2021-07-10T02:05:50,199 Created temporary directory: /tmp/pip-ephem-wheel-cache-wz4ys5jo 2021-07-10T02:05:50,202 Created temporary directory: /tmp/pip-req-tracker-ddqziakf 2021-07-10T02:05:50,202 Initialized build tracking at /tmp/pip-req-tracker-ddqziakf 2021-07-10T02:05:50,202 Created build tracker: /tmp/pip-req-tracker-ddqziakf 2021-07-10T02:05:50,203 Entered build tracker: /tmp/pip-req-tracker-ddqziakf 2021-07-10T02:05:50,203 Created temporary directory: /tmp/pip-wheel-6_uzdp7n 2021-07-10T02:05:50,236 1 location(s) to search for versions of biom-format: 2021-07-10T02:05:50,236 * https://pypi.org/simple/biom-format/ 2021-07-10T02:05:50,237 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-10T02:05:50,237 Getting page https://pypi.org/simple/biom-format/ 2021-07-10T02:05:50,239 Found index url https://pypi.org/simple 2021-07-10T02:05:50,420 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-10T02:05:50,420 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-10T02:05:50,421 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-10T02:05:50,421 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-10T02:05:50,421 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-10T02:05:50,422 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-10T02:05:50,422 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-10T02:05:50,422 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-10T02:05:50,423 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-10T02:05:50,423 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-10T02:05:50,423 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-10T02:05:50,424 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-10T02:05:50,441 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-10T02:05:50,441 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-10T02:05:50,442 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-10T02:05:50,442 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-10T02:05:50,442 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-10T02:05:50,443 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-10T02:05:50,443 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-10T02:05:50,446 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-10T02:05:50,465 Collecting biom-format==2.1.2 2021-07-10T02:05:50,467 Created temporary directory: /tmp/pip-unpack-jejuydp_ 2021-07-10T02:05:51,198 Downloading biom-format-2.1.2.tar.gz (1.0 MB) 2021-07-10T02:05:52,557 Added biom-format==2.1.2 from https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 to build tracker '/tmp/pip-req-tracker-ddqziakf' 2021-07-10T02:05:52,558 Running setup.py (path:/tmp/pip-wheel-6_uzdp7n/biom-format_1505eb913a6c4e1eae15d1f56d0ccdcb/setup.py) egg_info for package biom-format 2021-07-10T02:05:52,558 Created temporary directory: /tmp/pip-pip-egg-info-v7fmoinf 2021-07-10T02:05:52,559 Running command python setup.py egg_info 2021-07-10T02:05:53,645 running egg_info 2021-07-10T02:05:53,649 creating /tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info 2021-07-10T02:05:53,650 writing /tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info/PKG-INFO 2021-07-10T02:05:53,652 writing dependency_links to /tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info/dependency_links.txt 2021-07-10T02:05:53,655 writing requirements to /tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info/requires.txt 2021-07-10T02:05:53,656 writing top-level names to /tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info/top_level.txt 2021-07-10T02:05:53,658 writing manifest file '/tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info/SOURCES.txt' 2021-07-10T02:05:54,017 reading manifest file '/tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info/SOURCES.txt' 2021-07-10T02:05:54,019 reading manifest template 'MANIFEST.in' 2021-07-10T02:05:54,067 no previously-included directories found matching 'docs/_build' 2021-07-10T02:05:54,069 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T02:05:54,071 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T02:05:54,073 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T02:05:54,073 adding license file 'COPYING.txt' 2021-07-10T02:05:54,098 writing manifest file '/tmp/pip-pip-egg-info-v7fmoinf/biom_format.egg-info/SOURCES.txt' 2021-07-10T02:05:54,201 Source in /tmp/pip-wheel-6_uzdp7n/biom-format_1505eb913a6c4e1eae15d1f56d0ccdcb has version 2.1.2, which satisfies requirement biom-format==2.1.2 from https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 2021-07-10T02:05:54,202 Removed biom-format==2.1.2 from https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 from build tracker '/tmp/pip-req-tracker-ddqziakf' 2021-07-10T02:05:54,206 Created temporary directory: /tmp/pip-unpack-d505ukix 2021-07-10T02:05:54,206 Building wheels for collected packages: biom-format 2021-07-10T02:05:54,210 Created temporary directory: /tmp/pip-wheel-1r2khw9u 2021-07-10T02:05:54,210 Building wheel for biom-format (setup.py): started 2021-07-10T02:05:54,211 Destination directory: /tmp/pip-wheel-1r2khw9u 2021-07-10T02:05:54,211 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6_uzdp7n/biom-format_1505eb913a6c4e1eae15d1f56d0ccdcb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6_uzdp7n/biom-format_1505eb913a6c4e1eae15d1f56d0ccdcb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1r2khw9u 2021-07-10T02:05:55,528 running bdist_wheel 2021-07-10T02:05:55,725 running build 2021-07-10T02:05:55,725 running build_py 2021-07-10T02:05:55,857 creating build 2021-07-10T02:05:55,858 creating build/lib.linux-armv7l-3.9 2021-07-10T02:05:55,858 creating build/lib.linux-armv7l-3.9/biom 2021-07-10T02:05:55,860 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:05:55,871 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:05:55,872 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:05:55,875 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:05:55,877 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:05:55,883 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:05:55,888 creating build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,889 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,892 copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,894 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,897 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,900 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,903 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,906 copying biom/commands/table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,908 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:05:55,911 creating build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T02:05:55,912 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T02:05:55,915 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:05:55,915 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:05:55,917 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:05:55,919 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:05:55,922 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,923 copying biom/interfaces/optparse/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,925 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,927 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,929 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,931 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,933 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,935 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,937 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:05:55,940 creating build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:05:55,941 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:05:55,943 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:05:55,944 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:05:55,947 creating build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,948 copying biom/interfaces/html/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,950 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,952 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,953 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,955 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,957 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,959 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:05:55,966 running build_ext 2021-07-10T02:05:55,972 building 'biom._filter' extension 2021-07-10T02:05:55,973 creating build/temp.linux-armv7l-3.9 2021-07-10T02:05:55,973 creating build/temp.linux-armv7l-3.9/biom 2021-07-10T02:05:55,974 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-10T02:05:56,342 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T02:05:56,342 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T02:05:56,343 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:05:56,343 from biom/_filter.c:346: 2021-07-10T02:05:56,343 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T02:05:56,343 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T02:05:56,343 | ^~~~~~~ 2021-07-10T02:05:56,522 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T02:05:56,525 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,525 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,526 | ^ 2021-07-10T02:05:56,526 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,526 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,526 from biom/_filter.c:16: 2021-07-10T02:05:56,526 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,526 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,527 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,530 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,530 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,530 | ^ 2021-07-10T02:05:56,530 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,530 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,531 from biom/_filter.c:16: 2021-07-10T02:05:56,531 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:05:56,531 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:05:56,531 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,534 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,534 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,534 | ^ 2021-07-10T02:05:56,534 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,534 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,534 from biom/_filter.c:16: 2021-07-10T02:05:56,535 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,535 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,535 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,538 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,538 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,538 | ^ 2021-07-10T02:05:56,538 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,538 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,538 from biom/_filter.c:16: 2021-07-10T02:05:56,538 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,539 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,539 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,542 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,542 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,542 | ^ 2021-07-10T02:05:56,542 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,542 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,542 from biom/_filter.c:16: 2021-07-10T02:05:56,542 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:05:56,542 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:05:56,543 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,545 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,546 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,546 | ^ 2021-07-10T02:05:56,546 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,546 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,546 from biom/_filter.c:16: 2021-07-10T02:05:56,546 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,546 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,547 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,551 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,551 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,551 | ^ 2021-07-10T02:05:56,551 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,551 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,551 from biom/_filter.c:16: 2021-07-10T02:05:56,551 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,552 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,552 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,554 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,555 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,555 | ^ 2021-07-10T02:05:56,555 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,555 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,555 from biom/_filter.c:16: 2021-07-10T02:05:56,555 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:05:56,555 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:05:56,555 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,558 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,558 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,559 | ^ 2021-07-10T02:05:56,559 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,559 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,559 from biom/_filter.c:16: 2021-07-10T02:05:56,559 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,559 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,559 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,562 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,562 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,563 | ^ 2021-07-10T02:05:56,563 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,563 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,563 from biom/_filter.c:16: 2021-07-10T02:05:56,563 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,563 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,563 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,566 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,566 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,566 | ^ 2021-07-10T02:05:56,567 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,567 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,567 from biom/_filter.c:16: 2021-07-10T02:05:56,567 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:05:56,567 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:05:56,567 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,570 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:05:56,570 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:05:56,570 | ^ 2021-07-10T02:05:56,571 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:05:56,571 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:05:56,571 from biom/_filter.c:16: 2021-07-10T02:05:56,571 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:05:56,571 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:05:56,571 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:05:56,686 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T02:05:56,687 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:05:56,687 from biom/_filter.c:346: 2021-07-10T02:05:56,687 At top level: 2021-07-10T02:05:56,687 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T02:05:56,687 1464 | _import_array(void) 2021-07-10T02:05:56,687 | ^~~~~~~~~~~~~ 2021-07-10T02:06:01,949 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-10T02:06:02,074 building 'biom._transform' extension 2021-07-10T02:06:02,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-10T02:06:02,450 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T02:06:02,450 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T02:06:02,451 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:06:02,451 from biom/_transform.c:346: 2021-07-10T02:06:02,451 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T02:06:02,451 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T02:06:02,451 | ^~~~~~~ 2021-07-10T02:06:02,530 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T02:06:02,532 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,532 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,532 | ^ 2021-07-10T02:06:02,532 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,533 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,533 from biom/_transform.c:16: 2021-07-10T02:06:02,533 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,533 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,533 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,534 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,535 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,535 | ^ 2021-07-10T02:06:02,535 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,535 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,535 from biom/_transform.c:16: 2021-07-10T02:06:02,535 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:02,535 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:02,535 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,537 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,537 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,537 | ^ 2021-07-10T02:06:02,537 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,537 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,537 from biom/_transform.c:16: 2021-07-10T02:06:02,537 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,538 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,538 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,539 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,539 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,539 | ^ 2021-07-10T02:06:02,539 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,539 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,540 from biom/_transform.c:16: 2021-07-10T02:06:02,540 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,540 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,540 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,541 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,541 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,541 | ^ 2021-07-10T02:06:02,542 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,542 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,542 from biom/_transform.c:16: 2021-07-10T02:06:02,542 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:02,542 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:02,542 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,543 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,543 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,544 | ^ 2021-07-10T02:06:02,544 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,544 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,544 from biom/_transform.c:16: 2021-07-10T02:06:02,544 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,544 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,544 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,546 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,546 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,547 | ^ 2021-07-10T02:06:02,547 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,547 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,547 from biom/_transform.c:16: 2021-07-10T02:06:02,547 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,547 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,547 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,548 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,549 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,549 | ^ 2021-07-10T02:06:02,549 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,549 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,549 from biom/_transform.c:16: 2021-07-10T02:06:02,549 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:02,549 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:02,549 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,551 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,551 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,551 | ^ 2021-07-10T02:06:02,551 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,551 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,551 from biom/_transform.c:16: 2021-07-10T02:06:02,551 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,552 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,552 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,553 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,553 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,553 | ^ 2021-07-10T02:06:02,553 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,553 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,554 from biom/_transform.c:16: 2021-07-10T02:06:02,554 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,554 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,554 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,555 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,555 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,555 | ^ 2021-07-10T02:06:02,555 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,556 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,556 from biom/_transform.c:16: 2021-07-10T02:06:02,556 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:02,556 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:02,556 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,557 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:02,557 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:02,558 | ^ 2021-07-10T02:06:02,558 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:02,558 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:02,558 from biom/_transform.c:16: 2021-07-10T02:06:02,558 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:02,558 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:02,558 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:02,672 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T02:06:02,672 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:06:02,672 from biom/_transform.c:346: 2021-07-10T02:06:02,673 At top level: 2021-07-10T02:06:02,673 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T02:06:02,673 1464 | _import_array(void) 2021-07-10T02:06:02,673 | ^~~~~~~~~~~~~ 2021-07-10T02:06:04,348 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-10T02:06:04,468 building 'biom._subsample' extension 2021-07-10T02:06:04,468 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-10T02:06:04,858 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T02:06:04,859 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T02:06:04,859 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:06:04,859 from biom/_subsample.c:346: 2021-07-10T02:06:04,859 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T02:06:04,859 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T02:06:04,859 | ^~~~~~~ 2021-07-10T02:06:04,955 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T02:06:04,958 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,958 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,958 | ^ 2021-07-10T02:06:04,958 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,959 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,959 from biom/_subsample.c:16: 2021-07-10T02:06:04,959 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,959 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,959 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,962 biom/_subsample.c:4440:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,962 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,962 | ^ 2021-07-10T02:06:04,962 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,962 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,962 from biom/_subsample.c:16: 2021-07-10T02:06:04,962 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:04,963 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:04,963 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,965 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,965 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,965 | ^ 2021-07-10T02:06:04,965 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,966 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,966 from biom/_subsample.c:16: 2021-07-10T02:06:04,966 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,966 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,966 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,968 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,968 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,969 | ^ 2021-07-10T02:06:04,969 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,969 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,969 from biom/_subsample.c:16: 2021-07-10T02:06:04,969 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,969 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,969 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,972 biom/_subsample.c:4440:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,972 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,972 | ^ 2021-07-10T02:06:04,972 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,972 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,972 from biom/_subsample.c:16: 2021-07-10T02:06:04,972 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:04,972 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:04,972 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,975 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,975 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,975 | ^ 2021-07-10T02:06:04,975 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,975 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,975 from biom/_subsample.c:16: 2021-07-10T02:06:04,976 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,976 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,976 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,979 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,979 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,979 | ^ 2021-07-10T02:06:04,979 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,980 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,980 from biom/_subsample.c:16: 2021-07-10T02:06:04,980 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,980 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,980 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,982 biom/_subsample.c:4456:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,982 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,983 | ^ 2021-07-10T02:06:04,983 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,983 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,983 from biom/_subsample.c:16: 2021-07-10T02:06:04,983 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:04,983 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:04,983 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,985 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,986 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,986 | ^ 2021-07-10T02:06:04,986 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,986 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,986 from biom/_subsample.c:16: 2021-07-10T02:06:04,986 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,986 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,986 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,989 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,989 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,989 | ^ 2021-07-10T02:06:04,989 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,989 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,989 from biom/_subsample.c:16: 2021-07-10T02:06:04,990 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,990 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,990 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,992 biom/_subsample.c:4456:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,992 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,992 | ^ 2021-07-10T02:06:04,992 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,992 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,993 from biom/_subsample.c:16: 2021-07-10T02:06:04,993 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:06:04,993 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:06:04,993 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:04,995 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:06:04,995 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:06:04,996 | ^ 2021-07-10T02:06:04,996 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:06:04,996 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:06:04,996 from biom/_subsample.c:16: 2021-07-10T02:06:04,996 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:06:04,996 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:06:04,996 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:06:05,142 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T02:06:05,143 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:06:05,143 from biom/_subsample.c:346: 2021-07-10T02:06:05,143 At top level: 2021-07-10T02:06:05,143 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T02:06:05,144 1464 | _import_array(void) 2021-07-10T02:06:05,144 | ^~~~~~~~~~~~~ 2021-07-10T02:06:08,491 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-10T02:06:08,615 running build_scripts 2021-07-10T02:06:08,616 creating build/scripts-3.9 2021-07-10T02:06:08,618 copying scripts/biom -> build/scripts-3.9 2021-07-10T02:06:08,620 copying scripts/serve-biom -> build/scripts-3.9 2021-07-10T02:06:08,621 changing mode of build/scripts-3.9/serve-biom from 644 to 755 2021-07-10T02:06:08,628 installing to build/bdist.linux-armv7l/wheel 2021-07-10T02:06:08,628 running install 2021-07-10T02:06:08,630 running install_lib 2021-07-10T02:06:08,633 creating build/bdist.linux-armv7l 2021-07-10T02:06:08,634 creating build/bdist.linux-armv7l/wheel 2021-07-10T02:06:08,636 creating build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,637 copying build/lib.linux-armv7l-3.9/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,640 creating build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,641 copying build/lib.linux-armv7l-3.9/biom/commands/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,644 copying build/lib.linux-armv7l-3.9/biom/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,646 copying build/lib.linux-armv7l-3.9/biom/commands/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,648 copying build/lib.linux-armv7l-3.9/biom/commands/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,650 copying build/lib.linux-armv7l-3.9/biom/commands/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,653 copying build/lib.linux-armv7l-3.9/biom/commands/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,655 copying build/lib.linux-armv7l-3.9/biom/commands/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,657 copying build/lib.linux-armv7l-3.9/biom/commands/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:06:08,660 copying build/lib.linux-armv7l-3.9/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,663 creating build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-10T02:06:08,664 copying build/lib.linux-armv7l-3.9/biom/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-10T02:06:08,666 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:06:08,666 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:06:08,668 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:06:08,670 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:06:08,673 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,674 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,676 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,678 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,679 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,681 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,683 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,685 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/subset_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,686 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:06:08,689 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:06:08,690 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:06:08,692 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:06:08,693 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:06:08,696 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,697 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,699 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,701 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,702 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,704 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,706 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,708 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:06:08,710 copying build/lib.linux-armv7l-3.9/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,712 copying build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,723 copying build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,731 copying build/lib.linux-armv7l-3.9/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,734 copying build/lib.linux-armv7l-3.9/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,741 copying build/lib.linux-armv7l-3.9/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,744 copying build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:06:08,750 running install_egg_info 2021-07-10T02:06:08,774 running egg_info 2021-07-10T02:06:08,775 writing biom_format.egg-info/PKG-INFO 2021-07-10T02:06:08,777 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-10T02:06:08,780 writing requirements to biom_format.egg-info/requires.txt 2021-07-10T02:06:08,781 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-10T02:06:08,796 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T02:06:08,887 reading manifest template 'MANIFEST.in' 2021-07-10T02:06:08,924 no previously-included directories found matching 'docs/_build' 2021-07-10T02:06:08,928 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T02:06:08,931 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T02:06:08,933 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T02:06:08,934 adding license file 'COPYING.txt' 2021-07-10T02:06:08,964 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T02:06:08,967 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.2-py3.9.egg-info 2021-07-10T02:06:08,980 running install_scripts 2021-07-10T02:06:09,069 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.2.data 2021-07-10T02:06:09,070 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.2.data/scripts 2021-07-10T02:06:09,071 copying build/scripts-3.9/serve-biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.2.data/scripts 2021-07-10T02:06:09,074 copying build/scripts-3.9/biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.2.data/scripts 2021-07-10T02:06:09,076 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.2.data/scripts/serve-biom to 755 2021-07-10T02:06:09,076 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.2.data/scripts/biom to 755 2021-07-10T02:06:09,104 adding license file "COPYING.txt" (matched pattern "COPYING*") 2021-07-10T02:06:09,109 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.2.dist-info/WHEEL 2021-07-10T02:06:09,112 creating '/tmp/pip-wheel-1r2khw9u/biom_format-2.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T02:06:09,116 adding 'biom/__init__.py' 2021-07-10T02:06:09,199 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T02:06:09,248 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T02:06:09,277 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T02:06:09,281 adding 'biom/err.py' 2021-07-10T02:06:09,283 adding 'biom/exception.py' 2021-07-10T02:06:09,286 adding 'biom/parse.py' 2021-07-10T02:06:09,302 adding 'biom/table.py' 2021-07-10T02:06:09,306 adding 'biom/util.py' 2021-07-10T02:06:09,308 adding 'biom/commands/__init__.py' 2021-07-10T02:06:09,310 adding 'biom/commands/installation_informer.py' 2021-07-10T02:06:09,312 adding 'biom/commands/metadata_adder.py' 2021-07-10T02:06:09,314 adding 'biom/commands/table_converter.py' 2021-07-10T02:06:09,316 adding 'biom/commands/table_normalizer.py' 2021-07-10T02:06:09,318 adding 'biom/commands/table_subsetter.py' 2021-07-10T02:06:09,319 adding 'biom/commands/table_summarizer.py' 2021-07-10T02:06:09,322 adding 'biom/commands/table_validator.py' 2021-07-10T02:06:09,324 adding 'biom/interfaces/__init__.py' 2021-07-10T02:06:09,327 adding 'biom/interfaces/html/__init__.py' 2021-07-10T02:06:09,328 adding 'biom/interfaces/html/input_handler.py' 2021-07-10T02:06:09,330 adding 'biom/interfaces/html/output_handler.py' 2021-07-10T02:06:09,332 adding 'biom/interfaces/html/config/__init__.py' 2021-07-10T02:06:09,334 adding 'biom/interfaces/html/config/add_metadata.py' 2021-07-10T02:06:09,335 adding 'biom/interfaces/html/config/convert.py' 2021-07-10T02:06:09,337 adding 'biom/interfaces/html/config/normalize_table.py' 2021-07-10T02:06:09,339 adding 'biom/interfaces/html/config/show_install_info.py' 2021-07-10T02:06:09,341 adding 'biom/interfaces/html/config/summarize_table.py' 2021-07-10T02:06:09,342 adding 'biom/interfaces/html/config/validate_table.py' 2021-07-10T02:06:09,344 adding 'biom/interfaces/optparse/__init__.py' 2021-07-10T02:06:09,346 adding 'biom/interfaces/optparse/input_handler.py' 2021-07-10T02:06:09,348 adding 'biom/interfaces/optparse/output_handler.py' 2021-07-10T02:06:09,350 adding 'biom/interfaces/optparse/config/__init__.py' 2021-07-10T02:06:09,352 adding 'biom/interfaces/optparse/config/add_metadata.py' 2021-07-10T02:06:09,354 adding 'biom/interfaces/optparse/config/convert.py' 2021-07-10T02:06:09,355 adding 'biom/interfaces/optparse/config/normalize_table.py' 2021-07-10T02:06:09,357 adding 'biom/interfaces/optparse/config/show_install_info.py' 2021-07-10T02:06:09,359 adding 'biom/interfaces/optparse/config/subset_table.py' 2021-07-10T02:06:09,361 adding 'biom/interfaces/optparse/config/summarize_table.py' 2021-07-10T02:06:09,362 adding 'biom/interfaces/optparse/config/validate_table.py' 2021-07-10T02:06:09,365 adding 'biom_format-2.1.2.data/scripts/biom' 2021-07-10T02:06:09,367 adding 'biom_format-2.1.2.data/scripts/serve-biom' 2021-07-10T02:06:09,370 adding 'biom_format-2.1.2.dist-info/COPYING.txt' 2021-07-10T02:06:09,371 adding 'biom_format-2.1.2.dist-info/METADATA' 2021-07-10T02:06:09,372 adding 'biom_format-2.1.2.dist-info/WHEEL' 2021-07-10T02:06:09,374 adding 'biom_format-2.1.2.dist-info/top_level.txt' 2021-07-10T02:06:09,375 adding 'biom_format-2.1.2.dist-info/RECORD' 2021-07-10T02:06:09,384 removing build/bdist.linux-armv7l/wheel 2021-07-10T02:06:09,518 Building wheel for biom-format (setup.py): finished with status 'done' 2021-07-10T02:06:09,524 Created wheel for biom-format: filename=biom_format-2.1.2-cp39-cp39-linux_armv7l.whl size=369798 sha256=e8baea6999808dcd1996f305b77b12157f3cae25438816a34826368b7c85c1df 2021-07-10T02:06:09,525 Stored in directory: /tmp/pip-ephem-wheel-cache-wz4ys5jo/wheels/31/4c/f2/f470005f7fd855b1ef8750a346a0c8b2671c552a20eb35e7ee 2021-07-10T02:06:09,535 Successfully built biom-format 2021-07-10T02:06:09,552 Removed build tracker: '/tmp/pip-req-tracker-ddqziakf'