2021-07-10T02:06:37,571 Created temporary directory: /tmp/pip-ephem-wheel-cache-7ltxhh68
2021-07-10T02:06:37,574 Created temporary directory: /tmp/pip-req-tracker-i7s8n8gu
2021-07-10T02:06:37,574 Initialized build tracking at /tmp/pip-req-tracker-i7s8n8gu
2021-07-10T02:06:37,575 Created build tracker: /tmp/pip-req-tracker-i7s8n8gu
2021-07-10T02:06:37,575 Entered build tracker: /tmp/pip-req-tracker-i7s8n8gu
2021-07-10T02:06:37,575 Created temporary directory: /tmp/pip-wheel-52el59xg
2021-07-10T02:06:37,613 1 location(s) to search for versions of vdj:
2021-07-10T02:06:37,613 * https://pypi.org/simple/vdj/
2021-07-10T02:06:37,614 Fetching project page and analyzing links: https://pypi.org/simple/vdj/
2021-07-10T02:06:37,614 Getting page https://pypi.org/simple/vdj/
2021-07-10T02:06:37,616 Found index url https://pypi.org/simple
2021-07-10T02:06:37,804   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/3f/b0/9de2ad4b7c774ae349afb2d2bf301eafd0e0f04b7c13bedff7e99f182a9a/vdj-1.6.0-py2.7-macosx-10.10-x86_64.egg#sha256=761118cca6719bc004d819affd07982775d925db549cca2c47c57d0a4eccda6f (from https://pypi.org/simple/vdj/)
2021-07-10T02:06:37,805   Found link https://files.pythonhosted.org/packages/76/03/c13812526b84e4a67940d38db16ba1c901bcd0494e16b89526296e3b054f/vdj-1.6.0.tar.gz#sha256=9fafdc1d8308ddcf051290506cf214b19d793828189a9c0949958dc6feeecf25 (from https://pypi.org/simple/vdj/), version: 1.6.0
2021-07-10T02:06:37,805 Skipping link: not a file: https://pypi.org/simple/vdj/
2021-07-10T02:06:37,821 Given no hashes to check 1 links for project 'vdj': discarding no candidates
2021-07-10T02:06:37,838 Collecting vdj==1.6.0
2021-07-10T02:06:37,840   Created temporary directory: /tmp/pip-unpack-fj96xzv3
2021-07-10T02:06:38,010   Downloading vdj-1.6.0.tar.gz (2.9 kB)
2021-07-10T02:06:38,043   Added vdj==1.6.0 from https://files.pythonhosted.org/packages/76/03/c13812526b84e4a67940d38db16ba1c901bcd0494e16b89526296e3b054f/vdj-1.6.0.tar.gz#sha256=9fafdc1d8308ddcf051290506cf214b19d793828189a9c0949958dc6feeecf25 to build tracker '/tmp/pip-req-tracker-i7s8n8gu'
2021-07-10T02:06:38,044     Running setup.py (path:/tmp/pip-wheel-52el59xg/vdj_8602e1870cf74c9f939ff521eb52fb5c/setup.py) egg_info for package vdj
2021-07-10T02:06:38,045     Created temporary directory: /tmp/pip-pip-egg-info-n_hmjupi
2021-07-10T02:06:38,045     Running command python setup.py egg_info
2021-07-10T02:06:39,306     running egg_info
2021-07-10T02:06:39,308     creating /tmp/pip-pip-egg-info-n_hmjupi/vdj.egg-info
2021-07-10T02:06:39,309     writing /tmp/pip-pip-egg-info-n_hmjupi/vdj.egg-info/PKG-INFO
2021-07-10T02:06:39,311     writing dependency_links to /tmp/pip-pip-egg-info-n_hmjupi/vdj.egg-info/dependency_links.txt
2021-07-10T02:06:39,313     writing top-level names to /tmp/pip-pip-egg-info-n_hmjupi/vdj.egg-info/top_level.txt
2021-07-10T02:06:39,314     writing manifest file '/tmp/pip-pip-egg-info-n_hmjupi/vdj.egg-info/SOURCES.txt'
2021-07-10T02:06:39,546     reading manifest file '/tmp/pip-pip-egg-info-n_hmjupi/vdj.egg-info/SOURCES.txt'
2021-07-10T02:06:39,550     writing manifest file '/tmp/pip-pip-egg-info-n_hmjupi/vdj.egg-info/SOURCES.txt'
2021-07-10T02:06:39,687   Source in /tmp/pip-wheel-52el59xg/vdj_8602e1870cf74c9f939ff521eb52fb5c has version 1.6.0, which satisfies requirement vdj==1.6.0 from https://files.pythonhosted.org/packages/76/03/c13812526b84e4a67940d38db16ba1c901bcd0494e16b89526296e3b054f/vdj-1.6.0.tar.gz#sha256=9fafdc1d8308ddcf051290506cf214b19d793828189a9c0949958dc6feeecf25
2021-07-10T02:06:39,688   Removed vdj==1.6.0 from https://files.pythonhosted.org/packages/76/03/c13812526b84e4a67940d38db16ba1c901bcd0494e16b89526296e3b054f/vdj-1.6.0.tar.gz#sha256=9fafdc1d8308ddcf051290506cf214b19d793828189a9c0949958dc6feeecf25 from build tracker '/tmp/pip-req-tracker-i7s8n8gu'
2021-07-10T02:06:39,692 Created temporary directory: /tmp/pip-unpack-jmx0w3f9
2021-07-10T02:06:39,692 Building wheels for collected packages: vdj
2021-07-10T02:06:39,696   Created temporary directory: /tmp/pip-wheel-npmjrvf5
2021-07-10T02:06:39,696   Building wheel for vdj (setup.py): started
2021-07-10T02:06:39,696   Destination directory: /tmp/pip-wheel-npmjrvf5
2021-07-10T02:06:39,697   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-52el59xg/vdj_8602e1870cf74c9f939ff521eb52fb5c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-52el59xg/vdj_8602e1870cf74c9f939ff521eb52fb5c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-npmjrvf5
2021-07-10T02:06:40,914   running bdist_wheel
2021-07-10T02:06:41,133   running build
2021-07-10T02:06:41,133   running build_ext
2021-07-10T02:06:41,137   building 'alignmentcore' extension
2021-07-10T02:06:41,146   C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

2021-07-10T02:06:41,146   creating build
2021-07-10T02:06:41,146   creating build/temp.linux-armv7l-3.9
2021-07-10T02:06:41,147   compile options: '-I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c'
2021-07-10T02:06:41,147   arm-linux-gnueabihf-gcc: alignmentcore.c
2021-07-10T02:06:41,521   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T02:06:41,521                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T02:06:41,522                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T02:06:41,522                    from alignmentcore.c:18:
2021-07-10T02:06:41,522   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T02:06:41,522      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T02:06:41,522         |  ^~~~~~~
2021-07-10T02:06:41,557   alignmentcore.c: In function ‘initalignmentcore’:
2021-07-10T02:06:41,557   alignmentcore.c:192:5: warning: implicit declaration of function ‘Py_InitModule’ [-Wimplicit-function-declaration]
2021-07-10T02:06:41,558     192 |     Py_InitModule( "alignmentcore", alignmentcoremethods ) ;
2021-07-10T02:06:41,558         |     ^~~~~~~~~~~~~
2021-07-10T02:06:41,559   alignmentcore.c:193:5: warning: ‘return’ with a value, in function returning void [-Wreturn-type]
2021-07-10T02:06:41,559     193 |     import_array();
2021-07-10T02:06:41,560         |     ^~~~~~~~~~~~
2021-07-10T02:06:41,561   alignmentcore.c:191:6: note: declared here
2021-07-10T02:06:41,561     191 | void initalignmentcore() {
2021-07-10T02:06:41,562         |      ^~~~~~~~~~~~~~~~~
2021-07-10T02:06:41,831   creating build/lib.linux-armv7l-3.9
2021-07-10T02:06:41,831   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/alignmentcore.o -o build/lib.linux-armv7l-3.9/alignmentcore.cpython-39-arm-linux-gnueabihf.so
2021-07-10T02:06:41,941   building 'clusteringcore' extension
2021-07-10T02:06:41,942   C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

2021-07-10T02:06:41,942   compile options: '-I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c'
2021-07-10T02:06:41,943   arm-linux-gnueabihf-gcc: clusteringcore.c
2021-07-10T02:06:42,314   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T02:06:42,315                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T02:06:42,315                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T02:06:42,315                    from clusteringcore.c:21:
2021-07-10T02:06:42,315   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T02:06:42,315      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T02:06:42,315         |  ^~~~~~~
2021-07-10T02:06:42,350   clusteringcore.c: In function ‘initclusteringcore’:
2021-07-10T02:06:42,350   clusteringcore.c:93:5: warning: implicit declaration of function ‘Py_InitModule’ [-Wimplicit-function-declaration]
2021-07-10T02:06:42,351      93 |     Py_InitModule( "clusteringcore", clusteringcoremethods ) ;
2021-07-10T02:06:42,352         |     ^~~~~~~~~~~~~
2021-07-10T02:06:42,355   clusteringcore.c:95:1: warning: control reaches end of non-void function [-Wreturn-type]
2021-07-10T02:06:42,355      95 | }
2021-07-10T02:06:42,355         | ^
2021-07-10T02:06:42,543   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/clusteringcore.o -o build/lib.linux-armv7l-3.9/clusteringcore.cpython-39-arm-linux-gnueabihf.so
2021-07-10T02:06:42,656   installing to build/bdist.linux-armv7l/wheel
2021-07-10T02:06:42,657   running install
2021-07-10T02:06:42,658   running install_lib
2021-07-10T02:06:42,662   creating build/bdist.linux-armv7l
2021-07-10T02:06:42,662   creating build/bdist.linux-armv7l/wheel
2021-07-10T02:06:42,664   copying build/lib.linux-armv7l-3.9/alignmentcore.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-10T02:06:42,668   copying build/lib.linux-armv7l-3.9/clusteringcore.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-10T02:06:42,671   running install_egg_info
2021-07-10T02:06:42,676   running egg_info
2021-07-10T02:06:42,677   writing vdj.egg-info/PKG-INFO
2021-07-10T02:06:42,680   writing dependency_links to vdj.egg-info/dependency_links.txt
2021-07-10T02:06:42,682   writing top-level names to vdj.egg-info/top_level.txt
2021-07-10T02:06:42,687   reading manifest file 'vdj.egg-info/SOURCES.txt'
2021-07-10T02:06:42,691   writing manifest file 'vdj.egg-info/SOURCES.txt'
2021-07-10T02:06:42,693   Copying vdj.egg-info to build/bdist.linux-armv7l/wheel/vdj-1.6.0-py3.9.egg-info
2021-07-10T02:06:42,703   running install_scripts
2021-07-10T02:06:42,949   creating build/bdist.linux-armv7l/wheel/vdj-1.6.0.dist-info/WHEEL
2021-07-10T02:06:42,954   creating '/tmp/pip-wheel-npmjrvf5/vdj-1.6.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T02:06:42,963   adding 'alignmentcore.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T02:06:42,970   adding 'clusteringcore.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T02:06:42,973   adding 'vdj-1.6.0.dist-info/METADATA'
2021-07-10T02:06:42,974   adding 'vdj-1.6.0.dist-info/WHEEL'
2021-07-10T02:06:42,975   adding 'vdj-1.6.0.dist-info/top_level.txt'
2021-07-10T02:06:42,975   adding 'vdj-1.6.0.dist-info/RECORD'
2021-07-10T02:06:42,977   removing build/bdist.linux-armv7l/wheel
2021-07-10T02:06:43,126   Building wheel for vdj (setup.py): finished with status 'done'
2021-07-10T02:06:43,129   Created wheel for vdj: filename=vdj-1.6.0-cp39-cp39-linux_armv7l.whl size=28407 sha256=e1c2a7b62af303049b3d00ce21c6d62ed3fe6bb134679aa82266ff6d3c6e83f5
2021-07-10T02:06:43,129   Stored in directory: /tmp/pip-ephem-wheel-cache-7ltxhh68/wheels/c0/0d/61/08aa58c80c3a70cde96ea2b4b81d17359abccacb3758fd3fc9
2021-07-10T02:06:43,138 Successfully built vdj
2021-07-10T02:06:43,142 Removed build tracker: '/tmp/pip-req-tracker-i7s8n8gu'