2021-07-10T03:40:44,789 Created temporary directory: /tmp/pip-ephem-wheel-cache-txec3508 2021-07-10T03:40:44,792 Created temporary directory: /tmp/pip-req-tracker-i9usvwfr 2021-07-10T03:40:44,792 Initialized build tracking at /tmp/pip-req-tracker-i9usvwfr 2021-07-10T03:40:44,792 Created build tracker: /tmp/pip-req-tracker-i9usvwfr 2021-07-10T03:40:44,793 Entered build tracker: /tmp/pip-req-tracker-i9usvwfr 2021-07-10T03:40:44,793 Created temporary directory: /tmp/pip-wheel-7eh764bu 2021-07-10T03:40:44,826 1 location(s) to search for versions of gat: 2021-07-10T03:40:44,826 * https://pypi.org/simple/gat/ 2021-07-10T03:40:44,827 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-10T03:40:44,827 Getting page https://pypi.org/simple/gat/ 2021-07-10T03:40:44,829 Found index url https://pypi.org/simple 2021-07-10T03:40:44,924 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-10T03:40:44,925 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-10T03:40:44,925 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-10T03:40:44,925 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-10T03:40:44,925 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-10T03:40:44,926 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-10T03:40:44,926 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-10T03:40:44,926 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-10T03:40:44,927 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-10T03:40:44,927 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-10T03:40:44,927 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-10T03:40:44,927 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-10T03:40:44,928 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-10T03:40:44,928 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-10T03:40:44,947 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-10T03:40:44,966 Collecting gat==1.2.1 2021-07-10T03:40:44,967 Created temporary directory: /tmp/pip-unpack-2liel6r8 2021-07-10T03:40:45,446 Downloading gat-1.2.1.tar.gz (436 kB) 2021-07-10T03:40:45,757 Added gat==1.2.1 from https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc to build tracker '/tmp/pip-req-tracker-i9usvwfr' 2021-07-10T03:40:45,758 Running setup.py (path:/tmp/pip-wheel-7eh764bu/gat_f18aa98a715741a1a1d5137531e81901/setup.py) egg_info for package gat 2021-07-10T03:40:45,758 Created temporary directory: /tmp/pip-pip-egg-info-vtk2gz11 2021-07-10T03:40:45,758 Running command python setup.py egg_info 2021-07-10T03:40:46,846 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-10T03:40:46,846 warnings.warn( 2021-07-10T03:40:46,977 running egg_info 2021-07-10T03:40:46,980 creating /tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info 2021-07-10T03:40:46,980 writing /tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info/PKG-INFO 2021-07-10T03:40:46,983 writing dependency_links to /tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info/dependency_links.txt 2021-07-10T03:40:46,985 writing requirements to /tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info/requires.txt 2021-07-10T03:40:46,987 writing top-level names to /tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info/top_level.txt 2021-07-10T03:40:46,988 writing manifest file '/tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info/SOURCES.txt' 2021-07-10T03:40:47,138 reading manifest file '/tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info/SOURCES.txt' 2021-07-10T03:40:47,139 reading manifest template 'MANIFEST.in' 2021-07-10T03:40:47,140 warning: no files found matching 'COPYING' 2021-07-10T03:40:47,141 warning: no files found matching 'INSTALL' 2021-07-10T03:40:47,141 warning: no files found matching 'KNOWN_BUGS' 2021-07-10T03:40:47,141 warning: no files found matching 'THANKS' 2021-07-10T03:40:47,148 writing manifest file '/tmp/pip-pip-egg-info-vtk2gz11/gat.egg-info/SOURCES.txt' 2021-07-10T03:40:47,245 Source in /tmp/pip-wheel-7eh764bu/gat_f18aa98a715741a1a1d5137531e81901 has version 1.2.1, which satisfies requirement gat==1.2.1 from https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc 2021-07-10T03:40:47,246 Removed gat==1.2.1 from https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc from build tracker '/tmp/pip-req-tracker-i9usvwfr' 2021-07-10T03:40:47,250 Created temporary directory: /tmp/pip-unpack-bxfwee7q 2021-07-10T03:40:47,251 Building wheels for collected packages: gat 2021-07-10T03:40:47,255 Created temporary directory: /tmp/pip-wheel-rrh21f6t 2021-07-10T03:40:47,255 Building wheel for gat (setup.py): started 2021-07-10T03:40:47,255 Destination directory: /tmp/pip-wheel-rrh21f6t 2021-07-10T03:40:47,256 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7eh764bu/gat_f18aa98a715741a1a1d5137531e81901/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7eh764bu/gat_f18aa98a715741a1a1d5137531e81901/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rrh21f6t 2021-07-10T03:40:48,308 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-10T03:40:48,309 warnings.warn( 2021-07-10T03:40:48,454 running bdist_wheel 2021-07-10T03:40:48,458 running build 2021-07-10T03:40:48,458 running build_py 2021-07-10T03:40:48,592 creating build 2021-07-10T03:40:48,592 creating build/lib.linux-armv7l-3.9 2021-07-10T03:40:48,593 creating build/lib.linux-armv7l-3.9/gat 2021-07-10T03:40:48,594 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:40:48,597 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:40:48,599 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:40:48,602 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:40:48,606 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:40:48,610 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:40:48,613 running build_ext 2021-07-10T03:40:48,698 skipping 'GatSegmentList/GatSegmentList.c' Cython extension (up-to-date) 2021-07-10T03:40:48,698 skipping 'GatEngine/GatEngine.c' Cython extension (up-to-date) 2021-07-10T03:40:48,698 building 'GatSegmentList' extension 2021-07-10T03:40:48,699 creating build/temp.linux-armv7l-3.9 2021-07-10T03:40:48,699 creating build/temp.linux-armv7l-3.9/GatSegmentList 2021-07-10T03:40:48,700 creating build/temp.linux-armv7l-3.9/utils 2021-07-10T03:40:48,700 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c GatSegmentList/GatSegmentList.c -o build/temp.linux-armv7l-3.9/GatSegmentList/GatSegmentList.o 2021-07-10T03:40:49,624 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T03:40:49,624 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T03:40:49,624 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T03:40:49,624 from GatSegmentList/GatSegmentList.c:324: 2021-07-10T03:40:49,625 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T03:40:49,625 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T03:40:49,625 | ^~~~~~~ 2021-07-10T03:40:49,709 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList___init__’: 2021-07-10T03:40:49,710 GatSegmentList/GatSegmentList.c:2952:20: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-10T03:40:49,711 2952 | __pyx_t_14 = PyString_AsString(__pyx_t_5); if (unlikely(__pyx_t_14 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:40:49,711 | ^~~~~~~~~~~~~~~~~ 2021-07-10T03:40:49,712 GatSegmentList/GatSegmentList.c:2952:18: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T03:40:49,712 2952 | __pyx_t_14 = PyString_AsString(__pyx_t_5); if (unlikely(__pyx_t_14 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:40:49,713 | ^ 2021-07-10T03:40:49,730 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_2__reduce__’: 2021-07-10T03:40:49,733 GatSegmentList/GatSegmentList.c:3412:17: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2021-07-10T03:40:49,733 3412 | __pyx_t_7 = PyString_FromStringAndSize(((char *)__pyx_v_self->segments), ((__pyx_v_self->nsegments * (sizeof(__pyx_t_14GatSegmentList_Position))) * 2)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 268; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:40:49,733 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:49,733 | PyBytes_FromStringAndSize 2021-07-10T03:40:49,735 GatSegmentList/GatSegmentList.c:3412:15: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T03:40:49,735 3412 | __pyx_t_7 = PyString_FromStringAndSize(((char *)__pyx_v_self->segments), ((__pyx_v_self->nsegments * (sizeof(__pyx_t_14GatSegmentList_Position))) * 2)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 268; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:40:49,735 | ^ 2021-07-10T03:40:49,766 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_trim_ends’: 2021-07-10T03:40:49,769 GatSegmentList/GatSegmentList.c:5420:124: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-10T03:40:49,769 5420 | if (unlikely(!((((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-10T03:40:49,769 | ^ 2021-07-10T03:40:49,769 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:40:49,770 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:40:49,770 | ^ 2021-07-10T03:40:49,774 GatSegmentList/GatSegmentList.c:5469:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,774 5469 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,774 | ^~ 2021-07-10T03:40:49,778 GatSegmentList/GatSegmentList.c:5600:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,779 5600 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,779 | ^~ 2021-07-10T03:40:49,785 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList__resize’: 2021-07-10T03:40:49,788 GatSegmentList/GatSegmentList.c:5882:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,789 5882 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-10T03:40:49,789 | ^~ 2021-07-10T03:40:49,789 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:40:49,789 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:40:49,789 | ^ 2021-07-10T03:40:49,792 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_insert’: 2021-07-10T03:40:49,796 GatSegmentList/GatSegmentList.c:6061:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T03:40:49,796 6061 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-10T03:40:49,796 | ^ 2021-07-10T03:40:49,800 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_trim’: 2021-07-10T03:40:49,803 GatSegmentList/GatSegmentList.c:6248:124: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-10T03:40:49,803 6248 | if (unlikely(!((((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-10T03:40:49,803 | ^ 2021-07-10T03:40:49,803 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:40:49,803 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:40:49,804 | ^ 2021-07-10T03:40:49,808 GatSegmentList/GatSegmentList.c:6315:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,809 6315 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,809 | ^~ 2021-07-10T03:40:49,813 GatSegmentList/GatSegmentList.c:6386:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,813 6386 | __pyx_t_5 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-10T03:40:49,814 | ^~ 2021-07-10T03:40:49,817 GatSegmentList/GatSegmentList.c:6482:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,817 6482 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,818 | ^~ 2021-07-10T03:40:49,825 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_normalize’: 2021-07-10T03:40:49,828 GatSegmentList/GatSegmentList.c:6725:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,828 6725 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,829 | ^ 2021-07-10T03:40:49,833 GatSegmentList/GatSegmentList.c:6751:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,834 6751 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,834 | ^~ 2021-07-10T03:40:49,837 GatSegmentList/GatSegmentList.c:6814:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,838 6814 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,838 | ^ 2021-07-10T03:40:49,843 GatSegmentList/GatSegmentList.c:6884:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,843 6884 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-10T03:40:49,843 | ^ 2021-07-10T03:40:49,843 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:40:49,843 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:40:49,843 | ^ 2021-07-10T03:40:49,849 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_merge’: 2021-07-10T03:40:49,853 GatSegmentList/GatSegmentList.c:7169:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,853 7169 | __pyx_t_4 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,853 | ^ 2021-07-10T03:40:49,858 GatSegmentList/GatSegmentList.c:7195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,858 7195 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,858 | ^~ 2021-07-10T03:40:49,862 GatSegmentList/GatSegmentList.c:7258:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,862 7258 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,862 | ^ 2021-07-10T03:40:49,870 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_check’: 2021-07-10T03:40:49,874 GatSegmentList/GatSegmentList.c:7622:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,874 7622 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:40:49,875 | ^ 2021-07-10T03:40:49,879 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList__getInsertionPoint’: 2021-07-10T03:40:49,883 GatSegmentList/GatSegmentList.c:7949:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,884 7949 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,884 | ^~ 2021-07-10T03:40:49,897 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_overlap’: 2021-07-10T03:40:49,901 GatSegmentList/GatSegmentList.c:8547:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,901 8547 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,902 | ^~ 2021-07-10T03:40:49,906 GatSegmentList/GatSegmentList.c:8584:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,906 8584 | __pyx_t_1 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,906 | ^ 2021-07-10T03:40:49,909 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getOverlappingSegments’: 2021-07-10T03:40:49,913 GatSegmentList/GatSegmentList.c:8685:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,914 8685 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,914 | ^~ 2021-07-10T03:40:49,918 GatSegmentList/GatSegmentList.c:8734:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,919 8734 | __pyx_t_1 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,919 | ^ 2021-07-10T03:40:49,943 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_overlapWithSegments’: 2021-07-10T03:40:49,947 GatSegmentList/GatSegmentList.c:9330:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,948 9330 | __pyx_t_5 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,948 | ^ 2021-07-10T03:40:49,952 GatSegmentList/GatSegmentList.c:9332:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,953 9332 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:40:49,953 | ^ 2021-07-10T03:40:49,960 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_intersectionWithSegments’: 2021-07-10T03:40:49,965 GatSegmentList/GatSegmentList.c:9778:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,966 9778 | __pyx_t_5 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:49,966 | ^ 2021-07-10T03:40:49,971 GatSegmentList/GatSegmentList.c:9780:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,971 9780 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:40:49,971 | ^ 2021-07-10T03:40:49,978 GatSegmentList/GatSegmentList.c:9910:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-10T03:40:49,978 9910 | __pyx_t_9 = (__pyx_v_other_segment.start <= __pyx_t_10); 2021-07-10T03:40:49,979 | ^~ 2021-07-10T03:40:49,983 GatSegmentList/GatSegmentList.c:9920:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:49,983 9920 | __pyx_t_9 = (__pyx_t_10 < __pyx_v_other_segment.end); 2021-07-10T03:40:49,983 | ^ 2021-07-10T03:40:49,995 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_36getLengthDistribution’: 2021-07-10T03:40:50,000 GatSegmentList/GatSegmentList.c:10368:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,001 10368 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-10T03:40:50,001 | ^ 2021-07-10T03:40:50,010 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_truncate’: 2021-07-10T03:40:50,015 GatSegmentList/GatSegmentList.c:10624:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,015 10624 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-10T03:40:50,015 | ^ 2021-07-10T03:40:50,021 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_subtract’: 2021-07-10T03:40:50,026 GatSegmentList/GatSegmentList.c:10975:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,027 10975 | __pyx_t_4 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:50,027 | ^ 2021-07-10T03:40:50,032 GatSegmentList/GatSegmentList.c:10977:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,032 10977 | __pyx_t_6 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:40:50,032 | ^ 2021-07-10T03:40:50,039 GatSegmentList/GatSegmentList.c:10991:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,040 10991 | __pyx_t_7 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-10T03:40:50,040 | ^~ 2021-07-10T03:40:50,045 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_summarize’: 2021-07-10T03:40:50,050 GatSegmentList/GatSegmentList.c:11487:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,051 11487 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:40:50,051 | ^ 2021-07-10T03:40:50,056 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-10T03:40:50,062 GatSegmentList/GatSegmentList.c:11717:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,062 11717 | __pyx_t_5 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-10T03:40:50,062 | ^ 2021-07-10T03:40:50,069 GatSegmentList/GatSegmentList.c:11789:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,070 11789 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:50,070 | ^~ 2021-07-10T03:40:50,078 GatSegmentList/GatSegmentList.c:11891:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,079 11891 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:50,079 | ^~ 2021-07-10T03:40:50,090 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-10T03:40:50,096 GatSegmentList/GatSegmentList.c:12117:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,096 12117 | __pyx_t_5 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-10T03:40:50,096 | ^ 2021-07-10T03:40:50,104 GatSegmentList/GatSegmentList.c:12189:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,104 12189 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:50,104 | ^~ 2021-07-10T03:40:50,119 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_filter’: 2021-07-10T03:40:50,125 GatSegmentList/GatSegmentList.c:12649:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,126 12649 | __pyx_t_4 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:50,126 | ^ 2021-07-10T03:40:50,132 GatSegmentList/GatSegmentList.c:12651:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,132 12651 | __pyx_t_6 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:40:50,132 | ^ 2021-07-10T03:40:50,142 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_intersect’: 2021-07-10T03:40:50,148 GatSegmentList/GatSegmentList.c:13225:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,149 13225 | __pyx_t_4 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:40:50,149 | ^ 2021-07-10T03:40:50,155 GatSegmentList/GatSegmentList.c:13227:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,155 13227 | __pyx_t_6 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:40:50,155 | ^ 2021-07-10T03:40:50,167 GatSegmentList/GatSegmentList.c:13373:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,167 13373 | __pyx_t_7 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-10T03:40:50,168 | ^~ 2021-07-10T03:40:50,173 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_extend_segments’: 2021-07-10T03:40:50,179 GatSegmentList/GatSegmentList.c:13650:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,180 13650 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:40:50,180 | ^ 2021-07-10T03:40:50,185 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_expand_segments’: 2021-07-10T03:40:50,192 GatSegmentList/GatSegmentList.c:13861:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,192 13861 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_5; __pyx_v_idx++) { 2021-07-10T03:40:50,193 | ^ 2021-07-10T03:40:50,194 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_54shift’: 2021-07-10T03:40:50,201 GatSegmentList/GatSegmentList.c:14046:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,201 14046 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-10T03:40:50,202 | ^ 2021-07-10T03:40:50,206 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_sum’: 2021-07-10T03:40:50,213 GatSegmentList/GatSegmentList.c:14164:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,213 14164 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:40:50,213 | ^ 2021-07-10T03:40:50,214 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_58largest’: 2021-07-10T03:40:50,221 GatSegmentList/GatSegmentList.c:14343:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,222 14343 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-10T03:40:50,222 | ^ 2021-07-10T03:40:50,239 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_72asList’: 2021-07-10T03:40:50,246 GatSegmentList/GatSegmentList.c:15106:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,246 15106 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-10T03:40:50,247 | ^ 2021-07-10T03:40:50,248 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_74asLengths’: 2021-07-10T03:40:50,255 GatSegmentList/GatSegmentList.c:15211:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:40:50,256 15211 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-10T03:40:50,256 | ^ 2021-07-10T03:40:50,341 GatSegmentList/GatSegmentList.c: In function ‘PyInit_GatSegmentList’: 2021-07-10T03:40:50,358 GatSegmentList/GatSegmentList.c:18632:98: error: ‘PyFileObject’ undeclared (first use in this function); did you mean ‘PyCellObject’? 2021-07-10T03:40:50,358 18632 | __pyx_ptype_14GatSegmentList_file = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "file", sizeof(PyFileObject), 0); if (unlikely(!__pyx_ptype_14GatSegmentList_file)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 112; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:40:50,358 | ^~~~~~~~~~~~ 2021-07-10T03:40:50,359 | PyCellObject 2021-07-10T03:40:50,359 GatSegmentList/GatSegmentList.c:18632:98: note: each undeclared identifier is reported only once for each function it appears in 2021-07-10T03:40:50,372 GatSegmentList/GatSegmentList.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T03:40:50,382 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,382 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,382 | ^ 2021-07-10T03:40:50,382 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,382 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,383 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,383 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,383 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,383 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,394 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,394 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,394 | ^ 2021-07-10T03:40:50,394 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,394 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,395 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,395 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:40:50,395 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:40:50,395 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,405 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,406 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,406 | ^ 2021-07-10T03:40:50,406 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,406 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,406 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,406 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,406 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,406 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,417 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,417 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,417 | ^ 2021-07-10T03:40:50,417 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,417 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,417 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,418 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,418 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,428 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,428 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,428 | ^ 2021-07-10T03:40:50,428 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,429 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,429 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,429 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:40:50,429 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:40:50,429 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,440 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,440 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,440 | ^ 2021-07-10T03:40:50,440 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,440 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,440 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,440 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,440 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,441 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,453 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,454 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,454 | ^ 2021-07-10T03:40:50,454 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,454 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,454 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,454 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,454 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,454 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,465 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,465 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,465 | ^ 2021-07-10T03:40:50,465 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,465 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,465 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,466 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:40:50,466 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:40:50,466 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,476 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,476 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,476 | ^ 2021-07-10T03:40:50,477 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,477 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,477 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,477 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,477 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,477 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,488 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,488 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,488 | ^ 2021-07-10T03:40:50,488 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,488 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,488 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,488 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,489 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,499 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,499 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,499 | ^ 2021-07-10T03:40:50,499 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,500 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,500 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,500 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:40:50,500 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:40:50,500 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,510 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,511 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:40:50,511 | ^ 2021-07-10T03:40:50,511 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:40:50,511 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:40:50,511 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,511 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:40:50,511 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:40:50,512 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,547 GatSegmentList/GatSegmentList.c: In function ‘__Pyx_Raise’: 2021-07-10T03:40:50,557 GatSegmentList/GatSegmentList.c:19165:9: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:40:50,557 19165 | owned_instance = PyEval_CallObject(type, args); 2021-07-10T03:40:50,557 | ^~~~~~~~~~~~~~ 2021-07-10T03:40:50,558 In file included from /usr/include/python3.9/Python.h:145, 2021-07-10T03:40:50,558 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:40:50,558 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-10T03:40:50,558 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-10T03:40:50,558 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,985 At top level: 2021-07-10T03:40:50,986 GatSegmentList/GatSegmentList.c:2296:12: warning: ‘__pyx_f_14GatSegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-10T03:40:50,986 2296 | static int __pyx_f_14GatSegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-10T03:40:50,986 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,987 GatSegmentList/GatSegmentList.c:2267:12: warning: ‘__pyx_f_14GatSegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-10T03:40:50,987 2267 | static int __pyx_f_14GatSegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-10T03:40:50,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,988 GatSegmentList/GatSegmentList.c:2212:12: warning: ‘__pyx_f_14GatSegmentList_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-10T03:40:50,988 2212 | static int __pyx_f_14GatSegmentList_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-10T03:40:50,988 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:40:50,989 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T03:40:50,989 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T03:40:50,989 from GatSegmentList/GatSegmentList.c:324: 2021-07-10T03:40:50,990 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T03:40:50,990 1464 | _import_array(void) 2021-07-10T03:40:50,990 | ^~~~~~~~~~~~~ 2021-07-10T03:40:50,996 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T03:40:51,112 Building wheel for gat (setup.py): finished with status 'error' 2021-07-10T03:40:51,113 ERROR: Failed building wheel for gat 2021-07-10T03:40:51,113 Running setup.py clean for gat 2021-07-10T03:40:51,113 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7eh764bu/gat_f18aa98a715741a1a1d5137531e81901/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7eh764bu/gat_f18aa98a715741a1a1d5137531e81901/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T03:40:52,160 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-10T03:40:52,160 warnings.warn( 2021-07-10T03:40:52,283 running clean 2021-07-10T03:40:52,286 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T03:40:52,289 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T03:40:52,292 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T03:40:52,293 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T03:40:52,293 removing 'build' 2021-07-10T03:40:52,383 Failed to build gat 2021-07-10T03:40:52,384 ERROR: Failed to build one or more wheels 2021-07-10T03:40:52,384 Exception information: 2021-07-10T03:40:52,384 Traceback (most recent call last): 2021-07-10T03:40:52,384 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T03:40:52,384 status = self.run(options, args) 2021-07-10T03:40:52,384 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T03:40:52,384 return func(self, options, args) 2021-07-10T03:40:52,384 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T03:40:52,384 raise CommandError( 2021-07-10T03:40:52,384 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T03:40:52,387 Removed build tracker: '/tmp/pip-req-tracker-i9usvwfr'