2021-07-10T01:29:20,644 Created temporary directory: /tmp/pip-ephem-wheel-cache-dpl1vh7u 2021-07-10T01:29:20,647 Created temporary directory: /tmp/pip-req-tracker-3bhbpl78 2021-07-10T01:29:20,647 Initialized build tracking at /tmp/pip-req-tracker-3bhbpl78 2021-07-10T01:29:20,647 Created build tracker: /tmp/pip-req-tracker-3bhbpl78 2021-07-10T01:29:20,648 Entered build tracker: /tmp/pip-req-tracker-3bhbpl78 2021-07-10T01:29:20,648 Created temporary directory: /tmp/pip-wheel-jtuyanvj 2021-07-10T01:29:20,682 1 location(s) to search for versions of biom-format: 2021-07-10T01:29:20,682 * https://pypi.org/simple/biom-format/ 2021-07-10T01:29:20,683 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-10T01:29:20,683 Getting page https://pypi.org/simple/biom-format/ 2021-07-10T01:29:20,685 Found index url https://pypi.org/simple 2021-07-10T01:29:20,869 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-10T01:29:20,869 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-10T01:29:20,869 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-10T01:29:20,870 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-10T01:29:20,870 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-10T01:29:20,870 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-10T01:29:20,871 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-10T01:29:20,871 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-10T01:29:20,871 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-10T01:29:20,872 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-10T01:29:20,872 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-10T01:29:20,872 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-10T01:29:20,888 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-10T01:29:20,888 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-10T01:29:20,889 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-10T01:29:20,889 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-10T01:29:20,889 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-10T01:29:20,890 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-10T01:29:20,890 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-10T01:29:20,893 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-10T01:29:20,911 Collecting biom-format==2.1.1 2021-07-10T01:29:20,912 Created temporary directory: /tmp/pip-unpack-u42ex8pc 2021-07-10T01:29:21,190 Downloading biom-format-2.1.1.tar.gz (966 kB) 2021-07-10T01:29:22,520 Added biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 to build tracker '/tmp/pip-req-tracker-3bhbpl78' 2021-07-10T01:29:22,521 Running setup.py (path:/tmp/pip-wheel-jtuyanvj/biom-format_d2ba90c8635447148e6e7ae9fc0475c8/setup.py) egg_info for package biom-format 2021-07-10T01:29:22,522 Created temporary directory: /tmp/pip-pip-egg-info-8gj_zfe_ 2021-07-10T01:29:22,522 Running command python setup.py egg_info 2021-07-10T01:29:23,603 running egg_info 2021-07-10T01:29:23,606 creating /tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info 2021-07-10T01:29:23,607 writing /tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info/PKG-INFO 2021-07-10T01:29:23,609 writing dependency_links to /tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info/dependency_links.txt 2021-07-10T01:29:23,611 writing requirements to /tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info/requires.txt 2021-07-10T01:29:23,612 writing top-level names to /tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info/top_level.txt 2021-07-10T01:29:23,614 writing manifest file '/tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info/SOURCES.txt' 2021-07-10T01:29:23,972 reading manifest file '/tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info/SOURCES.txt' 2021-07-10T01:29:23,974 reading manifest template 'MANIFEST.in' 2021-07-10T01:29:24,021 no previously-included directories found matching 'docs/_build' 2021-07-10T01:29:24,023 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T01:29:24,025 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T01:29:24,027 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T01:29:24,027 adding license file 'COPYING.txt' 2021-07-10T01:29:24,049 writing manifest file '/tmp/pip-pip-egg-info-8gj_zfe_/biom_format.egg-info/SOURCES.txt' 2021-07-10T01:29:24,156 Source in /tmp/pip-wheel-jtuyanvj/biom-format_d2ba90c8635447148e6e7ae9fc0475c8 has version 2.1.1, which satisfies requirement biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 2021-07-10T01:29:24,157 Removed biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 from build tracker '/tmp/pip-req-tracker-3bhbpl78' 2021-07-10T01:29:24,161 Created temporary directory: /tmp/pip-unpack-8l4ydauc 2021-07-10T01:29:24,162 Building wheels for collected packages: biom-format 2021-07-10T01:29:24,166 Created temporary directory: /tmp/pip-wheel-mf9ah25u 2021-07-10T01:29:24,167 Building wheel for biom-format (setup.py): started 2021-07-10T01:29:24,167 Destination directory: /tmp/pip-wheel-mf9ah25u 2021-07-10T01:29:24,167 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jtuyanvj/biom-format_d2ba90c8635447148e6e7ae9fc0475c8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jtuyanvj/biom-format_d2ba90c8635447148e6e7ae9fc0475c8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-mf9ah25u 2021-07-10T01:29:25,240 running bdist_wheel 2021-07-10T01:29:25,437 running build 2021-07-10T01:29:25,437 running build_py 2021-07-10T01:29:25,573 creating build 2021-07-10T01:29:25,573 creating build/lib.linux-armv7l-3.9 2021-07-10T01:29:25,574 creating build/lib.linux-armv7l-3.9/biom 2021-07-10T01:29:25,575 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T01:29:25,578 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T01:29:25,579 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T01:29:25,581 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T01:29:25,588 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T01:29:25,591 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T01:29:25,594 creating build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,596 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,599 copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,601 copying biom/commands/table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,604 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,607 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,610 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,613 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,616 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T01:29:25,619 creating build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T01:29:25,620 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T01:29:25,623 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T01:29:25,624 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T01:29:25,626 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T01:29:25,628 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T01:29:25,631 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,632 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,635 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,637 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,639 copying biom/interfaces/optparse/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,641 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,644 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,646 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,649 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T01:29:25,652 creating build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T01:29:25,653 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T01:29:25,655 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T01:29:25,657 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T01:29:25,660 creating build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,661 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,664 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,666 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,667 copying biom/interfaces/html/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,670 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,672 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,674 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T01:29:25,682 running build_ext 2021-07-10T01:29:25,689 building 'biom._filter' extension 2021-07-10T01:29:25,690 creating build/temp.linux-armv7l-3.9 2021-07-10T01:29:25,690 creating build/temp.linux-armv7l-3.9/biom 2021-07-10T01:29:25,691 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-10T01:29:26,081 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T01:29:26,081 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T01:29:26,081 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:29:26,082 from biom/_filter.c:346: 2021-07-10T01:29:26,082 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T01:29:26,082 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T01:29:26,082 | ^~~~~~~ 2021-07-10T01:29:26,277 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T01:29:26,282 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,282 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,282 | ^ 2021-07-10T01:29:26,283 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,283 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,283 from biom/_filter.c:16: 2021-07-10T01:29:26,283 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,284 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,289 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,289 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,289 | ^ 2021-07-10T01:29:26,290 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,290 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,290 from biom/_filter.c:16: 2021-07-10T01:29:26,290 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:26,290 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:26,290 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,296 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,296 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,296 | ^ 2021-07-10T01:29:26,296 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,296 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,296 from biom/_filter.c:16: 2021-07-10T01:29:26,296 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,297 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,297 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,302 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,303 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,303 | ^ 2021-07-10T01:29:26,303 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,303 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,303 from biom/_filter.c:16: 2021-07-10T01:29:26,303 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,304 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,304 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,309 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,309 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,309 | ^ 2021-07-10T01:29:26,310 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,310 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,310 from biom/_filter.c:16: 2021-07-10T01:29:26,310 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:26,310 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:26,310 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,315 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,316 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,316 | ^ 2021-07-10T01:29:26,316 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,316 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,316 from biom/_filter.c:16: 2021-07-10T01:29:26,316 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,316 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,317 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,323 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,323 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,324 | ^ 2021-07-10T01:29:26,324 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,324 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,324 from biom/_filter.c:16: 2021-07-10T01:29:26,324 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,324 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,324 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,330 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,330 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,330 | ^ 2021-07-10T01:29:26,330 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,330 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,331 from biom/_filter.c:16: 2021-07-10T01:29:26,331 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:26,331 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:26,331 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,336 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,336 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,337 | ^ 2021-07-10T01:29:26,337 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,337 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,337 from biom/_filter.c:16: 2021-07-10T01:29:26,337 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,337 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,337 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,342 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,343 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,343 | ^ 2021-07-10T01:29:26,343 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,343 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,343 from biom/_filter.c:16: 2021-07-10T01:29:26,343 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,343 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,343 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,348 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,348 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,348 | ^ 2021-07-10T01:29:26,349 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,349 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,349 from biom/_filter.c:16: 2021-07-10T01:29:26,349 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:26,349 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:26,349 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,354 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:26,354 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:26,354 | ^ 2021-07-10T01:29:26,354 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:26,355 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:26,355 from biom/_filter.c:16: 2021-07-10T01:29:26,355 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:26,355 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:26,355 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:26,489 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T01:29:26,489 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:29:26,489 from biom/_filter.c:346: 2021-07-10T01:29:26,489 At top level: 2021-07-10T01:29:26,490 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T01:29:26,490 1464 | _import_array(void) 2021-07-10T01:29:26,490 | ^~~~~~~~~~~~~ 2021-07-10T01:29:31,706 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-10T01:29:31,839 building 'biom._transform' extension 2021-07-10T01:29:31,839 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-10T01:29:32,218 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T01:29:32,219 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T01:29:32,219 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:29:32,219 from biom/_transform.c:346: 2021-07-10T01:29:32,219 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T01:29:32,219 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T01:29:32,219 | ^~~~~~~ 2021-07-10T01:29:32,301 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T01:29:32,304 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,304 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,304 | ^ 2021-07-10T01:29:32,305 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,305 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,305 from biom/_transform.c:16: 2021-07-10T01:29:32,305 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,306 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,306 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,309 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,309 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,309 | ^ 2021-07-10T01:29:32,309 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,309 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,310 from biom/_transform.c:16: 2021-07-10T01:29:32,310 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:32,310 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:32,310 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,313 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,313 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,313 | ^ 2021-07-10T01:29:32,313 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,314 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,314 from biom/_transform.c:16: 2021-07-10T01:29:32,314 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,314 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,314 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,317 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,317 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,317 | ^ 2021-07-10T01:29:32,318 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,318 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,318 from biom/_transform.c:16: 2021-07-10T01:29:32,318 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,318 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,318 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,321 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,321 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,322 | ^ 2021-07-10T01:29:32,322 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,322 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,322 from biom/_transform.c:16: 2021-07-10T01:29:32,322 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:32,322 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:32,322 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,325 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,325 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,326 | ^ 2021-07-10T01:29:32,326 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,326 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,326 from biom/_transform.c:16: 2021-07-10T01:29:32,326 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,326 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,326 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,330 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,331 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,331 | ^ 2021-07-10T01:29:32,331 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,331 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,331 from biom/_transform.c:16: 2021-07-10T01:29:32,331 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,331 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,331 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,336 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,336 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,336 | ^ 2021-07-10T01:29:32,336 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,336 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,337 from biom/_transform.c:16: 2021-07-10T01:29:32,337 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:32,337 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:32,337 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,341 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,341 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,342 | ^ 2021-07-10T01:29:32,342 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,342 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,342 from biom/_transform.c:16: 2021-07-10T01:29:32,342 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,342 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,343 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,345 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,345 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,346 | ^ 2021-07-10T01:29:32,346 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,346 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,346 from biom/_transform.c:16: 2021-07-10T01:29:32,346 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,346 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,349 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,349 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,349 | ^ 2021-07-10T01:29:32,350 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,350 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,350 from biom/_transform.c:16: 2021-07-10T01:29:32,350 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:32,350 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:32,350 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,353 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:32,353 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:32,353 | ^ 2021-07-10T01:29:32,353 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:32,354 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:32,354 from biom/_transform.c:16: 2021-07-10T01:29:32,354 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:32,354 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:32,354 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:32,492 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T01:29:32,493 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:29:32,493 from biom/_transform.c:346: 2021-07-10T01:29:32,493 At top level: 2021-07-10T01:29:32,493 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T01:29:32,494 1464 | _import_array(void) 2021-07-10T01:29:32,494 | ^~~~~~~~~~~~~ 2021-07-10T01:29:34,174 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-10T01:29:34,293 building 'biom._subsample' extension 2021-07-10T01:29:34,293 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-10T01:29:34,670 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T01:29:34,670 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T01:29:34,670 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:29:34,670 from biom/_subsample.c:346: 2021-07-10T01:29:34,671 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T01:29:34,671 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T01:29:34,671 | ^~~~~~~ 2021-07-10T01:29:34,761 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T01:29:34,762 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,763 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,763 | ^ 2021-07-10T01:29:34,763 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,763 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,763 from biom/_subsample.c:16: 2021-07-10T01:29:34,763 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,764 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,764 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,765 biom/_subsample.c:4440:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,766 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,766 | ^ 2021-07-10T01:29:34,766 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,766 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,766 from biom/_subsample.c:16: 2021-07-10T01:29:34,766 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:34,766 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:34,766 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,768 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,768 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,768 | ^ 2021-07-10T01:29:34,769 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,769 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,769 from biom/_subsample.c:16: 2021-07-10T01:29:34,769 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,769 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,769 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,771 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,771 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,771 | ^ 2021-07-10T01:29:34,771 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,771 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,771 from biom/_subsample.c:16: 2021-07-10T01:29:34,771 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,771 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,773 biom/_subsample.c:4440:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,773 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,773 | ^ 2021-07-10T01:29:34,773 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,774 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,774 from biom/_subsample.c:16: 2021-07-10T01:29:34,774 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:34,774 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:34,774 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,775 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,776 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,776 | ^ 2021-07-10T01:29:34,776 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,776 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,776 from biom/_subsample.c:16: 2021-07-10T01:29:34,776 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,776 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,776 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,779 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,779 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,779 | ^ 2021-07-10T01:29:34,779 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,779 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,780 from biom/_subsample.c:16: 2021-07-10T01:29:34,780 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,780 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,780 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,781 biom/_subsample.c:4456:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,781 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,782 | ^ 2021-07-10T01:29:34,782 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,782 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,782 from biom/_subsample.c:16: 2021-07-10T01:29:34,782 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:34,782 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:34,782 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,784 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,784 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,784 | ^ 2021-07-10T01:29:34,784 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,784 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,784 from biom/_subsample.c:16: 2021-07-10T01:29:34,784 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,785 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,785 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,786 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,786 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,786 | ^ 2021-07-10T01:29:34,787 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,787 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,787 from biom/_subsample.c:16: 2021-07-10T01:29:34,787 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,787 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,787 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,789 biom/_subsample.c:4456:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,789 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,789 | ^ 2021-07-10T01:29:34,789 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,789 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,789 from biom/_subsample.c:16: 2021-07-10T01:29:34,789 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T01:29:34,790 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T01:29:34,790 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,791 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T01:29:34,791 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T01:29:34,791 | ^ 2021-07-10T01:29:34,792 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T01:29:34,792 from /usr/include/python3.9/Python.h:97, 2021-07-10T01:29:34,792 from biom/_subsample.c:16: 2021-07-10T01:29:34,792 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T01:29:34,792 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T01:29:34,792 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T01:29:34,918 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T01:29:34,919 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T01:29:34,919 from biom/_subsample.c:346: 2021-07-10T01:29:34,919 At top level: 2021-07-10T01:29:34,919 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T01:29:34,919 1464 | _import_array(void) 2021-07-10T01:29:34,919 | ^~~~~~~~~~~~~ 2021-07-10T01:29:38,284 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-10T01:29:38,404 running build_scripts 2021-07-10T01:29:38,405 creating build/scripts-3.9 2021-07-10T01:29:38,406 Traceback (most recent call last): 2021-07-10T01:29:38,407 File "/usr/lib/python3.9/tokenize.py", line 330, in find_cookie 2021-07-10T01:29:38,407 line_string = line.decode('utf-8') 2021-07-10T01:29:38,407 UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte 2021-07-10T01:29:38,408 During handling of the above exception, another exception occurred: 2021-07-10T01:29:38,408 Traceback (most recent call last): 2021-07-10T01:29:38,408 File "", line 1, in 2021-07-10T01:29:38,409 File "/tmp/pip-wheel-jtuyanvj/biom-format_d2ba90c8635447148e6e7ae9fc0475c8/setup.py", line 82, in 2021-07-10T01:29:38,409 setup(name='biom-format', 2021-07-10T01:29:38,409 File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 153, in setup 2021-07-10T01:29:38,409 return distutils.core.setup(**attrs) 2021-07-10T01:29:38,409 File "/usr/lib/python3.9/distutils/core.py", line 148, in setup 2021-07-10T01:29:38,409 dist.run_commands() 2021-07-10T01:29:38,410 File "/usr/lib/python3.9/distutils/dist.py", line 966, in run_commands 2021-07-10T01:29:38,410 self.run_command(cmd) 2021-07-10T01:29:38,410 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-10T01:29:38,411 cmd_obj.run() 2021-07-10T01:29:38,412 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 223, in run 2021-07-10T01:29:38,412 self.run_command('build') 2021-07-10T01:29:38,412 File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command 2021-07-10T01:29:38,412 self.distribution.run_command(command) 2021-07-10T01:29:38,413 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-10T01:29:38,414 cmd_obj.run() 2021-07-10T01:29:38,414 File "/usr/lib/python3.9/distutils/command/build.py", line 135, in run 2021-07-10T01:29:38,414 self.run_command(cmd_name) 2021-07-10T01:29:38,414 File "/usr/lib/python3.9/distutils/cmd.py", line 313, in run_command 2021-07-10T01:29:38,415 self.distribution.run_command(command) 2021-07-10T01:29:38,415 File "/usr/lib/python3.9/distutils/dist.py", line 985, in run_command 2021-07-10T01:29:38,416 cmd_obj.run() 2021-07-10T01:29:38,416 File "/usr/lib/python3.9/distutils/command/build_scripts.py", line 50, in run 2021-07-10T01:29:38,416 self.copy_scripts() 2021-07-10T01:29:38,416 File "/usr/lib/python3.9/distutils/command/build_scripts.py", line 82, in copy_scripts 2021-07-10T01:29:38,417 encoding, lines = tokenize.detect_encoding(f.readline) 2021-07-10T01:29:38,417 File "/usr/lib/python3.9/tokenize.py", line 371, in detect_encoding 2021-07-10T01:29:38,418 encoding = find_cookie(first) 2021-07-10T01:29:38,418 File "/usr/lib/python3.9/tokenize.py", line 335, in find_cookie 2021-07-10T01:29:38,418 raise SyntaxError(msg) 2021-07-10T01:29:38,418 SyntaxError: invalid or missing encoding declaration for 'scripts/foo' 2021-07-10T01:29:38,539 Building wheel for biom-format (setup.py): finished with status 'error' 2021-07-10T01:29:38,539 ERROR: Failed building wheel for biom-format 2021-07-10T01:29:38,540 Running setup.py clean for biom-format 2021-07-10T01:29:38,540 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jtuyanvj/biom-format_d2ba90c8635447148e6e7ae9fc0475c8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jtuyanvj/biom-format_d2ba90c8635447148e6e7ae9fc0475c8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T01:29:39,606 running clean 2021-07-10T01:29:39,609 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:29:39,613 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T01:29:39,633 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T01:29:39,633 removing 'build/scripts-3.9' (and everything under it) 2021-07-10T01:29:39,635 removing 'build' 2021-07-10T01:29:39,724 Failed to build biom-format 2021-07-10T01:29:39,725 ERROR: Failed to build one or more wheels 2021-07-10T01:29:39,725 Exception information: 2021-07-10T01:29:39,725 Traceback (most recent call last): 2021-07-10T01:29:39,725 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T01:29:39,725 status = self.run(options, args) 2021-07-10T01:29:39,725 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T01:29:39,725 return func(self, options, args) 2021-07-10T01:29:39,725 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T01:29:39,725 raise CommandError( 2021-07-10T01:29:39,725 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T01:29:39,728 Removed build tracker: '/tmp/pip-req-tracker-3bhbpl78'