2021-07-10T01:23:50,941 Created temporary directory: /tmp/pip-ephem-wheel-cache-p56byoze 2021-07-10T01:23:50,944 Created temporary directory: /tmp/pip-req-tracker-vjd_wz43 2021-07-10T01:23:50,944 Initialized build tracking at /tmp/pip-req-tracker-vjd_wz43 2021-07-10T01:23:50,944 Created build tracker: /tmp/pip-req-tracker-vjd_wz43 2021-07-10T01:23:50,944 Entered build tracker: /tmp/pip-req-tracker-vjd_wz43 2021-07-10T01:23:50,945 Created temporary directory: /tmp/pip-wheel-6l6oeqa5 2021-07-10T01:23:50,978 1 location(s) to search for versions of rnacounter: 2021-07-10T01:23:50,978 * https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:50,979 Fetching project page and analyzing links: https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:50,979 Getting page https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:50,981 Found index url https://pypi.org/simple 2021-07-10T01:23:51,073 Found link https://files.pythonhosted.org/packages/8f/49/762bb78c6a1215e30ccd9702444375015a50b14847266db0c2f11219e78f/rnacounter-1.1.2.tar.gz#sha256=7e542679e8e9c80380d63e1a60d9131572a3e0569f6058af572574a7f4d55856 (from https://pypi.org/simple/rnacounter/), version: 1.1.2 2021-07-10T01:23:51,074 Found link https://files.pythonhosted.org/packages/04/c4/e2924af98cbf63c98cc5a9d210c3c54d959cf961fba4df5da3972afc84ae/rnacounter-1.1.3.1.tar.gz#sha256=6f87205f96cbe5e9ae2c0833f75e66f84ab036a389cf229887fbb9ab76bc845a (from https://pypi.org/simple/rnacounter/), version: 1.1.3.1 2021-07-10T01:23:51,074 Found link https://files.pythonhosted.org/packages/39/70/41efc4ca6703ffdbdbab1dcd66976ed9a30c363b6f5ba417501e2dd9fb00/rnacounter-1.1.3.2.tar.gz#sha256=faa4afc97daeea8658666a11a89c5671845acdeee998da950f4afdd887e60119 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.2 2021-07-10T01:23:51,074 Found link https://files.pythonhosted.org/packages/b1/1c/9f8deaa78b994019b9024043168567099fe010c79018373e2f6ed60ea646/rnacounter-1.1.3.7.tar.gz#sha256=95aade7f65f42577e8f6a2ef586b82e298a761d7e74d216d5405d10b626de880 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.7 2021-07-10T01:23:51,075 Found link https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 (from https://pypi.org/simple/rnacounter/), version: 1.1.3.10 2021-07-10T01:23:51,075 Found link https://files.pythonhosted.org/packages/8a/5e/1b112fc6343bf52ace3a9afaa30eabaf4338afadabf1fb97454a7556b835/rnacounter-1.2.tar.gz#sha256=d63cb98d0aa90339c2dbe27741a361f9778e9617585e04a35d078421e364ba0d (from https://pypi.org/simple/rnacounter/), version: 1.2 2021-07-10T01:23:51,075 Found link https://files.pythonhosted.org/packages/05/7d/42ecc29d98f52b77953a55da4836d36d534b317b4d66af971c9008804b61/rnacounter-1.2.1.tar.gz#sha256=cabc26fa3c1166cb190a94a4e0e642dce8747cc00bc07041a34fd895ef154b52 (from https://pypi.org/simple/rnacounter/), version: 1.2.1 2021-07-10T01:23:51,075 Found link https://files.pythonhosted.org/packages/dd/92/d53ee16c942fb78a312c03b22b0ddc08eb00ae4627f9125415a2c650b674/rnacounter-1.3.tar.gz#sha256=c45a5ae11e5a1a259d522054c688396df15d700b8389fca064e8d5fd4ee3e0f8 (from https://pypi.org/simple/rnacounter/), version: 1.3 2021-07-10T01:23:51,076 Found link https://files.pythonhosted.org/packages/49/18/a50e0e2b164272f6d13f458b43d6851766cf121b5672de12078df2bb953a/rnacounter-1.3.1.tar.gz#sha256=6a445bf59d0939a9ddf443a65402b2df6384acbfa9951c313b0c942d33ef23ce (from https://pypi.org/simple/rnacounter/), version: 1.3.1 2021-07-10T01:23:51,076 Found link https://files.pythonhosted.org/packages/ab/bf/54a012d6660528530b8404401bf494bda91947e38aae0d45ba4d721de6d4/rnacounter-1.4.tar.gz#sha256=48ef01f0d77a856dd9e9106a9185e996418366744b0950f8bc33bf2efaedb0b3 (from https://pypi.org/simple/rnacounter/), version: 1.4 2021-07-10T01:23:51,076 Found link https://files.pythonhosted.org/packages/84/c0/8f274da33c177f6a7c6d8632d9e99413c83e6ec688825677acace41cfdb1/rnacounter-1.4.1.tar.gz#sha256=09de574fc0432a31fa66a390e3f74cf5a1fff0b5089f60a70066b75f0da427b2 (from https://pypi.org/simple/rnacounter/), version: 1.4.1 2021-07-10T01:23:51,076 Found link https://files.pythonhosted.org/packages/45/3a/3cc530b864e9fbd87542c73df418d091aeaeb7b73863fb206e62494d988e/rnacounter-1.4.2.tar.gz#sha256=b38e8e2da5d5642d19104e94763ec61bc48df4150ccd1d65250d1ac15b0fb8e0 (from https://pypi.org/simple/rnacounter/), version: 1.4.2 2021-07-10T01:23:51,077 Found link https://files.pythonhosted.org/packages/46/ee/29eed438b10276db92163dff3d25bcb91f3f9e99d9a629c35ddb97f27f4d/rnacounter-1.5.tar.gz#sha256=161cf00a14dabb7bd77ec61a2d4ba13f3e88df59b02c8e9742973df7e521fb6a (from https://pypi.org/simple/rnacounter/), version: 1.5 2021-07-10T01:23:51,077 Found link https://files.pythonhosted.org/packages/a2/ea/657e7b7aa7d777173695606509933b52d794b7dbb79501a87bfea2fb511f/rnacounter-1.5.2.tar.gz#sha256=7bcb98bbde40529d94df1fb803a014ad90deff36ed0bc52781b223c7325ec84e (from https://pypi.org/simple/rnacounter/), version: 1.5.2 2021-07-10T01:23:51,077 Skipping link: not a file: https://pypi.org/simple/rnacounter/ 2021-07-10T01:23:51,095 Given no hashes to check 1 links for project 'rnacounter': discarding no candidates 2021-07-10T01:23:51,113 Collecting rnacounter==1.1.3.10 2021-07-10T01:23:51,114 Created temporary directory: /tmp/pip-unpack-y1gbs9_7 2021-07-10T01:23:51,341 Downloading rnacounter-1.1.3.10.tar.gz (289 kB) 2021-07-10T01:23:51,507 Added rnacounter==1.1.3.10 from https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 to build tracker '/tmp/pip-req-tracker-vjd_wz43' 2021-07-10T01:23:51,508 Running setup.py (path:/tmp/pip-wheel-6l6oeqa5/rnacounter_4c0d241f4b6744f2b3f99f1b874551b4/setup.py) egg_info for package rnacounter 2021-07-10T01:23:51,509 Created temporary directory: /tmp/pip-pip-egg-info-6i0b5t0t 2021-07-10T01:23:51,509 Running command python setup.py egg_info 2021-07-10T01:23:52,574 running egg_info 2021-07-10T01:23:52,576 creating /tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info 2021-07-10T01:23:52,577 writing /tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info/PKG-INFO 2021-07-10T01:23:52,580 writing dependency_links to /tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info/dependency_links.txt 2021-07-10T01:23:52,582 writing requirements to /tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info/requires.txt 2021-07-10T01:23:52,583 writing top-level names to /tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info/top_level.txt 2021-07-10T01:23:52,584 writing manifest file '/tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:52,937 reading manifest file '/tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:52,939 reading manifest template 'MANIFEST.in' 2021-07-10T01:23:52,948 writing manifest file '/tmp/pip-pip-egg-info-6i0b5t0t/rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:53,054 Source in /tmp/pip-wheel-6l6oeqa5/rnacounter_4c0d241f4b6744f2b3f99f1b874551b4 has version 1.1.3.10, which satisfies requirement rnacounter==1.1.3.10 from https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 2021-07-10T01:23:53,055 Removed rnacounter==1.1.3.10 from https://files.pythonhosted.org/packages/14/a1/be9b12f40d130b182ed0d5d01b36f76e6089805a5c945d77941f5eb0928e/rnacounter-1.1.3.10.tar.gz#sha256=0411fcc0609563a01fb0c735dc70293898fb773ae63484ce248395327cbe2716 from build tracker '/tmp/pip-req-tracker-vjd_wz43' 2021-07-10T01:23:53,059 Created temporary directory: /tmp/pip-unpack-d6a66coo 2021-07-10T01:23:53,060 Building wheels for collected packages: rnacounter 2021-07-10T01:23:53,064 Created temporary directory: /tmp/pip-wheel-43ptucw7 2021-07-10T01:23:53,065 Building wheel for rnacounter (setup.py): started 2021-07-10T01:23:53,065 Destination directory: /tmp/pip-wheel-43ptucw7 2021-07-10T01:23:53,066 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6l6oeqa5/rnacounter_4c0d241f4b6744f2b3f99f1b874551b4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6l6oeqa5/rnacounter_4c0d241f4b6744f2b3f99f1b874551b4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-43ptucw7 2021-07-10T01:23:54,169 running bdist_wheel 2021-07-10T01:23:54,357 running build 2021-07-10T01:23:54,357 running build_py 2021-07-10T01:23:54,492 creating build 2021-07-10T01:23:54,493 creating build/lib.linux-armv7l-3.9 2021-07-10T01:23:54,493 creating build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,494 copying rnacounter/setup.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,496 copying rnacounter/__init__.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,498 copying rnacounter/main.py -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,499 running egg_info 2021-07-10T01:23:54,512 writing rnacounter.egg-info/PKG-INFO 2021-07-10T01:23:54,514 writing dependency_links to rnacounter.egg-info/dependency_links.txt 2021-07-10T01:23:54,515 writing requirements to rnacounter.egg-info/requires.txt 2021-07-10T01:23:54,516 writing top-level names to rnacounter.egg-info/top_level.txt 2021-07-10T01:23:54,522 reading manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:54,524 reading manifest template 'MANIFEST.in' 2021-07-10T01:23:54,534 writing manifest file 'rnacounter.egg-info/SOURCES.txt' 2021-07-10T01:23:54,536 copying rnacounter/rnacounter.c -> build/lib.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,576 creating build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,577 copying rnacounter/testfiles/gapdhKO.bam -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,583 copying rnacounter/testfiles/gapdhKO.bam.bai -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,588 copying rnacounter/testfiles/mm9_3genes_renamed.bed -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,591 copying rnacounter/testfiles/mm9_3genes_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,595 copying rnacounter/testfiles/mm9_Gapdh_renamed.gtf -> build/lib.linux-armv7l-3.9/rnacounter/testfiles 2021-07-10T01:23:54,599 running build_ext 2021-07-10T01:23:54,604 building 'rnacounter/rnacounter' extension 2021-07-10T01:23:54,604 creating build/temp.linux-armv7l-3.9 2021-07-10T01:23:54,605 creating build/temp.linux-armv7l-3.9/rnacounter 2021-07-10T01:23:54,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c rnacounter/rnacounter.c -o build/temp.linux-armv7l-3.9/rnacounter/rnacounter.o 2021-07-10T01:23:54,989 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-10T01:23:54,989 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T01:23:54,990 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:23:54,990 from rnacounter/rnacounter.c:239: 2021-07-10T01:23:54,990 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T01:23:54,990 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T01:23:54,990 | ^~~~~~~ 2021-07-10T01:23:56,133 rnacounter/rnacounter.c: In function ‘PyInit_rnacounter’: 2021-07-10T01:23:56,149 rnacounter/rnacounter.c:29020:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,149 29020 | __pyx_type_10rnacounter_10rnacounter_Counter.tp_print = 0; 2021-07-10T01:23:56,149 | ^ 2021-07-10T01:23:56,164 rnacounter/rnacounter.c:29024:53: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,165 29024 | __pyx_type_10rnacounter_10rnacounter_GenomicObject.tp_print = 0; 2021-07-10T01:23:56,165 | ^ 2021-07-10T01:23:56,181 rnacounter/rnacounter.c:29041:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,181 29041 | __pyx_type_10rnacounter_10rnacounter_Exon.tp_print = 0; 2021-07-10T01:23:56,181 | ^ 2021-07-10T01:23:56,196 rnacounter/rnacounter.c:29047:50: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,197 29047 | __pyx_type_10rnacounter_10rnacounter_Transcript.tp_print = 0; 2021-07-10T01:23:56,197 | ^ 2021-07-10T01:23:56,212 rnacounter/rnacounter.c:29052:44: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,212 29052 | __pyx_type_10rnacounter_10rnacounter_Gene.tp_print = 0; 2021-07-10T01:23:56,212 | ^ 2021-07-10T01:23:56,228 rnacounter/rnacounter.c:29056:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,228 29056 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct__parse_gtf.tp_print = 0; 2021-07-10T01:23:56,228 | ^ 2021-07-10T01:23:56,243 rnacounter/rnacounter.c:29059:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,244 29059 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_1_genexpr.tp_print = 0; 2021-07-10T01:23:56,244 | ^ 2021-07-10T01:23:56,259 rnacounter/rnacounter.c:29062:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,259 29062 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_2_genexpr.tp_print = 0; 2021-07-10T01:23:56,259 | ^ 2021-07-10T01:23:56,275 rnacounter/rnacounter.c:29065:65: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,275 29065 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_3_join.tp_print = 0; 2021-07-10T01:23:56,275 | ^ 2021-07-10T01:23:56,290 rnacounter/rnacounter.c:29068:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,290 29068 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_4_genexpr.tp_print = 0; 2021-07-10T01:23:56,291 | ^ 2021-07-10T01:23:56,306 rnacounter/rnacounter.c:29071:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,306 29071 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_5_genexpr.tp_print = 0; 2021-07-10T01:23:56,306 | ^ 2021-07-10T01:23:56,321 rnacounter/rnacounter.c:29074:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,322 29074 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_6_genexpr.tp_print = 0; 2021-07-10T01:23:56,322 | ^ 2021-07-10T01:23:56,337 rnacounter/rnacounter.c:29077:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,337 29077 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_7_process_chunk.tp_print = 0; 2021-07-10T01:23:56,337 | ^ 2021-07-10T01:23:56,353 rnacounter/rnacounter.c:29080:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,353 29080 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_8_genexpr.tp_print = 0; 2021-07-10T01:23:56,353 | ^ 2021-07-10T01:23:56,368 rnacounter/rnacounter.c:29083:68: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,369 29083 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_9_genexpr.tp_print = 0; 2021-07-10T01:23:56,369 | ^ 2021-07-10T01:23:56,384 rnacounter/rnacounter.c:29086:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,384 29086 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_10_genexpr.tp_print = 0; 2021-07-10T01:23:56,384 | ^ 2021-07-10T01:23:56,400 rnacounter/rnacounter.c:29089:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,400 29089 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_11_genexpr.tp_print = 0; 2021-07-10T01:23:56,400 | ^ 2021-07-10T01:23:56,415 rnacounter/rnacounter.c:29092:74: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,415 29092 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_12_print_output.tp_print = 0; 2021-07-10T01:23:56,416 | ^ 2021-07-10T01:23:56,431 rnacounter/rnacounter.c:29095:72: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,431 29095 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_13_parse_args.tp_print = 0; 2021-07-10T01:23:56,431 | ^ 2021-07-10T01:23:56,446 rnacounter/rnacounter.c:29098:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,447 29098 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_14_genexpr.tp_print = 0; 2021-07-10T01:23:56,447 | ^ 2021-07-10T01:23:56,462 rnacounter/rnacounter.c:29101:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,462 29101 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_15_genexpr.tp_print = 0; 2021-07-10T01:23:56,462 | ^ 2021-07-10T01:23:56,478 rnacounter/rnacounter.c:29104:69: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T01:23:56,478 29104 | __pyx_type_10rnacounter_10rnacounter___pyx_scope_struct_16_genexpr.tp_print = 0; 2021-07-10T01:23:56,478 | ^ 2021-07-10T01:23:56,592 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSave’: 2021-07-10T01:23:56,620 rnacounter/rnacounter.c:29926:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:56,621 29926 | *type = tstate->exc_type; 2021-07-10T01:23:56,621 | ^~~~~~~~ 2021-07-10T01:23:56,621 | curexc_type 2021-07-10T01:23:56,649 rnacounter/rnacounter.c:29927:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:56,649 29927 | *value = tstate->exc_value; 2021-07-10T01:23:56,649 | ^~~~~~~~~ 2021-07-10T01:23:56,649 | curexc_value 2021-07-10T01:23:56,678 rnacounter/rnacounter.c:29928:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:56,678 29928 | *tb = tstate->exc_traceback; 2021-07-10T01:23:56,678 | ^~~~~~~~~~~~~ 2021-07-10T01:23:56,678 | curexc_traceback 2021-07-10T01:23:56,678 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionReset’: 2021-07-10T01:23:56,706 rnacounter/rnacounter.c:29940:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:56,707 29940 | tmp_type = tstate->exc_type; 2021-07-10T01:23:56,707 | ^~~~~~~~ 2021-07-10T01:23:56,707 | curexc_type 2021-07-10T01:23:56,735 rnacounter/rnacounter.c:29941:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:56,735 29941 | tmp_value = tstate->exc_value; 2021-07-10T01:23:56,735 | ^~~~~~~~~ 2021-07-10T01:23:56,735 | curexc_value 2021-07-10T01:23:56,764 rnacounter/rnacounter.c:29942:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:56,764 29942 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:23:56,764 | ^~~~~~~~~~~~~ 2021-07-10T01:23:56,764 | curexc_traceback 2021-07-10T01:23:56,792 rnacounter/rnacounter.c:29943:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:56,792 29943 | tstate->exc_type = type; 2021-07-10T01:23:56,792 | ^~~~~~~~ 2021-07-10T01:23:56,793 | curexc_type 2021-07-10T01:23:56,821 rnacounter/rnacounter.c:29944:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:56,821 29944 | tstate->exc_value = value; 2021-07-10T01:23:56,821 | ^~~~~~~~~ 2021-07-10T01:23:56,821 | curexc_value 2021-07-10T01:23:56,849 rnacounter/rnacounter.c:29945:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:56,849 29945 | tstate->exc_traceback = tb; 2021-07-10T01:23:56,850 | ^~~~~~~~~~~~~ 2021-07-10T01:23:56,850 | curexc_traceback 2021-07-10T01:23:56,856 rnacounter/rnacounter.c: In function ‘__Pyx_GetException’: 2021-07-10T01:23:56,885 rnacounter/rnacounter.c:29988:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:56,885 29988 | tmp_type = tstate->exc_type; 2021-07-10T01:23:56,885 | ^~~~~~~~ 2021-07-10T01:23:56,885 | curexc_type 2021-07-10T01:23:56,914 rnacounter/rnacounter.c:29989:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:56,914 29989 | tmp_value = tstate->exc_value; 2021-07-10T01:23:56,914 | ^~~~~~~~~ 2021-07-10T01:23:56,914 | curexc_value 2021-07-10T01:23:56,942 rnacounter/rnacounter.c:29990:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:56,942 29990 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:23:56,942 | ^~~~~~~~~~~~~ 2021-07-10T01:23:56,943 | curexc_traceback 2021-07-10T01:23:56,971 rnacounter/rnacounter.c:29991:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:56,971 29991 | tstate->exc_type = local_type; 2021-07-10T01:23:56,971 | ^~~~~~~~ 2021-07-10T01:23:56,971 | curexc_type 2021-07-10T01:23:56,999 rnacounter/rnacounter.c:29992:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:56,999 29992 | tstate->exc_value = local_value; 2021-07-10T01:23:57,000 | ^~~~~~~~~ 2021-07-10T01:23:57,000 | curexc_value 2021-07-10T01:23:57,028 rnacounter/rnacounter.c:29993:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:57,028 29993 | tstate->exc_traceback = local_tb; 2021-07-10T01:23:57,028 | ^~~~~~~~~~~~~ 2021-07-10T01:23:57,028 | curexc_traceback 2021-07-10T01:23:57,036 rnacounter/rnacounter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T01:23:57,052 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,052 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,052 | ^ 2021-07-10T01:23:57,052 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,052 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,053 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,053 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,053 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,053 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,071 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,072 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,072 | ^ 2021-07-10T01:23:57,072 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,072 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,072 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,072 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,073 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,073 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,091 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,091 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,091 | ^ 2021-07-10T01:23:57,091 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,091 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,092 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,092 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,092 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,092 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,110 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,110 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,110 | ^ 2021-07-10T01:23:57,110 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,111 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,111 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,111 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,111 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,111 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,129 rnacounter/rnacounter.c:30097:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,129 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,129 | ^ 2021-07-10T01:23:57,130 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,130 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,130 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,130 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,130 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,130 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,148 rnacounter/rnacounter.c:30097:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,149 30097 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,149 | ^ 2021-07-10T01:23:57,149 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,149 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,149 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,149 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,149 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,149 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,172 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,172 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,172 | ^ 2021-07-10T01:23:57,172 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,172 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,172 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,173 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,173 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,173 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,191 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,191 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,191 | ^ 2021-07-10T01:23:57,192 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,192 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,192 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,192 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,192 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,192 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,211 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,211 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,211 | ^ 2021-07-10T01:23:57,211 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,211 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,211 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,212 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,212 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,212 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,230 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,231 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,231 | ^ 2021-07-10T01:23:57,231 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,231 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,231 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,231 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,231 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,231 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,250 rnacounter/rnacounter.c:30113:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,250 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,250 | ^ 2021-07-10T01:23:57,250 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,251 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,251 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,251 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:23:57,251 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:23:57,251 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,269 rnacounter/rnacounter.c:30113:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,270 30113 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:23:57,270 | ^ 2021-07-10T01:23:57,270 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:23:57,270 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:23:57,270 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,270 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:23:57,270 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:23:57,271 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,708 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_Call’: 2021-07-10T01:23:57,725 rnacounter/rnacounter.c:31926:2: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,725 31926 | return PyCFunction_Call(func, arg, kw); 2021-07-10T01:23:57,725 | ^~~~~~ 2021-07-10T01:23:57,726 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:23:57,726 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,726 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:23:57,726 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:23:57,726 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,726 rnacounter/rnacounter.c: In function ‘__Pyx_CyFunction_init’: 2021-07-10T01:23:57,743 rnacounter/rnacounter.c:31991:5: warning: ‘PyCFunction_Call’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:23:57,743 31991 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2021-07-10T01:23:57,743 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,743 In file included from /usr/include/python3.9/Python.h:111, 2021-07-10T01:23:57,744 from rnacounter/rnacounter.c:16: 2021-07-10T01:23:57,744 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-10T01:23:57,744 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-10T01:23:57,744 | ^~~~~~~~~~~~~~~~ 2021-07-10T01:23:57,838 rnacounter/rnacounter.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-10T01:23:57,869 rnacounter/rnacounter.c:32818:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:57,870 32818 | tmp_type = tstate->exc_type; 2021-07-10T01:23:57,870 | ^~~~~~~~ 2021-07-10T01:23:57,870 | curexc_type 2021-07-10T01:23:57,900 rnacounter/rnacounter.c:32819:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:57,901 32819 | tmp_value = tstate->exc_value; 2021-07-10T01:23:57,901 | ^~~~~~~~~ 2021-07-10T01:23:57,901 | curexc_value 2021-07-10T01:23:57,932 rnacounter/rnacounter.c:32820:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:57,932 32820 | tmp_tb = tstate->exc_traceback; 2021-07-10T01:23:57,932 | ^~~~~~~~~~~~~ 2021-07-10T01:23:57,932 | curexc_traceback 2021-07-10T01:23:57,963 rnacounter/rnacounter.c:32821:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T01:23:57,963 32821 | tstate->exc_type = *type; 2021-07-10T01:23:57,963 | ^~~~~~~~ 2021-07-10T01:23:57,963 | curexc_type 2021-07-10T01:23:57,994 rnacounter/rnacounter.c:32822:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T01:23:57,994 32822 | tstate->exc_value = *value; 2021-07-10T01:23:57,994 | ^~~~~~~~~ 2021-07-10T01:23:57,994 | curexc_value 2021-07-10T01:23:58,025 rnacounter/rnacounter.c:32823:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T01:23:58,025 32823 | tstate->exc_traceback = *tb; 2021-07-10T01:23:58,025 | ^~~~~~~~~~~~~ 2021-07-10T01:23:58,025 | curexc_traceback 2021-07-10T01:23:58,480 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T01:23:58,481 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:23:58,481 from rnacounter/rnacounter.c:239: 2021-07-10T01:23:58,481 At top level: 2021-07-10T01:23:58,481 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T01:23:58,481 1463 | _import_array(void) 2021-07-10T01:23:58,482 | ^~~~~~~~~~~~~ 2021-07-10T01:23:58,490 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T01:23:58,608 Building wheel for rnacounter (setup.py): finished with status 'error' 2021-07-10T01:23:58,609 ERROR: Failed building wheel for rnacounter 2021-07-10T01:23:58,609 Running setup.py clean for rnacounter 2021-07-10T01:23:58,610 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6l6oeqa5/rnacounter_4c0d241f4b6744f2b3f99f1b874551b4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6l6oeqa5/rnacounter_4c0d241f4b6744f2b3f99f1b874551b4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T01:23:59,756 running clean 2021-07-10T01:23:59,757 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:23:59,759 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:23:59,765 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T01:23:59,765 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T01:23:59,765 removing 'build' 2021-07-10T01:23:59,850 Failed to build rnacounter 2021-07-10T01:23:59,851 ERROR: Failed to build one or more wheels 2021-07-10T01:23:59,851 Exception information: 2021-07-10T01:23:59,851 Traceback (most recent call last): 2021-07-10T01:23:59,851 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T01:23:59,851 status = self.run(options, args) 2021-07-10T01:23:59,851 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T01:23:59,851 return func(self, options, args) 2021-07-10T01:23:59,851 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T01:23:59,851 raise CommandError( 2021-07-10T01:23:59,851 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T01:23:59,854 Removed build tracker: '/tmp/pip-req-tracker-vjd_wz43'