rnacounter==1.1.3.7 from https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 from build tracker '/tmp/pip-req-tracker-5a7goxdl' 2021-07-10T01:23:53,093 Created temporary directory: /tmp/pip-unpack-efhcm1vd 2021-07-10T01:23:53,093 Building wheels for collected packages: rnacounter 2021-07-10T01:23:53,097 Created temporary directory: /tmp/pip-wheel-8vid8fuq 2021-07-10T01:23:53,098 Building wheel for rnacounter (setup.py): started 2021-07-10T01:23:53,098 Destination directory: /tmp/pip-wheel-8vid8fuq 2021-07-10T01:23:53,098 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a_9_53k3/rnacounter_0215979f23d2455f8bd317c5d96b6456/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a_9_53k3/rnacounter_0215979f23d2455f8bd317c5d96b6456/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8vid8fuq 2021-07-10T01:23:54,195 running bdist_wheel 2021-07-10T01:23:54,384 running build 2021-07-10T01:23:54,385 running build_py 2021-07-10T01:23:54,521 creating build 2021-07-10T01:23:54,521 creating build/lib.linux-armv7l-3.9 2021-07-10T01:23:54,522 creating build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,523 copying rnacounter/main.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,525 copying rnacounter/setup.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,526 copying rnacounter/__init__.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,527 running egg_info 2021-07-10T01:23:54,543 writing rnacounter.egg-info/PKG-INFO 2021-07-10T01:23:54,544 writing dependency_links to rnacounter.egg-info/dependency_links.txt 2021-07-10T01:23:54,546 writing requirements to rnacounter.egg-info/requires.txt 2021-07-10T01:23:54,548 writing top-level names to rnacounter.egg-info/top_level.txt 2021-07-10T01:23:54,554 reading manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:54,556 reading manifest template 'MANIFEST.in' 2021-07-10T01:23:54,566 writing manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:54,569 copying rnacounter/rnacounter.c -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,609 creating build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,610 copying rnacounter/testfiles/gapdhKO.bam -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,615 copying rnacounter/testfiles/gapdhKO.bam.bai -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,620 copying rnacounter/testfiles/mm9_3genes_renamed.bed -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,624 copying rnacounter/testfiles/mm9_3genes_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,629 copying rnacounter/testfiles/mm9_Gapdh_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,633 running build_ext 2021-07-10T01:23:54,639 building 'rnacounter/rnacounter' extension 2021-07-10T01:23:54,640 creating build/temp.linux-armv7l-3.9 2021-07-10T01:23:54,641 creating build/temp.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c rnacounter/rnacounter.c -o build/temp.linux-armv7l-3.9/rnacounter/rnacounter.o 2021-07-10T01:23:55,026 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T01:23:55,026 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T01:23:55,026 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:23:55,026 from rnacounter/rnacounter.c:239: 2021-07-10T01:23:55,027 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T01:23:55,027 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T01:23:55,027 | ^~~~~~~ 2021-07-10T01:23:56,361 rnacounter/rnacounter.c: In function ‘PyInit_rnacounter’: 2021-07-10T01:23:56,382 rnacounter/rnacounter.c:29020:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,383 29020 | __pyx_type_10rnacounter_10rnacounter_Counter.tp_print = 0; 2021-07-10T01:23:56,383 | ^ 2021-07-10T01:23:56,403 rnacounter/rnacounter.c:29024:53: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,404 29024 | __pyx_type_10rnacounter_10rnacounter_GenomicObject.tp_print = 0; 2021-07-10T01:23:56,404 | ^ 2021-07-10T01:23:56,425 rnacounter/rnacounter.c:29041:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,425 29041 | __pyx_type_10rnacounter_10rnacounter_Exon.tp_print = 0; 2021-07-10T01:23:56,425 | ^ 2021-07-10T01:23:56,446 rnacounter/rnacounter.c:29047:50: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,446 29047 | __pyx_type_10rnacounter_10rnacounter_Transcript.tp_print = 0; 2021-07-10T01:23:56,446 | ^ 2021-07-10T01:23:56,467 rnacounter/rnacounter.c:29052:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,467 29052 | __pyx_type_10rnacounter_10rnacounter_Gene.tp_print = 0; 2021-07-10T01:23:56,467 | ^ 2021-07-10T01:23:56,488 rnacounter/rnacounter.c:29056:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,489 29056 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct__parse_gtf.tp_print = 0; 2021-07-10T01:23:56,489 | ^ 2021-07-10T01:23:56,509 rnacounter/rnacounter.c:29059:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,509 29059 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_1_genexpr.tp_print = 0; 2021-07-10T01:23:56,510 | ^ 2021-07-10T01:23:56,530 rnacounter/rnacounter.c:29062:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,530 29062 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_2_genexpr.tp_print = 0; 2021-07-10T01:23:56,531 | ^ 2021-07-10T01:23:56,551 rnacounter/rnacounter.c:29065:65: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,551 29065 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_3_join.tp_print = 0; 2021-07-10T01:23:56,552 | ^ 2021-07-10T01:23:56,572 rnacounter/rnacounter.c:29068:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,572 29068 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_4_genexpr.tp_print = 0; 2021-07-10T01:23:56,572 | ^ 2021-07-10T01:23:56,593 rnacounter/rnacounter.c:29071:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,593 29071 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_5_genexpr.tp_print = 0; 2021-07-10T01:23:56,593 | ^ 2021-07-10T01:23:56,614 rnacounter/rnacounter.c:29074:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,614 29074 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_6_genexpr.tp_print = 0; 2021-07-10T01:23:56,614 | ^ 2021-07-10T01:23:56,635 rnacounter/rnacounter.c:29077:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,635 29077 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_7_process_chunk.tp_print = 0; 2021-07-10T01:23:56,635 | ^ 2021-07-10T01:23:56,656 rnacounter/rnacounter.c:29080:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,656 29080 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_8_genexpr.tp_print = 0; 2021-07-10T01:23:56,656 | ^ 2021-07-10T01:23:56,677 rnacounter/rnacounter.c:29083:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,677 29083 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_9_genexpr.tp_print = 0; 2021-07-10T01:23:56,677 | ^ 2021-07-10T01:23:56,698 rnacounter/rnacounter.c:29086:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,698 29086 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_10_genexpr.tp_print = 0; 2021-07-10T01:23:56,698 | ^ 2021-07-10T01:23:56,719 rnacounter/rnacounter.c:29089:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,719 29089 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_11_genexpr.tp_print = 0; 2021-07-10T01:23:56,720 | ^ 2021-07-10T01:23:56,740 rnacounter/rnacounter.c:29092:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,741 29092 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_12_print_output.tp_print = 0; 2021-07-10T01:23:56,741 | ^ 2021-07-10T01:23:56,761 rnacounter/rnacounter.c:29095:72: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,762 29095 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_13_parse_args.tp_print = 0; 2021-07-10T01:23:56,762 | ^ 2021-07-10T01:23:56,782 rnacounter/rnacounter.c:29098:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,783 29098 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_14_genexpr.tp_print = 0; 2021-07-10T01:23:56,783 | ^ 2021-07-10T01:23:56,803 rnacounter/rnacounter.c:29101:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,804 29101 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_15_genexpr.tp_print = 0; 2021-07-10T01:23:56,804 | ^ 2021-07-10T01:23:56,824 rnacounter/rnacounter.c:29104:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,824 29104 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_16_genexpr.tp_print = 0; 2021-07-10T01:23:56,825 | ^ 2021-07-10T01:23:56,972 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSave’: 2021-07-10T01:23:57,011 rnacounter/rnacounter.c:29926:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:57,011 29926 | *type = tstate->exc_type; 2021-07-10T01:23:57,011 | ^~~~~~~~ 2021-07-10T01:23:57,011 | curexc_type 2021-07-10T01:23:57,049 rnacounter/rnacounter.c:29927:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:57,049 29927 | *value = tstate->exc_value; 2021-07-10T01:23:57,049 | ^~~~~~~~~ 2021-07-10T01:23:57,049 | curexc_value 2021-07-10T01:23:57,087 rnacounter/rnacounter.c:29928:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:57,088 29928 | *tb = tstate->exc_traceback; 2021-07-10T01:23:57,088 | ^~~~~~~~~~~~~ 2021-07-10T01:23:57,088 | curexc_traceback 2021-07-10T01:23:57,088 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionReset’: 2021-07-10T01:23:57,126 rnacounter/rnacounter.c:29940:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:57,126 29940 | tmp_type = tstate->exc_type; 2021-07-10T01:23:57,126 | ^~~~~~~~ 2021-07-10T01:23:57,126 | curexc_type 2021-07-10T01:23:57,164 rnacounter/rnacounter.c:29941:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:57,164 29941 | tmp_value = tstate->exc_value; 2021-07-10T01:23:57,165 | ^~~~~~~~~ 2021-07-10T01:23:57,165 | curexc_value 2021-07-10T01:23:57,203 rnacounter/rnacounter.c:29942:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:57,203 29942 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:23:57,203 | ^~~~~~~~~~~~~ 2021-07-10T01:23:57,203 | curexc_traceback 2021-07-10T01:23:57,241 rnacounter/rnacounter.c:29943:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:57,241 29943 | tstate->exc_type = type; 2021-07-10T01:23:57,242 | ^~~~~~~~ 2021-07-10T01:23:57,242 | curexc_type 2021-07-10T01:23:57,280 rnacounter/rnacounter.c:29944:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:57,280 29944 | tstate->exc_value = value; 2021-07-10T01:23:57,280 | ^~~~~~~~~ 2021-07-10T01:23:57,280 | curexc_value 2021-07-10T01:23:57,318 rnacounter/rnacounter.c:29945:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:57,319 29945 | tstate->exc_traceback = tb; 2021-07-10T01:23:57,319 | ^~~~~~~~~~~~~ 2021-07-10T01:23:57,319 | curexc_traceback 2021-07-10T01:23:57,328 rnacounter/rnacounter.c: In function ‘__Pyx_GetException’: 2021-07-10T01:23:57,367 rnacounter/rnacounter.c:29988:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:57,367 29988 | tmp_type = tstate->exc_type; 2021-07-10T01:23:57,367 | ^~~~~~~~ 2021-07-10T01:23:57,368 | curexc_type 2021-07-10T01:23:57,406 rnacounter/rnacounter.c:29989:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:57,406 29989 | tmp_value = tstate->exc_value; 2021-07-10T01:23:57,406 | ^~~~~~~~~ 2021-07-10T01:23:57,406 | curexc_value 2021-07-10T01:23:57,444 rnacounter/rnacounter.c:29990:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:57,445 29990 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:23:57,445 | ^~~~~~~~~~~~~ 2021-07-10T01:23:57,445 | curexc_traceback 2021-07-10T01:23:57,483 rnacounter/rnacounter.c:29991:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:57,484 29991 | tstate->exc_type = local_type; 2021-07-10T01:23:57,484 | ^~~~~~~~ 2021-07-10T01:23:57,484 | curexc_type 2021-07-10T01:23:57,522 rnacounter/rnacounter.c:29992:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:57,522 29992 | tstate->exc_value = local_value; 2021-07-10T01:23:57,522 | ^~~~~~~~~ 2021-07-10T01:23:57,522 | curexc_value 2021-07-10T01:23:57,561 rnacounter/rnacounter.c:29993:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:57,561 29993 | tstate->exc_traceback = local_tb; 2021-07-10T01:23:57,561 | ^~~~~~~~~~~~~ 2021-07-10T01:23:57,561 | curexc_traceback 2021-07-10T01:23:57,571 rnacounter/rnacounter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T01:23:57,592 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,593 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,593 | ^ 2021-07-10T01:23:57,593 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,593 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,593 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,593 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,593 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,594 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,619 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,619 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,619 | ^ 2021-07-10T01:23:57,619 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,620 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,620 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,620 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,620 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,620 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,645 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,646 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,646 | ^ 2021-07-10T01:23:57,646 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,646 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,646 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,646 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,646 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,647 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,672 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,672 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,672 | ^ 2021-07-10T01:23:57,672 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,672 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,672 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,673 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,673 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,673 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,698 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,698 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,698 | ^ 2021-07-10T01:23:57,698 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,699 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,699 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,699 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,699 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,699 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,724 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,724 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,724 | ^ 2021-07-10T01:23:57,725 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,725 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,725 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,725 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,725 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,725 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,755 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,755 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,755 | ^ 2021-07-10T01:23:57,755 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,755 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,756 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,756 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,756 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,756 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,781 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,781 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,781 | ^ 2021-07-10T01:23:57,781 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,781 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,781 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,782 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,782 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,782 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,807 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,807 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,807 | ^ 2021-07-10T01:23:57,807 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,808 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,808 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,808 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,808 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,808 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,833 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,833 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,833 | ^ 2021-07-10T01:23:57,833 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,833 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,834 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,834 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,834 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,834 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,859 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,859 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,859 | ^ 2021-07-10T01:23:57,859 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,859 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,860 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,860 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,860 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,860 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,885 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,885 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,885 | ^ 2021-07-10T01:23:57,885 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,885 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,886 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,886 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,886 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,886 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:58,466 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_Call’: 2021-07-10T01:23:58,489 rnacounter/rnacounter.c:31926:2: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:58,489 31926 | return PyCFunction_Call(func, arg, kw); 2021-07-10T01:23:58,489 | ^~~~~~ 2021-07-10T01:23:58,489 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:23:58,490 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:58,490 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:23:58,490 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:23:58,490 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:23:58,490 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_init’: 2021-07-10T01:23:58,513 rnacounter/rnacounter.c:31991:5: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:58,513 31991 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2021-07-10T01:23:58,513 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:58,513 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:23:58,513 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:58,514 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:23:58,514 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:23:58,514 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:23:58,637 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-10T01:23:58,679 rnacounter/rnacounter.c:32818:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:58,679 32818 | tmp_type = tstate->exc_type; 2021-07-10T01:23:58,680 | ^~~~~~~~ 2021-07-10T01:23:58,680 | curexc_type 2021-07-10T01:23:58,721 rnacounter/rnacounter.c:32819:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:58,721 32819 | tmp_value = tstate->exc_value; 2021-07-10T01:23:58,721 | ^~~~~~~~~ 2021-07-10T01:23:58,722 | curexc_value 2021-07-10T01:23:58,763 rnacounter/rnacounter.c:32820:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:58,763 32820 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:23:58,763 | ^~~~~~~~~~~~~ 2021-07-10T01:23:58,763 | curexc_traceback 2021-07-10T01:23:58,805 rnacounter/rnacounter.c:32821:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:58,805 32821 | tstate->exc_type = *type; 2021-07-10T01:23:58,805 | ^~~~~~~~ 2021-07-10T01:23:58,805 | curexc_type 2021-07-10T01:23:58,847 rnacounter/rnacounter.c:32822:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:58,848 32822 | tstate->exc_value = *value; 2021-07-10T01:23:58,848 | ^~~~~~~~~ 2021-07-10T01:23:58,848 | curexc_value 2021-07-10T01:23:58,889 rnacounter/rnacounter.c:32823:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:58,890 32823 | tstate->exc_traceback = *tb; 2021-07-10T01:23:58,890 | ^~~~~~~~~~~~~ 2021-07-10T01:23:58,890 | curexc_traceback 2021-07-10T01:23:59,390 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T01:23:59,391 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:23:59,391 from rnacounter/rnacounter.c:239: 2021-07-10T01:23:59,391 At top level: 2021-07-10T01:23:59,391 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T01:23:59,392 1464 | _import_array(void) 2021-07-10T01:23:59,392 | ^~~~~~~~~~~~~ 2021-07-10T01:23:59,407 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T01:23:59,516 Building wheel for rnacounter (setup.py): finished with status 'error' 2021-07-10T01:23:59,516 ERROR: Failed building wheel for rnacounter 2021-07-10T01:23:59,517 Running setup.py clean for rnacounter 2021-07-10T01:23:59,517 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a_9_53k3/rnacounter_0215979f23d2455f8bd317c5d96b6456/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a_9_53k3/rnacounter_0215979f23d2455f8bd317c5d96b6456/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T01:24:00,535 running clean 2021-07-10T01:24:00,536 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:24:00,538 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:24:00,544 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T01:24:00,544 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T01:24:00,544 removing 'build' 2021-07-10T01:24:00,629 Failed to build rnacounter 2021-07-10T01:24:00,630 ERROR: Failed to build one or more wheels 2021-07-10T01:24:00,630 Exception information: 2021-07-10T01:24:00,630 Traceback (most recent call last): 2021-07-10T01:24:00,630 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T01:24:00,630 status = self.run(options, args) 2021-07-10T01:24:00,630 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T01:24:00,630 return func(self, options, args) 2021-07-10T01:24:00,630 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T01:24:00,630 raise CommandError( 2021-07-10T01:24:00,630 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T01:24:00,633 Removed build tracker: '/tmp/pip-req-tracker-5a7goxdl'