2021-07-10T02:54:14,760 Created temporary directory: /tmp/pip-ephem-wheel-cache-pvf5lf1w
2021-07-10T02:54:14,763 Created temporary directory: /tmp/pip-req-tracker-pe_cs13h
2021-07-10T02:54:14,764 Initialized build tracking at /tmp/pip-req-tracker-pe_cs13h
2021-07-10T02:54:14,764 Created build tracker: /tmp/pip-req-tracker-pe_cs13h
2021-07-10T02:54:14,764 Entered build tracker: /tmp/pip-req-tracker-pe_cs13h
2021-07-10T02:54:14,765 Created temporary directory: /tmp/pip-wheel-69zqq09f
2021-07-10T02:54:14,798 1 location(s) to search for versions of taggd:
2021-07-10T02:54:14,798 * https://pypi.org/simple/taggd/
2021-07-10T02:54:14,799 Fetching project page and analyzing links: https://pypi.org/simple/taggd/
2021-07-10T02:54:14,799 Getting page https://pypi.org/simple/taggd/
2021-07-10T02:54:14,800 Found index url https://pypi.org/simple
2021-07-10T02:54:14,901   Found link https://files.pythonhosted.org/packages/f2/b7/36ca98726ce8b464c882278fb46f42bbdc7a0f91a684402cdc318e278aa4/taggd-0.1.tar.gz#sha256=04d5622352f4d72599901e9e5a60f2116ac714c7d26ddf395d2871ada62f97f0 (from https://pypi.org/simple/taggd/), version: 0.1
2021-07-10T02:54:14,902   Found link https://files.pythonhosted.org/packages/c8/5f/dd72fc95e1de93012ee7423d3d92dfc7c6a3410502c621efd3cccdd3ee0e/taggd-0.1.1.tar.gz#sha256=47a6cd01a610915a1d9301c814589a7b1adc9705d34cd6c6f57c2a79e11ef091 (from https://pypi.org/simple/taggd/), version: 0.1.1
2021-07-10T02:54:14,902   Found link https://files.pythonhosted.org/packages/83/a4/870664fb654229dd89ac88b57c8b160e7d41549cbf9a656f6c1460bdc851/taggd-0.1.2.tar.gz#sha256=58e34eb164a3a7605fc61f381fb5fc2af784e7bf3a7baea71b517e5f65583400 (from https://pypi.org/simple/taggd/), version: 0.1.2
2021-07-10T02:54:14,902   Found link https://files.pythonhosted.org/packages/6a/76/ee7fb355af60f4c3fdc98ee75577310230777d6d9cf296e39de5831c6c84/taggd-0.1.3.tar.gz#sha256=23069ccd9eff05b8e0f44645dfb1a3154e69e8531e48392f8e65930a5df9683d (from https://pypi.org/simple/taggd/), version: 0.1.3
2021-07-10T02:54:14,903   Found link https://files.pythonhosted.org/packages/23/aa/2346e679b0f868f2d588aa88e236001670ec9ab3163f537ebe3e3881a5a0/taggd-0.1.4.tar.gz#sha256=190659c5396819afa8b1fff109b37b0b63c89226c9882c76247563b26e5afce1 (from https://pypi.org/simple/taggd/), version: 0.1.4
2021-07-10T02:54:14,903   Found link https://files.pythonhosted.org/packages/3d/2e/92721146af50bbcc58ee99f183dd23fd843dcc9d868258bfd70f203ea837/taggd-0.1.5.tar.gz#sha256=3f57c58ca0ef814dacc1fcf6045afa224dcd28a54fbfa049d3b0affd5a66dc34 (from https://pypi.org/simple/taggd/), version: 0.1.5
2021-07-10T02:54:14,903   Found link https://files.pythonhosted.org/packages/b9/7d/da462254ca0713d367f38d3fce3846b6967c3e766d7b21db8c65c2183f02/taggd-0.1.6.tar.gz#sha256=2bf18f7a312f79f51a48c59648bc1232eef52ff0a689075110fd410b6d0c9ab1 (from https://pypi.org/simple/taggd/), version: 0.1.6
2021-07-10T02:54:14,904   Found link https://files.pythonhosted.org/packages/ef/38/d895a7300371cc07f17d3cfd59b813a57f186995c6734e432756bcb4d401/taggd-0.1.7.tar.gz#sha256=fc0aceeb1f5c41e4796498ffbc7bb55003486b4186fa8206c48d36e6bb4e7968 (from https://pypi.org/simple/taggd/), version: 0.1.7
2021-07-10T02:54:14,904   Found link https://files.pythonhosted.org/packages/55/53/26cb9ac8f8cba55044d889c54e347e0b9ebb069c61a56a348bfdbd7e8cfd/taggd-0.1.8.tar.gz#sha256=f0346fb53e531bed916195b389eae2fb8a5fc8903829818d9dbb29c02db8c062 (from https://pypi.org/simple/taggd/), version: 0.1.8
2021-07-10T02:54:14,904   Found link https://files.pythonhosted.org/packages/bf/84/6cc7d2a29fe35ac8b96484c82ef1b2594708195f1e6a9f6075f86d8b385a/taggd-0.1.9.tar.gz#sha256=b81fa0e136bb718dc02fbcc617e359e6114f506928a3762c2188b6ea47fcbf78 (from https://pypi.org/simple/taggd/), version: 0.1.9
2021-07-10T02:54:14,904   Found link https://files.pythonhosted.org/packages/ab/03/33351507f1b73a199011827cadc68c83cd1a8094c95521be66030e016354/taggd-0.1.10.tar.gz#sha256=eb228f675ebf95bd8ce7ca145d89b00cd4eb2332d16d48e9b4b3ed50caa12cff (from https://pypi.org/simple/taggd/), version: 0.1.10
2021-07-10T02:54:14,905   Found link https://files.pythonhosted.org/packages/48/73/bf5038060581f4f8eb53009a6dc8d5f97aa6676118f32e0980aa6d1bfb2f/taggd-0.1.11.tar.gz#sha256=822c2a698b664fa1951a2c753897550b178d720818992d517554e9afe5bf4ff0 (from https://pypi.org/simple/taggd/), version: 0.1.11
2021-07-10T02:54:14,905   Found link https://files.pythonhosted.org/packages/c9/db/c3a386b26e75f62e241334998585c16f7638805ddf4ac0a6276cdf9c1fda/taggd-0.1.13.tar.gz#sha256=05fa5c68cb9aa934a85662a4f38f27647c22c8feb580cde30918c4c6b8295853 (from https://pypi.org/simple/taggd/), version: 0.1.13
2021-07-10T02:54:14,905   Found link https://files.pythonhosted.org/packages/1a/81/2d76da03cf81eff9aa8b4e961685f176201d0950001409f103ac5e4f7fff/taggd-0.2.1.tar.gz#sha256=9e9e4f8e6db74ddf3d7d31bb1ef73945203c9c3ce021ea8a5d7b8158cde78f3c (from https://pypi.org/simple/taggd/), version: 0.2.1
2021-07-10T02:54:14,905   Found link https://files.pythonhosted.org/packages/91/a3/b6dda7ebbb357d71c803193e14fa5990609a004498a154f26ade1cbca96d/taggd-0.2.2.tar.gz#sha256=33220f80f0cca345ff82ee6dc1742f502798c4d8a1caa8373ecc07ced8a7d604 (from https://pypi.org/simple/taggd/), version: 0.2.2
2021-07-10T02:54:14,906   Found link https://files.pythonhosted.org/packages/51/a4/928a1826fb3c8c8d68595a63e11c507e3177ec6821c1edbeca1191f0f6b2/taggd-0.2.4.tar.gz#sha256=45ecd748f776bc2db624f740caa348c13e769021bad26c0453f100c0a2f79009 (from https://pypi.org/simple/taggd/), version: 0.2.4
2021-07-10T02:54:14,906   Found link https://files.pythonhosted.org/packages/b7/f4/7d3ed384ac67bdfd3f838d4fa4f526b302ef4c999daa5609d6515d577f11/taggd-0.2.5.tar.gz#sha256=ea3fc61d564f7a127bb3b9b416dbb7b9aa42b6980b2d365d56a84dbe23610d8b (from https://pypi.org/simple/taggd/), version: 0.2.5
2021-07-10T02:54:14,906   Found link https://files.pythonhosted.org/packages/bc/6f/99f70667d1b26996dffce75df62b16ed6b3d6f964dbc8d52980cb1b2fddc/taggd-0.2.6.tar.gz#sha256=c093da41babfbc4477c3d915484902e1669e7662fdc0b944eb0a2c7a9a08b0a5 (from https://pypi.org/simple/taggd/), version: 0.2.6
2021-07-10T02:54:14,907   Found link https://files.pythonhosted.org/packages/86/c7/a4d7ca34aa38b7cffb0d9cbb246f442295991f2aa33b3501f61f371abc00/taggd-0.2.7.tar.gz#sha256=4fd8e602b8982c81bad694820a4b7bebec879b3333cfc3b1b666fd05f99b9b29 (from https://pypi.org/simple/taggd/), version: 0.2.7
2021-07-10T02:54:14,907   Found link https://files.pythonhosted.org/packages/1a/4e/a4db8f27ca87d13e6da59823911524f14cecf9785d837e905b4e08aabd82/taggd-0.2.8.tar.gz#sha256=2c352b94b291a859f200b0eb8ab20978ccbc2dfa2cebeea957c52c600f1b1139 (from https://pypi.org/simple/taggd/), version: 0.2.8
2021-07-10T02:54:14,907   Found link https://files.pythonhosted.org/packages/c6/1b/be466956084f92f3395e04d5e5f6bfc2c1f116b27de87b7b57df0e8777fb/taggd-0.2.9.tar.gz#sha256=b9045ba32284cacf774ee6da2888b50eccf41cbd258bc7cbfba3bfd054f4dbf5 (from https://pypi.org/simple/taggd/), version: 0.2.9
2021-07-10T02:54:14,907   Found link https://files.pythonhosted.org/packages/00/7d/a504c831f8d10e75048c111138e2d2b4f8a6efe37644d37cf5efb4091c7b/taggd-0.3.0.tar.gz#sha256=8ad053e12039dd7745b62c12fc8c256176a25c25c62fdb40a7e681464a845eee (from https://pypi.org/simple/taggd/), version: 0.3.0
2021-07-10T02:54:14,908   Found link https://files.pythonhosted.org/packages/94/cf/d6242bc5a79930ed34132dd56fda62887f514ccf7a93cc74a226cbc16afd/taggd-0.3.1.tar.gz#sha256=a0e8bc1e2a4288a8b0f2b2e7dfcd567713d831a91e1552660fce679d5226282b (from https://pypi.org/simple/taggd/), version: 0.3.1
2021-07-10T02:54:14,908   Found link https://files.pythonhosted.org/packages/39/a8/e661556b87535eb5d0826242b6adbe2120f3608081c3952fd3ec62456ec9/taggd-0.3.2.tar.gz#sha256=f6718c426d8f03d25917b1ba539347f8ebc41ca2f910dc694d87028ef4ed1b67 (from https://pypi.org/simple/taggd/), version: 0.3.2
2021-07-10T02:54:14,908   Found link https://files.pythonhosted.org/packages/b4/30/a8a6ded10799b29764feaf2bdbcc63ea78436058a58d4d2db6208e10d533/taggd-0.3.3.tar.gz#sha256=292ce5ac3b39eea7c052d0e854f8c248b4b03b13fbaa313dc92c2733244ba18b (from https://pypi.org/simple/taggd/), version: 0.3.3
2021-07-10T02:54:14,908   Found link https://files.pythonhosted.org/packages/77/3e/a5845fb5663418ef4486b98c1a5f4e31cd0a2fd81c6d3385e74092379860/taggd-0.3.5.tar.gz#sha256=e88dd389dd871d105a6166d7ef05b26b913e61ee0f8b1357cdd659a2ed2c8241 (from https://pypi.org/simple/taggd/), version: 0.3.5
2021-07-10T02:54:14,909   Found link https://files.pythonhosted.org/packages/0a/1f/ff892c25671db4e279b8ea1c8ccf296bf9d7151bc5ce3711196847101b54/taggd-0.3.6.tar.gz#sha256=f02604b2b1a553f243b2543012db0ce80e13213ffd2cc439d888ba7a47c34c5e (from https://pypi.org/simple/taggd/), version: 0.3.6
2021-07-10T02:54:14,909 Skipping link: not a file: https://pypi.org/simple/taggd/
2021-07-10T02:54:14,930 Given no hashes to check 1 links for project 'taggd': discarding no candidates
2021-07-10T02:54:14,948 Collecting taggd==0.1.1
2021-07-10T02:54:14,950   Created temporary directory: /tmp/pip-unpack-e2fbmqvu
2021-07-10T02:54:15,125   Downloading taggd-0.1.1.tar.gz (14 kB)
2021-07-10T02:54:15,209   Added taggd==0.1.1 from https://files.pythonhosted.org/packages/c8/5f/dd72fc95e1de93012ee7423d3d92dfc7c6a3410502c621efd3cccdd3ee0e/taggd-0.1.1.tar.gz#sha256=47a6cd01a610915a1d9301c814589a7b1adc9705d34cd6c6f57c2a79e11ef091 to build tracker '/tmp/pip-req-tracker-pe_cs13h'
2021-07-10T02:54:15,210     Running setup.py (path:/tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/setup.py) egg_info for package taggd
2021-07-10T02:54:15,211     Created temporary directory: /tmp/pip-pip-egg-info-xi8rtc5a
2021-07-10T02:54:15,211     Running command python setup.py egg_info
2021-07-10T02:54:16,359     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-10T02:54:16,360       warnings.warn(
2021-07-10T02:54:16,377     running egg_info
2021-07-10T02:54:16,380     creating /tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info
2021-07-10T02:54:16,381     writing /tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info/PKG-INFO
2021-07-10T02:54:16,383     writing dependency_links to /tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info/dependency_links.txt
2021-07-10T02:54:16,385     writing requirements to /tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info/requires.txt
2021-07-10T02:54:16,386     writing top-level names to /tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info/top_level.txt
2021-07-10T02:54:16,387     writing manifest file '/tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info/SOURCES.txt'
2021-07-10T02:54:16,542     reading manifest file '/tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info/SOURCES.txt'
2021-07-10T02:54:16,546     writing manifest file '/tmp/pip-pip-egg-info-xi8rtc5a/taggd.egg-info/SOURCES.txt'
2021-07-10T02:54:16,640   Source in /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c has version 0.1.1, which satisfies requirement taggd==0.1.1 from https://files.pythonhosted.org/packages/c8/5f/dd72fc95e1de93012ee7423d3d92dfc7c6a3410502c621efd3cccdd3ee0e/taggd-0.1.1.tar.gz#sha256=47a6cd01a610915a1d9301c814589a7b1adc9705d34cd6c6f57c2a79e11ef091
2021-07-10T02:54:16,641   Removed taggd==0.1.1 from https://files.pythonhosted.org/packages/c8/5f/dd72fc95e1de93012ee7423d3d92dfc7c6a3410502c621efd3cccdd3ee0e/taggd-0.1.1.tar.gz#sha256=47a6cd01a610915a1d9301c814589a7b1adc9705d34cd6c6f57c2a79e11ef091 from build tracker '/tmp/pip-req-tracker-pe_cs13h'
2021-07-10T02:54:16,645 Created temporary directory: /tmp/pip-unpack-i4nabugm
2021-07-10T02:54:16,646 Building wheels for collected packages: taggd
2021-07-10T02:54:16,650   Created temporary directory: /tmp/pip-wheel-lsc89dln
2021-07-10T02:54:16,651   Building wheel for taggd (setup.py): started
2021-07-10T02:54:16,651   Destination directory: /tmp/pip-wheel-lsc89dln
2021-07-10T02:54:16,651   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lsc89dln
2021-07-10T02:54:17,778   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-10T02:54:17,778     warnings.warn(
2021-07-10T02:54:17,809   running bdist_wheel
2021-07-10T02:54:17,813   running build
2021-07-10T02:54:17,814   running build_py
2021-07-10T02:54:17,948   creating build
2021-07-10T02:54:17,948   creating build/lib.linux-armv7l-3.9
2021-07-10T02:54:17,949   creating build/lib.linux-armv7l-3.9/taggd
2021-07-10T02:54:17,950   copying taggd/__init__.py -> build/lib.linux-armv7l-3.9/taggd
2021-07-10T02:54:17,952   creating build/lib.linux-armv7l-3.9/taggd/core
2021-07-10T02:54:17,953   copying taggd/core/demultiplex.py -> build/lib.linux-armv7l-3.9/taggd/core
2021-07-10T02:54:17,955   copying taggd/core/__init__.py -> build/lib.linux-armv7l-3.9/taggd/core
2021-07-10T02:54:17,958   creating build/lib.linux-armv7l-3.9/taggd/io
2021-07-10T02:54:17,959   copying taggd/io/fastq_utils.py -> build/lib.linux-armv7l-3.9/taggd/io
2021-07-10T02:54:17,961   copying taggd/io/__init__.py -> build/lib.linux-armv7l-3.9/taggd/io
2021-07-10T02:54:17,963   creating build/lib.linux-armv7l-3.9/taggd/misc
2021-07-10T02:54:17,964   copying taggd/misc/__init__.py -> build/lib.linux-armv7l-3.9/taggd/misc
2021-07-10T02:54:17,968   running build_ext
2021-07-10T02:54:18,032   cythoning taggd/core/demultiplex_core_functions.pyx to taggd/core/demultiplex_core_functions.c
2021-07-10T02:54:18,660   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/core/demultiplex_core_functions.pyx
2021-07-10T02:54:18,661     tree = Parsing.p_module(s, pxd, full_module_name)

2021-07-10T02:54:18,914   Error compiling Cython file:
2021-07-10T02:54:18,914   ------------------------------------------------------------
2021-07-10T02:54:18,914   ...

2021-07-10T02:54:18,914   import sys
2021-07-10T02:54:18,914   import multiprocessing as mp
2021-07-10T02:54:18,915   import random
2021-07-10T02:54:18,915   import taggd.core.demultiplex_search_functions as srch
2021-07-10T02:54:18,915   cimport taggd.core.demultiplex_search_functions as srch
2021-07-10T02:54:18,915          ^
2021-07-10T02:54:18,915   ------------------------------------------------------------

2021-07-10T02:54:18,915   taggd/core/demultiplex_core_functions.pyx:10:8: 'taggd/core/demultiplex_search_functions.pxd' not found
2021-07-10T02:54:20,780   cythoning taggd/core/demultiplex_search_functions.pyx to taggd/core/demultiplex_search_functions.c
2021-07-10T02:54:20,786   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/core/demultiplex_search_functions.pyx
2021-07-10T02:54:20,786     tree = Parsing.p_module(s, pxd, full_module_name)

2021-07-10T02:54:20,903   Error compiling Cython file:
2021-07-10T02:54:20,903   ------------------------------------------------------------
2021-07-10T02:54:20,903   ...
2021-07-10T02:54:20,903   cimport taggd.misc.kmer_utils as ku
2021-07-10T02:54:20,903          ^
2021-07-10T02:54:20,903   ------------------------------------------------------------

2021-07-10T02:54:20,903   taggd/core/demultiplex_search_functions.pyx:1:8: 'taggd/misc/kmer_utils.pxd' not found

2021-07-10T02:54:20,909   Error compiling Cython file:
2021-07-10T02:54:20,909   ------------------------------------------------------------
2021-07-10T02:54:20,909   ...
2021-07-10T02:54:20,909   cimport taggd.misc.kmer_utils as ku
2021-07-10T02:54:20,909   cimport taggd.misc.distance_metrics as dm
2021-07-10T02:54:20,909          ^
2021-07-10T02:54:20,909   ------------------------------------------------------------

2021-07-10T02:54:20,910   taggd/core/demultiplex_search_functions.pyx:2:8: 'taggd/misc/distance_metrics.pxd' not found

2021-07-10T02:54:22,528   Error compiling Cython file:
2021-07-10T02:54:22,529   ------------------------------------------------------------
2021-07-10T02:54:22,529   ...
2021-07-10T02:54:22,529       post_overhang = post_overhang_


2021-07-10T02:54:22,529       # Create k-mer mappings with ALL kmers
2021-07-10T02:54:22,529       global kmer2seq
2021-07-10T02:54:22,529       seq2kmer, kmer2seq = ku.get_kmers_dicts(true_barcodes.keys(), k, False, 1)
2021-07-10T02:54:22,529                             ^
2021-07-10T02:54:22,530   ------------------------------------------------------------

2021-07-10T02:54:22,530   taggd/core/demultiplex_search_functions.pyx:66:27: cimported module has no attribute 'get_kmers_dicts'

2021-07-10T02:54:22,540   Error compiling Cython file:
2021-07-10T02:54:22,540   ------------------------------------------------------------
2021-07-10T02:54:22,541   ...
2021-07-10T02:54:22,541       post_overhang = post_overhang_


2021-07-10T02:54:22,541       # Create k-mer mappings with ALL kmers
2021-07-10T02:54:22,541       global kmer2seq
2021-07-10T02:54:22,541       seq2kmer, kmer2seq = ku.get_kmers_dicts(true_barcodes.keys(), k, False, 1)
2021-07-10T02:54:22,542                             ^
2021-07-10T02:54:22,542   ------------------------------------------------------------

2021-07-10T02:54:22,542   taggd/core/demultiplex_search_functions.pyx:66:27: Compiler crash in AnalyseExpressionsTransform

2021-07-10T02:54:22,542   ModuleNode.body = StatListNode(demultiplex_search_functions.pyx:1:0)
2021-07-10T02:54:22,542   StatListNode.stats[15] = StatListNode(demultiplex_search_functions.pyx:28:0)
2021-07-10T02:54:22,542   StatListNode.stats[0] = DefNode(demultiplex_search_functions.pyx:28:0,
2021-07-10T02:54:22,543       doc = '\n    Initializes settings (global variables).\n    :param true_barcodes_: true barcodes dict to attributes.\n    :param k_: the k-mer length used in the search algorithm.\n    :param max_edit_distance_: max allowed distance.\n    :param metric_: distance metric to use, Subglobal, Levenshtein or Hamming.\n    :param slider_increment_: the number of increments for kmer search. The default, 0 sets it to k.\n    :param pre_overhang: pre-read flanking bases.\n    :param post_overhang: post-read flanking bases.\n    ',
2021-07-10T02:54:22,543       modifiers = [...]/0,
2021-07-10T02:54:22,543       name = 'init',
2021-07-10T02:54:22,543       np_args_idx = [...]/0,
2021-07-10T02:54:22,543       num_required_args = 7,
2021-07-10T02:54:22,543       outer_attrs = [...]/2,
2021-07-10T02:54:22,543       py_wrapper_required = True,
2021-07-10T02:54:22,543       reqd_kw_flags_cname = '0',
2021-07-10T02:54:22,543       used = True)
2021-07-10T02:54:22,544   File 'ExprNodes.py', line 3497, in infer_type: IndexNode(demultiplex_search_functions.pyx:66:43,
2021-07-10T02:54:22,544       is_subscript = True,
2021-07-10T02:54:22,544       result_is_used = True,
2021-07-10T02:54:22,544       use_managed_ref = True)
2021-07-10T02:54:22,544   File 'ExprNodes.py', line 5362, in infer_type: SimpleCallNode(demultiplex_search_functions.pyx:66:43,
2021-07-10T02:54:22,544       result_is_used = True,
2021-07-10T02:54:22,544       use_managed_ref = True)
2021-07-10T02:54:22,545   File 'ExprNodes.py', line 6845, in infer_type: AttributeNode(demultiplex_search_functions.pyx:66:27,
2021-07-10T02:54:22,545       attribute = 'get_kmers_dicts',
2021-07-10T02:54:22,545       is_attribute = 1,
2021-07-10T02:54:22,545       needs_none_check = True,
2021-07-10T02:54:22,545       result_is_used = True,
2021-07-10T02:54:22,546       use_managed_ref = True)

2021-07-10T02:54:22,546   Compiler crash traceback from this point on:
2021-07-10T02:54:22,546     File "/usr/local/lib/python3.9/dist-packages/Cython/Compiler/ExprNodes.py", line 6845, in infer_type
2021-07-10T02:54:22,546       if node.entry.type and node.entry.type.is_cfunction:
2021-07-10T02:54:22,546   AttributeError: 'NoneType' object has no attribute 'type'
2021-07-10T02:54:22,546   cythoning taggd/misc/distance_metrics.pyx to taggd/misc/distance_metrics.c
2021-07-10T02:54:22,548   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/misc/distance_metrics.pyx
2021-07-10T02:54:22,548     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:24,074   cythoning taggd/misc/kmer_utils.pyx to taggd/misc/kmer_utils.c
2021-07-10T02:54:24,080   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/misc/kmer_utils.pyx
2021-07-10T02:54:24,080     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:25,875   cythoning taggd/misc/counter.pyx to taggd/misc/counter.c
2021-07-10T02:54:25,881   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/misc/counter.pyx
2021-07-10T02:54:25,881     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:26,084   cythoning taggd/io/phred_utils.pyx to taggd/io/phred_utils.c
2021-07-10T02:54:26,090   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/io/phred_utils.pyx
2021-07-10T02:54:26,091     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:26,352   cythoning taggd/io/barcode_utils.pyx to taggd/io/barcode_utils.c
2021-07-10T02:54:26,357   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/io/barcode_utils.pyx
2021-07-10T02:54:26,358     tree = Parsing.p_module(s, pxd, full_module_name)

2021-07-10T02:54:26,412   Error compiling Cython file:
2021-07-10T02:54:26,412   ------------------------------------------------------------
2021-07-10T02:54:26,412   ...
2021-07-10T02:54:26,412   '''Contains utilities for handling barcodes.'''

2021-07-10T02:54:26,412   from taggd.misc.distance_metrics cimport *
2021-07-10T02:54:26,413   ^
2021-07-10T02:54:26,413   ------------------------------------------------------------

2021-07-10T02:54:26,413   taggd/io/barcode_utils.pyx:3:0: 'taggd/misc/distance_metrics.pxd' not found

2021-07-10T02:54:26,467   Error compiling Cython file:
2021-07-10T02:54:26,468   ------------------------------------------------------------
2021-07-10T02:54:26,468   ...
2021-07-10T02:54:26,468       cdef unsigned int j
2021-07-10T02:54:26,468       cdef unsigned int dist
2021-07-10T02:54:26,468       cdef unsigned int iter = 0
2021-07-10T02:54:26,468       for i in xrange(len(seqslist)):
2021-07-10T02:54:26,468           for j in xrange(int(i+1), len(seqslist)):
2021-07-10T02:54:26,468               dist = hamming_distance(seqslist[i], seqslist[j], min_dist)
2021-07-10T02:54:26,469                     ^
2021-07-10T02:54:26,469   ------------------------------------------------------------

2021-07-10T02:54:26,469   taggd/io/barcode_utils.pyx:64:19: undeclared name not builtin: hamming_distance
2021-07-10T02:54:26,509   cythoning taggd/io/record.pyx to taggd/io/record.c
2021-07-10T02:54:26,515   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/io/record.pyx
2021-07-10T02:54:26,515     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:26,595   cythoning taggd/io/sam_record.pyx to taggd/io/sam_record.c
2021-07-10T02:54:26,600   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/io/sam_record.pyx
2021-07-10T02:54:26,601     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:26,742   cythoning taggd/io/fasta_record.pyx to taggd/io/fasta_record.c
2021-07-10T02:54:26,748   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/io/fasta_record.pyx
2021-07-10T02:54:26,748     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:26,855   cythoning taggd/io/fastq_record.pyx to taggd/io/fastq_record.c
2021-07-10T02:54:26,860   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/io/fastq_record.pyx
2021-07-10T02:54:26,860     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:26,970   cythoning taggd/io/reads_reader_writer.pyx to taggd/io/reads_reader_writer.c
2021-07-10T02:54:26,976   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/taggd/io/reads_reader_writer.pyx
2021-07-10T02:54:26,976     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T02:54:27,354   building 'taggd.core.demultiplex_core_functions' extension
2021-07-10T02:54:27,354   creating build/temp.linux-armv7l-3.9
2021-07-10T02:54:27,355   creating build/temp.linux-armv7l-3.9/taggd
2021-07-10T02:54:27,355   creating build/temp.linux-armv7l-3.9/taggd/core
2021-07-10T02:54:27,356   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I. -I/usr/include/python3.9 -c taggd/core/demultiplex_core_functions.c -o build/temp.linux-armv7l-3.9/taggd/core/demultiplex_core_functions.o
2021-07-10T02:54:27,414   taggd/core/demultiplex_core_functions.c:1:2: error: #error Do not use this file, it is the result of a failed Cython compilation.
2021-07-10T02:54:27,415       1 | #error Do not use this file, it is the result of a failed Cython compilation.
2021-07-10T02:54:27,415         |  ^~~~~
2021-07-10T02:54:27,419   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-10T02:54:27,680   Building wheel for taggd (setup.py): finished with status 'error'
2021-07-10T02:54:27,680   ERROR: Failed building wheel for taggd
2021-07-10T02:54:27,681   Running setup.py clean for taggd
2021-07-10T02:54:27,681   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-69zqq09f/taggd_4e42f7d6e4b14df08b11c4265025d24c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-10T02:54:28,799   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-10T02:54:28,799     warnings.warn(
2021-07-10T02:54:28,809   running clean
2021-07-10T02:54:28,811   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-10T02:54:28,813   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-10T02:54:28,819   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-10T02:54:28,820   'build/scripts-3.9' does not exist -- can't clean it
2021-07-10T02:54:28,820   removing 'build'
2021-07-10T02:54:28,905 Failed to build taggd
2021-07-10T02:54:28,906 ERROR: Failed to build one or more wheels
2021-07-10T02:54:28,906 Exception information:
2021-07-10T02:54:28,906 Traceback (most recent call last):
2021-07-10T02:54:28,906   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-10T02:54:28,906     status = self.run(options, args)
2021-07-10T02:54:28,906   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-10T02:54:28,906     return func(self, options, args)
2021-07-10T02:54:28,906   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-10T02:54:28,906     raise CommandError(
2021-07-10T02:54:28,906 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-10T02:54:28,909 Removed build tracker: '/tmp/pip-req-tracker-pe_cs13h'