2021-07-10T02:49:35,473 Created temporary directory: /tmp/pip-ephem-wheel-cache-zr1lmqaj 2021-07-10T02:49:35,476 Created temporary directory: /tmp/pip-req-tracker-skoic5aw 2021-07-10T02:49:35,477 Initialized build tracking at /tmp/pip-req-tracker-skoic5aw 2021-07-10T02:49:35,477 Created build tracker: /tmp/pip-req-tracker-skoic5aw 2021-07-10T02:49:35,477 Entered build tracker: /tmp/pip-req-tracker-skoic5aw 2021-07-10T02:49:35,478 Created temporary directory: /tmp/pip-wheel-vr9yon8q 2021-07-10T02:49:35,512 1 location(s) to search for versions of biom-format: 2021-07-10T02:49:35,512 * https://pypi.org/simple/biom-format/ 2021-07-10T02:49:35,512 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-10T02:49:35,513 Getting page https://pypi.org/simple/biom-format/ 2021-07-10T02:49:35,514 Found index url https://pypi.org/simple 2021-07-10T02:49:35,697 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-10T02:49:35,698 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-10T02:49:35,698 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-10T02:49:35,698 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-10T02:49:35,698 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-10T02:49:35,699 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-10T02:49:35,699 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-10T02:49:35,700 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-10T02:49:35,700 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-10T02:49:35,700 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-10T02:49:35,701 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-10T02:49:35,701 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-10T02:49:35,718 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-10T02:49:35,718 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-10T02:49:35,719 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-10T02:49:35,719 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-10T02:49:35,720 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-10T02:49:35,720 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-10T02:49:35,720 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-10T02:49:35,723 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-10T02:49:35,742 Collecting biom-format==2.1.3 2021-07-10T02:49:35,743 Created temporary directory: /tmp/pip-unpack-xi7eyuri 2021-07-10T02:49:36,272 Downloading biom-format-2.1.3.tar.gz (571 kB) 2021-07-10T02:49:36,676 Added biom-format==2.1.3 from https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 to build tracker '/tmp/pip-req-tracker-skoic5aw' 2021-07-10T02:49:36,677 Running setup.py (path:/tmp/pip-wheel-vr9yon8q/biom-format_46795903f57b4dafb7148f46b0f987e5/setup.py) egg_info for package biom-format 2021-07-10T02:49:36,678 Created temporary directory: /tmp/pip-pip-egg-info-s67ux9vd 2021-07-10T02:49:36,678 Running command python setup.py egg_info 2021-07-10T02:49:37,746 running egg_info 2021-07-10T02:49:37,748 creating /tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info 2021-07-10T02:49:37,749 writing /tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info/PKG-INFO 2021-07-10T02:49:37,751 writing dependency_links to /tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info/dependency_links.txt 2021-07-10T02:49:37,753 writing requirements to /tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info/requires.txt 2021-07-10T02:49:37,754 writing top-level names to /tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info/top_level.txt 2021-07-10T02:49:37,756 writing manifest file '/tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info/SOURCES.txt' 2021-07-10T02:49:38,108 reading manifest file '/tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info/SOURCES.txt' 2021-07-10T02:49:38,110 reading manifest template 'MANIFEST.in' 2021-07-10T02:49:38,124 no previously-included directories found matching 'docs/_build' 2021-07-10T02:49:38,124 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T02:49:38,125 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T02:49:38,126 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T02:49:38,126 adding license file 'COPYING.txt' 2021-07-10T02:49:38,131 writing manifest file '/tmp/pip-pip-egg-info-s67ux9vd/biom_format.egg-info/SOURCES.txt' 2021-07-10T02:49:38,237 Source in /tmp/pip-wheel-vr9yon8q/biom-format_46795903f57b4dafb7148f46b0f987e5 has version 2.1.3, which satisfies requirement biom-format==2.1.3 from https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 2021-07-10T02:49:38,238 Removed biom-format==2.1.3 from https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 from build tracker '/tmp/pip-req-tracker-skoic5aw' 2021-07-10T02:49:38,242 Created temporary directory: /tmp/pip-unpack-npt2w1dn 2021-07-10T02:49:38,243 Building wheels for collected packages: biom-format 2021-07-10T02:49:38,247 Created temporary directory: /tmp/pip-wheel-u3_edq5w 2021-07-10T02:49:38,247 Building wheel for biom-format (setup.py): started 2021-07-10T02:49:38,247 Destination directory: /tmp/pip-wheel-u3_edq5w 2021-07-10T02:49:38,248 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vr9yon8q/biom-format_46795903f57b4dafb7148f46b0f987e5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vr9yon8q/biom-format_46795903f57b4dafb7148f46b0f987e5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u3_edq5w 2021-07-10T02:49:39,293 running bdist_wheel 2021-07-10T02:49:39,488 running build 2021-07-10T02:49:39,488 running build_py 2021-07-10T02:49:39,622 creating build 2021-07-10T02:49:39,622 creating build/lib.linux-armv7l-3.9 2021-07-10T02:49:39,623 creating build/lib.linux-armv7l-3.9/biom 2021-07-10T02:49:39,624 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:49:39,626 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:49:39,628 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:49:39,630 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:49:39,632 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:49:39,638 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T02:49:39,642 creating build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,643 copying biom/commands/table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,645 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,648 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,651 copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,652 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,655 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,657 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,660 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T02:49:39,663 creating build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T02:49:39,664 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T02:49:39,667 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:49:39,668 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:49:39,670 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:49:39,672 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T02:49:39,675 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,675 copying biom/interfaces/optparse/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,678 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,679 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,681 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,683 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,685 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,687 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,689 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T02:49:39,692 creating build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:49:39,693 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:49:39,695 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:49:39,696 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T02:49:39,699 creating build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,700 copying biom/interfaces/html/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,702 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,704 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,706 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,708 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,710 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,712 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T02:49:39,719 running build_ext 2021-07-10T02:49:39,725 building 'biom._filter' extension 2021-07-10T02:49:39,725 creating build/temp.linux-armv7l-3.9 2021-07-10T02:49:39,726 creating build/temp.linux-armv7l-3.9/biom 2021-07-10T02:49:39,726 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-10T02:49:40,135 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T02:49:40,135 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T02:49:40,135 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:49:40,136 from biom/_filter.c:346: 2021-07-10T02:49:40,136 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T02:49:40,136 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T02:49:40,136 | ^~~~~~~ 2021-07-10T02:49:40,316 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T02:49:40,320 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,320 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,320 | ^ 2021-07-10T02:49:40,320 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,320 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,321 from biom/_filter.c:16: 2021-07-10T02:49:40,321 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,321 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,321 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,324 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,324 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,324 | ^ 2021-07-10T02:49:40,325 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,325 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,325 from biom/_filter.c:16: 2021-07-10T02:49:40,325 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:40,325 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:40,325 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,328 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,328 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,328 | ^ 2021-07-10T02:49:40,329 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,329 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,329 from biom/_filter.c:16: 2021-07-10T02:49:40,329 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,329 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,329 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,332 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,332 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,332 | ^ 2021-07-10T02:49:40,332 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,333 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,333 from biom/_filter.c:16: 2021-07-10T02:49:40,333 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,333 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,333 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,336 biom/_filter.c:6661:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,336 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,336 | ^ 2021-07-10T02:49:40,336 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,336 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,337 from biom/_filter.c:16: 2021-07-10T02:49:40,337 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:40,337 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:40,337 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,340 biom/_filter.c:6661:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,340 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,340 | ^ 2021-07-10T02:49:40,340 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,340 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,341 from biom/_filter.c:16: 2021-07-10T02:49:40,341 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,341 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,341 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,345 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,345 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,345 | ^ 2021-07-10T02:49:40,345 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,345 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,346 from biom/_filter.c:16: 2021-07-10T02:49:40,346 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,346 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,349 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,349 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,349 | ^ 2021-07-10T02:49:40,349 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,349 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,349 from biom/_filter.c:16: 2021-07-10T02:49:40,350 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:40,350 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:40,350 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,353 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,353 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,353 | ^ 2021-07-10T02:49:40,353 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,353 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,353 from biom/_filter.c:16: 2021-07-10T02:49:40,353 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,354 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,354 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,356 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,357 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,357 | ^ 2021-07-10T02:49:40,357 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,357 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,357 from biom/_filter.c:16: 2021-07-10T02:49:40,357 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,357 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,358 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,360 biom/_filter.c:6677:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,361 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,361 | ^ 2021-07-10T02:49:40,361 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,361 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,361 from biom/_filter.c:16: 2021-07-10T02:49:40,361 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:40,361 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:40,361 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,364 biom/_filter.c:6677:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:40,364 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:40,365 | ^ 2021-07-10T02:49:40,365 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:40,365 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:40,365 from biom/_filter.c:16: 2021-07-10T02:49:40,365 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:40,365 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:40,365 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:40,481 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T02:49:40,481 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:49:40,481 from biom/_filter.c:346: 2021-07-10T02:49:40,481 At top level: 2021-07-10T02:49:40,482 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T02:49:40,482 1464 | _import_array(void) 2021-07-10T02:49:40,482 | ^~~~~~~~~~~~~ 2021-07-10T02:49:45,676 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-10T02:49:45,809 building 'biom._transform' extension 2021-07-10T02:49:45,809 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-10T02:49:46,178 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T02:49:46,179 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T02:49:46,179 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:49:46,179 from biom/_transform.c:346: 2021-07-10T02:49:46,179 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T02:49:46,179 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T02:49:46,179 | ^~~~~~~ 2021-07-10T02:49:46,262 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T02:49:46,264 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,264 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,264 | ^ 2021-07-10T02:49:46,264 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,265 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,265 from biom/_transform.c:16: 2021-07-10T02:49:46,265 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,265 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,265 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,267 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,267 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,267 | ^ 2021-07-10T02:49:46,267 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,267 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,267 from biom/_transform.c:16: 2021-07-10T02:49:46,268 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:46,268 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:46,268 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,269 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,269 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,269 | ^ 2021-07-10T02:49:46,269 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,269 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,270 from biom/_transform.c:16: 2021-07-10T02:49:46,270 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,270 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,270 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,271 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,271 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,271 | ^ 2021-07-10T02:49:46,272 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,272 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,272 from biom/_transform.c:16: 2021-07-10T02:49:46,272 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,272 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,272 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,273 biom/_transform.c:4076:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,273 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,274 | ^ 2021-07-10T02:49:46,274 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,274 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,274 from biom/_transform.c:16: 2021-07-10T02:49:46,274 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:46,274 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:46,274 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,275 biom/_transform.c:4076:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,276 4076 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,276 | ^ 2021-07-10T02:49:46,276 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,276 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,276 from biom/_transform.c:16: 2021-07-10T02:49:46,276 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,276 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,276 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,278 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,279 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,279 | ^ 2021-07-10T02:49:46,279 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,279 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,279 from biom/_transform.c:16: 2021-07-10T02:49:46,279 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,279 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,281 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,281 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,281 | ^ 2021-07-10T02:49:46,281 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,281 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,281 from biom/_transform.c:16: 2021-07-10T02:49:46,281 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:46,282 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:46,282 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,283 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,283 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,283 | ^ 2021-07-10T02:49:46,283 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,283 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,284 from biom/_transform.c:16: 2021-07-10T02:49:46,284 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,284 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,285 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,285 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,285 | ^ 2021-07-10T02:49:46,285 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,286 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,286 from biom/_transform.c:16: 2021-07-10T02:49:46,286 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,286 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,286 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,287 biom/_transform.c:4092:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,287 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,288 | ^ 2021-07-10T02:49:46,288 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,288 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,288 from biom/_transform.c:16: 2021-07-10T02:49:46,288 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:46,288 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:46,288 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,289 biom/_transform.c:4092:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:46,290 4092 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:46,290 | ^ 2021-07-10T02:49:46,290 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:46,290 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:46,290 from biom/_transform.c:16: 2021-07-10T02:49:46,290 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:46,290 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:46,290 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:46,405 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T02:49:46,405 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:49:46,405 from biom/_transform.c:346: 2021-07-10T02:49:46,405 At top level: 2021-07-10T02:49:46,406 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T02:49:46,406 1464 | _import_array(void) 2021-07-10T02:49:46,406 | ^~~~~~~~~~~~~ 2021-07-10T02:49:48,085 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-10T02:49:48,203 building 'biom._subsample' extension 2021-07-10T02:49:48,204 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-10T02:49:48,584 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T02:49:48,584 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T02:49:48,584 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:49:48,585 from biom/_subsample.c:346: 2021-07-10T02:49:48,585 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T02:49:48,585 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T02:49:48,585 | ^~~~~~~ 2021-07-10T02:49:48,678 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T02:49:48,681 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,681 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,681 | ^ 2021-07-10T02:49:48,682 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,682 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,682 from biom/_subsample.c:16: 2021-07-10T02:49:48,682 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,682 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,682 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,685 biom/_subsample.c:4440:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,685 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,685 | ^ 2021-07-10T02:49:48,685 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,685 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,686 from biom/_subsample.c:16: 2021-07-10T02:49:48,686 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:48,686 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:48,686 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,688 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,688 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,689 | ^ 2021-07-10T02:49:48,689 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,689 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,689 from biom/_subsample.c:16: 2021-07-10T02:49:48,689 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,689 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,689 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,691 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,692 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,692 | ^ 2021-07-10T02:49:48,692 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,692 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,692 from biom/_subsample.c:16: 2021-07-10T02:49:48,692 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,692 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,692 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,695 biom/_subsample.c:4440:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,695 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,695 | ^ 2021-07-10T02:49:48,695 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,695 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,695 from biom/_subsample.c:16: 2021-07-10T02:49:48,695 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:48,696 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:48,696 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,698 biom/_subsample.c:4440:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,698 4440 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,698 | ^ 2021-07-10T02:49:48,698 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,699 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,699 from biom/_subsample.c:16: 2021-07-10T02:49:48,699 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,699 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,699 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,702 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,702 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,702 | ^ 2021-07-10T02:49:48,703 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,703 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,703 from biom/_subsample.c:16: 2021-07-10T02:49:48,703 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,703 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,703 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,705 biom/_subsample.c:4456:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,706 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,706 | ^ 2021-07-10T02:49:48,706 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,706 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,706 from biom/_subsample.c:16: 2021-07-10T02:49:48,706 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:48,706 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:48,706 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,709 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,709 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,709 | ^ 2021-07-10T02:49:48,709 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,709 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,709 from biom/_subsample.c:16: 2021-07-10T02:49:48,709 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,710 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,710 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,712 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,712 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,712 | ^ 2021-07-10T02:49:48,712 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,712 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,713 from biom/_subsample.c:16: 2021-07-10T02:49:48,713 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,713 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,713 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,715 biom/_subsample.c:4456:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,715 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,715 | ^ 2021-07-10T02:49:48,716 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,716 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,716 from biom/_subsample.c:16: 2021-07-10T02:49:48,716 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T02:49:48,716 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T02:49:48,716 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,718 biom/_subsample.c:4456:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T02:49:48,719 4456 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T02:49:48,719 | ^ 2021-07-10T02:49:48,719 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T02:49:48,719 from /usr/include/python3.9/Python.h:97, 2021-07-10T02:49:48,719 from biom/_subsample.c:16: 2021-07-10T02:49:48,719 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T02:49:48,719 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T02:49:48,719 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T02:49:48,865 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T02:49:48,866 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T02:49:48,866 from biom/_subsample.c:346: 2021-07-10T02:49:48,866 At top level: 2021-07-10T02:49:48,866 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T02:49:48,866 1464 | _import_array(void) 2021-07-10T02:49:48,867 | ^~~~~~~~~~~~~ 2021-07-10T02:49:52,253 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-10T02:49:52,382 running build_scripts 2021-07-10T02:49:52,382 creating build/scripts-3.9 2021-07-10T02:49:52,384 copying scripts/biom -> build/scripts-3.9 2021-07-10T02:49:52,386 copying scripts/serve-biom -> build/scripts-3.9 2021-07-10T02:49:52,388 changing mode of build/scripts-3.9/serve-biom from 644 to 755 2021-07-10T02:49:52,396 installing to build/bdist.linux-armv7l/wheel 2021-07-10T02:49:52,396 running install 2021-07-10T02:49:52,398 running install_lib 2021-07-10T02:49:52,402 creating build/bdist.linux-armv7l 2021-07-10T02:49:52,402 creating build/bdist.linux-armv7l/wheel 2021-07-10T02:49:52,405 creating build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,407 creating build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,408 copying build/lib.linux-armv7l-3.9/biom/commands/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,410 copying build/lib.linux-armv7l-3.9/biom/commands/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,414 copying build/lib.linux-armv7l-3.9/biom/commands/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,416 copying build/lib.linux-armv7l-3.9/biom/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,418 copying build/lib.linux-armv7l-3.9/biom/commands/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,420 copying build/lib.linux-armv7l-3.9/biom/commands/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,422 copying build/lib.linux-armv7l-3.9/biom/commands/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,425 copying build/lib.linux-armv7l-3.9/biom/commands/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T02:49:52,427 copying build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,435 copying build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,447 copying build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,453 copying build/lib.linux-armv7l-3.9/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,455 copying build/lib.linux-armv7l-3.9/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,457 copying build/lib.linux-armv7l-3.9/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,460 creating build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-10T02:49:52,460 copying build/lib.linux-armv7l-3.9/biom/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-10T02:49:52,463 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:49:52,464 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,465 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,467 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,469 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,470 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,472 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,474 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,477 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T02:49:52,479 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:49:52,481 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:49:52,482 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T02:49:52,485 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:49:52,486 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,487 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,489 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,491 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,493 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,495 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,497 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,499 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/subset_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,502 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T02:49:52,504 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:49:52,506 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:49:52,507 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T02:49:52,509 copying build/lib.linux-armv7l-3.9/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,512 copying build/lib.linux-armv7l-3.9/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,518 copying build/lib.linux-armv7l-3.9/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T02:49:52,520 running install_egg_info 2021-07-10T02:49:52,542 running egg_info 2021-07-10T02:49:52,542 writing biom_format.egg-info/PKG-INFO 2021-07-10T02:49:52,544 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-10T02:49:52,546 writing requirements to biom_format.egg-info/requires.txt 2021-07-10T02:49:52,547 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-10T02:49:52,562 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T02:49:52,573 reading manifest template 'MANIFEST.in' 2021-07-10T02:49:52,584 no previously-included directories found matching 'docs/_build' 2021-07-10T02:49:52,585 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T02:49:52,586 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T02:49:52,587 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T02:49:52,588 adding license file 'COPYING.txt' 2021-07-10T02:49:52,595 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T02:49:52,597 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.3-py3.9.egg-info 2021-07-10T02:49:52,608 running install_scripts 2021-07-10T02:49:52,692 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.3.data 2021-07-10T02:49:52,693 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.3.data/scripts 2021-07-10T02:49:52,694 copying build/scripts-3.9/biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.3.data/scripts 2021-07-10T02:49:52,696 copying build/scripts-3.9/serve-biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.3.data/scripts 2021-07-10T02:49:52,697 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.3.data/scripts/biom to 755 2021-07-10T02:49:52,698 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.3.data/scripts/serve-biom to 755 2021-07-10T02:49:52,724 adding license file "COPYING.txt" (matched pattern "COPYING*") 2021-07-10T02:49:52,728 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.3.dist-info/WHEEL 2021-07-10T02:49:52,731 creating '/tmp/pip-wheel-u3_edq5w/biom_format-2.1.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T02:49:52,734 adding 'biom/__init__.py' 2021-07-10T02:49:52,811 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T02:49:52,860 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T02:49:52,889 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T02:49:52,892 adding 'biom/err.py' 2021-07-10T02:49:52,893 adding 'biom/exception.py' 2021-07-10T02:49:52,896 adding 'biom/parse.py' 2021-07-10T02:49:52,912 adding 'biom/table.py' 2021-07-10T02:49:52,916 adding 'biom/util.py' 2021-07-10T02:49:52,918 adding 'biom/commands/__init__.py' 2021-07-10T02:49:52,919 adding 'biom/commands/installation_informer.py' 2021-07-10T02:49:52,921 adding 'biom/commands/metadata_adder.py' 2021-07-10T02:49:52,922 adding 'biom/commands/table_converter.py' 2021-07-10T02:49:52,924 adding 'biom/commands/table_normalizer.py' 2021-07-10T02:49:52,925 adding 'biom/commands/table_subsetter.py' 2021-07-10T02:49:52,927 adding 'biom/commands/table_summarizer.py' 2021-07-10T02:49:52,929 adding 'biom/commands/table_validator.py' 2021-07-10T02:49:52,931 adding 'biom/interfaces/__init__.py' 2021-07-10T02:49:52,933 adding 'biom/interfaces/html/__init__.py' 2021-07-10T02:49:52,934 adding 'biom/interfaces/html/input_handler.py' 2021-07-10T02:49:52,935 adding 'biom/interfaces/html/output_handler.py' 2021-07-10T02:49:52,937 adding 'biom/interfaces/html/config/__init__.py' 2021-07-10T02:49:52,938 adding 'biom/interfaces/html/config/add_metadata.py' 2021-07-10T02:49:52,939 adding 'biom/interfaces/html/config/convert.py' 2021-07-10T02:49:52,941 adding 'biom/interfaces/html/config/normalize_table.py' 2021-07-10T02:49:52,942 adding 'biom/interfaces/html/config/show_install_info.py' 2021-07-10T02:49:52,943 adding 'biom/interfaces/html/config/summarize_table.py' 2021-07-10T02:49:52,944 adding 'biom/interfaces/html/config/validate_table.py' 2021-07-10T02:49:52,946 adding 'biom/interfaces/optparse/__init__.py' 2021-07-10T02:49:52,947 adding 'biom/interfaces/optparse/input_handler.py' 2021-07-10T02:49:52,949 adding 'biom/interfaces/optparse/output_handler.py' 2021-07-10T02:49:52,951 adding 'biom/interfaces/optparse/config/__init__.py' 2021-07-10T02:49:52,952 adding 'biom/interfaces/optparse/config/add_metadata.py' 2021-07-10T02:49:52,953 adding 'biom/interfaces/optparse/config/convert.py' 2021-07-10T02:49:52,955 adding 'biom/interfaces/optparse/config/normalize_table.py' 2021-07-10T02:49:52,956 adding 'biom/interfaces/optparse/config/show_install_info.py' 2021-07-10T02:49:52,957 adding 'biom/interfaces/optparse/config/subset_table.py' 2021-07-10T02:49:52,959 adding 'biom/interfaces/optparse/config/summarize_table.py' 2021-07-10T02:49:52,960 adding 'biom/interfaces/optparse/config/validate_table.py' 2021-07-10T02:49:52,962 adding 'biom_format-2.1.3.data/scripts/biom' 2021-07-10T02:49:52,963 adding 'biom_format-2.1.3.data/scripts/serve-biom' 2021-07-10T02:49:52,966 adding 'biom_format-2.1.3.dist-info/COPYING.txt' 2021-07-10T02:49:52,967 adding 'biom_format-2.1.3.dist-info/METADATA' 2021-07-10T02:49:52,968 adding 'biom_format-2.1.3.dist-info/WHEEL' 2021-07-10T02:49:52,968 adding 'biom_format-2.1.3.dist-info/top_level.txt' 2021-07-10T02:49:52,969 adding 'biom_format-2.1.3.dist-info/RECORD' 2021-07-10T02:49:52,977 removing build/bdist.linux-armv7l/wheel 2021-07-10T02:49:53,116 Building wheel for biom-format (setup.py): finished with status 'done' 2021-07-10T02:49:53,122 Created wheel for biom-format: filename=biom_format-2.1.3-cp39-cp39-linux_armv7l.whl size=370289 sha256=cbb92ecf56d7051df6a9f3f851e39e1efc3be3e1f1f7b9b9100f430773310fc2 2021-07-10T02:49:53,123 Stored in directory: /tmp/pip-ephem-wheel-cache-zr1lmqaj/wheels/44/da/e5/fd081db7f307b665a366fca01ebd3e2644a07fe22657974810 2021-07-10T02:49:53,135 Successfully built biom-format 2021-07-10T02:49:53,152 Removed build tracker: '/tmp/pip-req-tracker-skoic5aw'